Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL9A1

Gene Name Gene ID Reads Annotation
COL9A1 ENSGALG00000015970 3788 collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]











Genes with expression patterns similar to COL9A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL9A1 ENSGALG00000015970 3788 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
2. COL8A1 ENSGALG00000015253 2505 6.222 - 0.722 0.956 0.948 0.948 0.956 0.916 - - 0.776 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
3. COL9A3 ENSGALG00000005628 2842 5.928 - - 0.918 0.823 0.901 0.856 0.929 - 0.801 0.700 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
4. COL9A2 ENSGALG00000027526 4685 5.761 - - 0.921 0.830 0.850 0.914 0.771 0.710 0.765 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
5. OSF-2 OSF-2 10433 5.403 - 0.709 0.827 0.732 0.748 0.762 0.898 - - 0.727
6. T ENSGALG00000011489 2619 5.361 - 0.734 0.908 0.905 0.934 0.939 0.941 - - - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
7. RAB38 ENSGALG00000028018 1046 5.233 - - 0.859 0.928 0.878 0.940 0.910 - - 0.718 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
8. C9H2ORF82 ENSGALG00000040264 4201 4.655 - - 0.965 0.928 0.955 0.892 0.915 - - - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
9. EMILIN3 ENSGALG00000030012 6200 4.373 - - 0.897 0.858 0.839 0.900 0.879 - - - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
10. SST ENSGALG00000007361 1383 4.327 - - 0.893 0.822 0.938 0.854 0.820 - - - somatostatin [Source:NCBI gene;Acc:396279]
11. SCARA3 ENSGALG00000026651 2559 4.302 - - 0.926 0.780 0.862 0.886 0.848 - - - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
12. TIMP3 ENSGALG00000028627 8706 4.243 - - 0.906 0.857 0.772 0.893 0.815 - - - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
13. WWP2 ENSGALG00000000699 5040 4.072 - - 0.913 0.716 - 0.824 0.911 0.708 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
14. OCA2 ENSGALG00000016740 421 3.998 - - 0.706 0.819 0.803 0.956 0.714 - - - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
15. TAC1 ENSGALG00000009737 2211 3.491 - - 0.897 0.874 - 0.917 0.803 - - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
16. SAMD3 ENSGALG00000032409 459 3.475 - - - 0.916 0.746 0.964 0.849 - - - sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
17. ZNF385B ENSGALG00000009012 290 3.32 - - 0.899 0.816 0.705 0.900 - - - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
18. SPON2 ENSGALG00000038433 1240 3.276 - - - 0.814 0.708 0.946 0.808 - - - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
19. SLC15A5 ENSGALG00000013097 213 3.264 - - 0.779 - 0.843 0.919 0.723 - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
20. LECT1 LECT1 12694 3.253 - - 0.815 0.772 0.770 - 0.896 - - -
21. ACAN ENSGALG00000006725 184 3.194 - - 0.808 - - 0.891 - - 0.753 0.742 aggrecan [Source:NCBI gene;Acc:395798]
22. SCIN ENSGALG00000010770 883 2.414 - - 0.843 0.812 - 0.759 - - - - scinderin [Source:NCBI gene;Acc:420588]
23. LRRTM1 ENSGALG00000015967 85 2.338 - - - 0.751 - 0.863 0.724 - - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
24. NPY7R ENSGALG00000021303 215 1.727 - - - 0.824 - 0.903 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
25. SHH ENSGALG00000006379 1943 1.684 - - 0.862 - - - 0.822 - - - sonic hedgehog [Source:NCBI gene;Acc:395615]
26. SCARA5 ENSGALG00000016580 712 1.645 - - - - - 0.898 0.747 - - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
27. RGS4 ENSGALG00000002564 201 1.608 - - - - - 0.797 0.811 - - - regulator of G-protein signaling 4 [Source:NCBI gene;Acc:378901]
28. SOX9 ENSGALG00000004386 14802 1.578 - - 0.825 - - - 0.753 - - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
29. ENSGALG00000010113 ENSGALG00000010113 508 1.563 - - 0.719 - - - 0.844 - - -
30. PAX1 ENSGALG00000039040 3339 1.559 - - 0.838 - 0.721 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
31. SPON1 ENSGALG00000038775 16503 1.545 - - 0.763 - - - 0.782 - - - spondin 1 [Source:NCBI gene;Acc:395657]
32. TF ENSGALG00000006453 14007 1.534 - - 0.797 - - 0.737 - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
33. HHIP ENSGALG00000009948 1536 1.526 - - 0.715 - - - 0.811 - - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
34. ZNF536 ENSGALG00000035602 1127 1.508 - - - 0.706 - - 0.802 - - - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
35. C1QTNF3 ENSGALG00000027887 8646 1.463 - - 0.744 - 0.719 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
36. HOXA10 ENSGALG00000026631 1 0.956 - - - - - 0.956 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
37. KCNG1 ENSGALG00000007980 26 0.956 - - - - - 0.956 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
38. APOD ENSGALG00000006995 2 0.956 - - - - - 0.956 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
39. ENSGALG00000008822 ENSGALG00000008822 221 0.953 - - - - - 0.953 - - - -
40. RRAD ENSGALG00000005140 183 0.946 - - - - - 0.946 - - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
41. LEFTY2 ENSGALG00000009256 1 0.944 - - - - - 0.944 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
42. PTH3R PTH3R 214 0.944 - - - - - 0.944 - - - -
43. CCK ENSGALG00000029788 213 0.938 - - - - - 0.938 - - - - cholecystokinin [Source:NCBI gene;Acc:414884]
44. B3GNT7 ENSGALG00000007701 929 0.926 - - - - - 0.926 - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
45. PCDH17 ENSGALG00000016941 1006 0.918 - - - - - 0.918 - - - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
46. WIF1 ENSGALG00000039209 863 0.9 - - - - - 0.900 - - - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
47. TXNRD1 ENSGALG00000035345 4784 0.898 - - - 0.898 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
48. CCL17 ENSGALG00000024466 10 0.891 - - - - - 0.891 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
49. CHRDL1 ENSGALG00000008072 711 0.89 - - - - - 0.890 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
50. MYL1 ENSGALG00000002907 1300 0.888 - - - - - 0.888 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
51. COL11A1 ENSGALG00000005180 244 0.855 - - - 0.855 - - - - - - collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
52. POMC ENSGALG00000016600 99 0.852 - - - - 0.852 - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
53. RGS18 ENSGALG00000021143 120 0.835 - - - - - 0.835 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
54. SPINK5 SPINK5 195 0.83 - - - - - 0.830 - - - -
55. VPAC2 VPAC2 45 0.817 - - - - - 0.817 - - - -
56. RYR2 ENSGALG00000010812 95 0.814 - - 0.814 - - - - - - - ryanodine receptor 2 [Source:HGNC Symbol;Acc:HGNC:10484]
57. LOC428824 ENSGALG00000004393 358 0.812 - - - - - 0.812 - - - - SITS-binding protein-like, transcript variant X1
58. LMX1A ENSGALG00000003424 335 0.805 - - - - - 0.805 - - - - LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]
59. EPB41L3 ENSGALG00000038678 5863 0.794 - - 0.794 - - - - - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
60. CYP1B1 ENSGALG00000025822 3143 0.791 - - 0.791 - - - - - - - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
61. KIAA1217 ENSGALG00000007766 144 0.786 - - - - - 0.786 - - - - KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25428]
62. GDPD5 ENSGALG00000034967 1983 0.785 - - - - - - 0.785 - - - glycerophosphodiester phosphodiesterase domain containing 5 [Source:NCBI gene;Acc:419070]
63. SS2 ENSGALG00000003034 277 0.784 - - - - - 0.784 - - - - somatostatin II [Source:NCBI gene;Acc:395106]
64. ARSI ENSGALG00000005616 12 0.783 - - 0.783 - - - - - - - arylsulfatase family member I [Source:HGNC Symbol;Acc:HGNC:32521]
65. HPGDS ENSGALG00000010402 343 0.78 - - - 0.780 - - - - - - hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
66. SERPINE2 ENSGALG00000005135 16108 0.78 - - - 0.780 - - - - - - serpin family E member 2 [Source:NCBI gene;Acc:424805]
67. FGFRL1 ENSGALG00000037525 1687 0.771 - - - - - - 0.771 - - - fibroblast growth factor receptor like 1 [Source:NCBI gene;Acc:395107]
68. CRIP1 ENSGALG00000002771 4270 0.771 - - 0.771 - - - - - - - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
69. PROK2 ENSGALG00000007785 55 0.766 - - - - - - 0.766 - - - prokineticin 2 [Source:HGNC Symbol;Acc:HGNC:18455]
70. SNCA ENSGALG00000010379 160 0.766 - - - - - 0.766 - - - - synuclein alpha [Source:NCBI gene;Acc:395393]
71. PMP22 ENSGALG00000031425 5358 0.759 - - 0.759 - - - - - - - peripheral myelin protein 22 [Source:NCBI gene;Acc:417327]
72. CPZ ENSGALG00000030209 8822 0.759 - - - - - - 0.759 - - - carboxypeptidase Z [Source:NCBI gene;Acc:395266]
73. ATP10A ENSGALG00000043118 797 0.758 - - - 0.758 - - - - - - ATPase phospholipid transporting 10A (putative) [Source:HGNC Symbol;Acc:HGNC:13542]
74. FNDC1 ENSGALG00000011663 1040 0.758 - - - - 0.758 - - - - - fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
75. METRNL ENSGALG00000028354 25565 0.758 - - - - - - 0.758 - - - meteorin like, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:27584]
76. SMOC1 ENSGALG00000009415 2403 0.753 - - 0.753 - - - - - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
77. ENSGALG00000014190 ENSGALG00000014190 5735 0.752 - - - - - 0.752 - - - -
78. KAZALD1 ENSGALG00000007837 2463 0.751 - - - - - 0.751 - - - - Kazal type serine peptidase inhibitor domain 1 [Source:HGNC Symbol;Acc:HGNC:25460]
79. OBSCN ENSGALG00000032534 20 0.749 - - - 0.749 - - - - - - obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [Source:HGNC Symbol;Acc:HGNC:15719]
80. gga-mir-6558 ENSGALG00000032123 13 0.749 - - 0.749 - - - - - - - gga-mir-6558 [Source:miRBase;Acc:MI0022376]
81. ENSGALG00000013079 ENSGALG00000013079 12 0.745 - - - - - 0.745 - - - -
82. MFSD6 ENSGALG00000041884 1 0.745 - - - - - 0.745 - - - - major facilitator superfamily domain containing 6 [Source:HGNC Symbol;Acc:HGNC:24711]
83. C1H7ORF60 C1H7ORF60 3 0.745 - - - - - 0.745 - - - -
84. FAM160A2 ENSGALG00000003416 23 0.745 - - - - - 0.745 - - - - family with sequence similarity 160 member A2 [Source:HGNC Symbol;Acc:HGNC:25378]
85. PITPNC1L ENSGALG00000002610 3 0.745 - - - - - 0.745 - - - - phosphatidylinositol transfer protein, cytoplasmic 1-like, transcript variant X2
86. SEC16A ENSGALG00000002364 19 0.745 - - - - - 0.745 - - - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X1
87. TMEM163 ENSGALG00000012190 72 0.745 - - - - - 0.745 - - - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
88. PTPN3 ENSGALG00000022909 6 0.745 - - - - - 0.745 - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
89. RHBDF2 ENSGALG00000001943 1 0.745 - - - - - 0.745 - - - - rhomboid 5 homolog 2 [Source:HGNC Symbol;Acc:HGNC:20788]
90. PRKG2 ENSGALG00000010909 1 0.745 - - - - - 0.745 - - - - protein kinase cGMP-dependent 2 [Source:HGNC Symbol;Acc:HGNC:9416]
91. AFTPH ENSGALG00000008828 21 0.745 - - - - - 0.745 - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
92. GBE ENSGALG00000011859, ENSGALG00000028016 2 0.745 - - - - - 0.745 - - - - eye-globin, transcript variant X3
93. SNX8 ENSGALG00000004255 4 0.745 - - - - - 0.745 - - - - sorting nexin 8 [Source:HGNC Symbol;Acc:HGNC:14972]
94. ARHGEF17 6 0.745 - - - - - 0.745 - - - - Rho guanine nucleotide exchange factor 17
95. PPP1R12B ENSGALG00000000336 16 0.745 - - - - - 0.745 - - - - protein phosphatase 1 regulatory subunit 12B [Source:NCBI gene;Acc:395478]
96. F-KER ENSGALG00000028706 0 0.745 - - - - - 0.745 - - - - feather keratin I [Source:NCBI gene;Acc:769269]
97. PPP1R1B ENSGALG00000044406 6 0.745 - - - - - 0.745 - - - - protein phosphatase 1 regulatory inhibitor subunit 1B [Source:HGNC Symbol;Acc:HGNC:9287]
98. STX3 ENSGALG00000035153 1 0.745 - - - - - 0.745 - - - - syntaxin 3
99. PLD5 ENSGALG00000010737 5 0.745 - - - - - 0.745 - - - - phospholipase D family member 5 [Source:NCBI gene;Acc:421501]
100. ZNRF2 ENSGALG00000031163 0 0.745 - - - - - 0.745 - - - - zinc and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:22316]

There are 78 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA