Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL8A1

Gene Name Gene ID Reads Annotation
COL8A1 ENSGALG00000015253 2505 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]











Genes with expression patterns similar to COL8A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL8A1 ENSGALG00000015253 2505 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
2. C9H2ORF82 ENSGALG00000040264 4201 7.842 - 0.732 0.951 0.974 0.923 0.924 0.888 0.909 0.821 0.720 chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
3. COL9A3 ENSGALG00000005628 2842 7.602 - 0.737 0.910 0.887 0.899 0.874 0.913 0.908 0.763 0.711 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
4. OSF-2 OSF-2 10433 7.324 - 0.735 0.823 0.782 0.710 0.780 0.902 0.889 0.883 0.820
5. SCARA3 ENSGALG00000026651 2559 6.772 - 0.717 0.954 0.849 0.807 0.931 0.864 0.823 0.827 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
6. SPON2 ENSGALG00000038433 1240 6.611 - 0.738 - 0.862 0.744 0.986 0.818 0.849 0.814 0.800 spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
7. OCA2 ENSGALG00000016740 421 6.607 - - 0.723 0.824 0.776 0.988 0.857 0.841 0.890 0.708 OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
8. COL9A1 ENSGALG00000015970 3788 6.222 - 0.722 0.956 0.948 0.948 0.956 0.916 - - 0.776 collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
9. RAB38 ENSGALG00000028018 1046 6.19 - - 0.863 0.960 0.862 0.975 0.824 0.880 - 0.826 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
10. TIMP3 ENSGALG00000028627 8706 6.005 - - 0.915 0.904 0.790 0.920 0.853 0.892 0.731 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
11. SST ENSGALG00000007361 1383 5.978 - - 0.892 0.820 0.971 0.896 0.799 0.805 - 0.795 somatostatin [Source:NCBI gene;Acc:396279]
12. ACAN ENSGALG00000006725 184 5.762 - - 0.879 0.718 0.723 0.923 - 0.825 0.874 0.820 aggrecan [Source:NCBI gene;Acc:395798]
13. T ENSGALG00000011489 2619 5.404 - - 0.894 0.949 0.926 0.974 0.924 - - 0.737 T brachyury transcription factor [Source:NCBI gene;Acc:395782]
14. COL9A2 ENSGALG00000027526 4685 5.285 - - 0.925 0.827 0.859 0.957 0.829 0.888 - - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
15. SAMD3 ENSGALG00000032409 459 5.215 - - - 0.948 0.803 0.981 0.841 0.889 - 0.753 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
16. TAC1 ENSGALG00000009737 2211 5.198 - 0.765 0.874 0.952 - 0.954 0.770 0.883 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
17. EMILIN3 ENSGALG00000030012 6200 4.484 - - 0.898 0.884 0.863 0.941 0.898 - - - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
18. LECT1 LECT1 12694 4.242 - - 0.844 0.798 0.809 - 0.918 0.873 - -
19. ZNF385B ENSGALG00000009012 290 4.122 - - 0.873 0.807 0.746 0.947 - 0.749 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
20. WWP2 ENSGALG00000000699 5040 4.088 - - 0.880 0.713 - 0.828 0.888 0.779 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
21. PCDH17 ENSGALG00000016941 1006 3.335 - - - - - 0.955 0.718 0.856 - 0.806 protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
22. SCIN ENSGALG00000010770 883 3.113 - - 0.857 0.766 - 0.788 0.702 - - - scinderin [Source:NCBI gene;Acc:420588]
23. SPON1 ENSGALG00000038775 16503 3.018 - 0.760 0.758 - 0.708 - 0.792 - - - spondin 1 [Source:NCBI gene;Acc:395657]
24. HPGDS ENSGALG00000010402 343 2.949 - - - 0.754 0.751 - - - 0.725 0.719 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
25. SLC15A5 ENSGALG00000013097 213 2.641 - - 0.835 - 0.850 0.956 - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
26. SCARA5 ENSGALG00000016580 712 2.584 - - - - - 0.947 0.787 0.850 - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
27. RRAD ENSGALG00000005140 183 2.564 - - - - - 0.985 0.762 - - 0.817 RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
28. B3GNT7 ENSGALG00000007701 929 2.54 - - - - - 0.942 0.719 - 0.879 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
29. ZNF536 ENSGALG00000035602 1127 2.372 - - - 0.791 - - 0.795 - 0.786 - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
30. SOX9 ENSGALG00000004386 14802 2.367 - - 0.867 - 0.720 - 0.780 - - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
31. COL11A1 ENSGALG00000005180 244 2.352 - - - 0.863 - - - - 0.745 0.744 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
32. IYD ENSGALG00000012392 315 2.303 - - - - - 0.773 - - 0.802 0.728 iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
33. NPY7R ENSGALG00000021303 215 1.805 - - - 0.868 - 0.937 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
34. SHH ENSGALG00000006379 1943 1.753 - - 0.879 - - - 0.874 - - - sonic hedgehog [Source:NCBI gene;Acc:395615]
35. ENSGALG00000008822 ENSGALG00000008822 221 1.743 - - - - - 0.991 - - - 0.752
36. POMC ENSGALG00000016600 99 1.688 - - - - 0.863 - - 0.825 - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
37. CCK ENSGALG00000029788 213 1.682 - - - - - 0.970 - 0.712 - - cholecystokinin [Source:NCBI gene;Acc:414884]
38. TXNRD1 ENSGALG00000035345 4784 1.677 - 0.732 - 0.945 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
39. SLC24A4 ENSGALG00000010793 238 1.674 - - - - - - - 0.757 0.917 - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
40. LRRTM1 ENSGALG00000015967 85 1.642 - - - 0.744 - 0.898 - - - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
41. CYP1B1 ENSGALG00000025822 3143 1.59 - - 0.797 - - - - - 0.793 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
42. FNDC1 ENSGALG00000011663 1040 1.59 - - - - 0.726 - - 0.864 - - fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
43. TF ENSGALG00000006453 14007 1.585 - - 0.805 - - 0.780 - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
44. ENSGALG00000010113 ENSGALG00000010113 508 1.582 - - 0.727 - - - 0.855 - - -
45. PAX1 ENSGALG00000039040 3339 1.571 - - 0.823 - 0.748 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
46. RGS4 ENSGALG00000002564 201 1.549 - - - - - 0.818 0.731 - - - regulator of G-protein signaling 4 [Source:NCBI gene;Acc:378901]
47. SMOC1 ENSGALG00000009415 2403 1.528 - - 0.743 - - - - - 0.785 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
48. BAFF BAFF 40 1.526 - - - - - 0.777 - - - 0.749
49. ENSGALG00000013409 ENSGALG00000013409 4 1.519 - - - - - 0.777 - - - 0.742
50. EPB41L3 ENSGALG00000038678 5863 1.515 - - 0.806 0.709 - - - - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
51. TMEM163 ENSGALG00000012190 72 1.487 - - 0.710 - - 0.777 - - - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
52. C1QTNF3 ENSGALG00000027887 8646 1.456 - - 0.709 - 0.747 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
53. SPOCK1 ENSGALG00000006258 2892 1.455 - 0.729 0.726 - - - - - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:11251]
54. HOXA10 ENSGALG00000026631 1 0.993 - - - - - 0.993 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
55. KCNG1 ENSGALG00000007980 26 0.993 - - - - - 0.993 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
56. APOD ENSGALG00000006995 2 0.993 - - - - - 0.993 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
57. PTH3R PTH3R 214 0.981 - - - - - 0.981 - - - -
58. LEFTY2 ENSGALG00000009256 1 0.981 - - - - - 0.981 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
59. WIF1 ENSGALG00000039209 863 0.943 - - - - - 0.943 - - - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
60. CHRDL1 ENSGALG00000008072 711 0.93 - - - - - 0.930 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
61. CCL17 ENSGALG00000024466 10 0.923 - - - - - 0.923 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
62. MYL1 ENSGALG00000002907 1300 0.903 - - - - - 0.903 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
63. RASGRF2 ENSGALG00000015598 30 0.883 - - - - - - - 0.883 - - Ras protein specific guanine nucleotide releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
64. PIGM ENSGALG00000010768 41 0.883 - - - - - - - 0.883 - - phosphatidylinositol glycan anchor biosynthesis class M [Source:NCBI gene;Acc:428583]
65. RYR2 ENSGALG00000010812 95 0.873 - - 0.873 - - - - - - - ryanodine receptor 2 [Source:HGNC Symbol;Acc:HGNC:10484]
66. RGS18 ENSGALG00000021143 120 0.858 - - - - - 0.858 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
67. LOC428824 ENSGALG00000004393 358 0.856 - - - - - 0.856 - - - - SITS-binding protein-like, transcript variant X1
68. DCLRE1B ENSGALG00000028626 48 0.854 - - - - - - - 0.854 - - DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
69. VPAC2 VPAC2 45 0.844 - - - - - 0.844 - - - -
70. PROK2 ENSGALG00000007785 55 0.839 - - - - - - 0.839 - - - prokineticin 2 [Source:HGNC Symbol;Acc:HGNC:18455]
71. MPEG1 ENSGALG00000028536 99 0.838 - - - - - - - - - 0.838 macrophage expressed 1 [Source:HGNC Symbol;Acc:HGNC:29619]
72. CDH4 ENSGALG00000005102 3446 0.837 - - - - - - - - 0.837 - cadherin 4 [Source:NCBI gene;Acc:419222]
73. NCBP2 ENSGALG00000006843 938 0.836 - - - - - - - 0.836 - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
74. PCDH12 ENSGALG00000002544 36 0.836 - - - - - - - 0.836 - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
75. GPR158 ENSGALG00000007667 111 0.833 - - - - - - - 0.833 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
76. FHL5 ENSGALG00000015573 321 0.833 - - - - - - - - - 0.833 four and a half LIM domains 5 [Source:NCBI gene;Acc:421803]
77. PRDM16 ENSGALG00000036728 934 0.83 - - - - - - - 0.830 - - PR/SET domain 16 [Source:HGNC Symbol;Acc:HGNC:14000]
78. FBLN1 ENSGALG00000014233 5062 0.825 - - - - - - - - - 0.825 fibulin 1 [Source:NCBI gene;Acc:373979]
79. GNOT1 GNOT1 22 0.823 - - - - - - - 0.823 - -
80. RREB1 ENSGALG00000012799 125 0.818 - - - - - - - - - 0.818 ras responsive element binding protein 1 [Source:NCBI gene;Acc:395920]
81. SPINK5 SPINK5 195 0.817 - - - - - 0.817 - - - -
82. GEMIN8 ENSGALG00000016574 18 0.812 - - - - - - - 0.812 - - gem nuclear organelle associated protein 8 [Source:HGNC Symbol;Acc:HGNC:26044]
83. OBSCN ENSGALG00000032534 20 0.811 - - - 0.811 - - - - - - obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [Source:HGNC Symbol;Acc:HGNC:15719]
84. KIAA1217 ENSGALG00000007766 144 0.809 - - - - - 0.809 - - - - KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25428]
85. gga-mir-6558 ENSGALG00000032123 13 0.804 - - 0.804 - - - - - - - gga-mir-6558 [Source:miRBase;Acc:MI0022376]
86. HHIP ENSGALG00000009948 1536 0.8 - - - - - - 0.800 - - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
87. TRPC3 ENSGALG00000011875 9 0.796 - - - - - - - - - 0.796 transient receptor potential cation channel subfamily C member 3 [Source:NCBI gene;Acc:374153]
88. TMEM45A ENSGALG00000015293 95 0.793 - - - - - 0.793 - - - - transmembrane protein 45A [Source:NCBI gene;Acc:418389]
89. CPNE8 ENSGALG00000007025 1002 0.786 - - - - - - - - 0.786 - copine 8 [Source:NCBI gene;Acc:417690]
90. ZNF385D ENSGALG00000011283 2578 0.783 - - - - - 0.783 - - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
91. HAS2 ENSGALG00000029596 4192 0.783 - - - - - - - - - 0.783 hyaluronan synthase 2 [Source:NCBI gene;Acc:395594]
92. CXCL13L2 ENSGALG00000010338 370 0.781 - - - - - - - - - 0.781 C-X-C motif chemokine ligand 13-like 2 [Source:NCBI gene;Acc:422510]
93. LMX1A ENSGALG00000003424 335 0.779 - - - - - 0.779 - - - - LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]
94. ARHGEF17 6 0.777 - - - - - 0.777 - - - - Rho guanine nucleotide exchange factor 17
95. PPP1R12B ENSGALG00000000336 16 0.777 - - - - - 0.777 - - - - protein phosphatase 1 regulatory subunit 12B [Source:NCBI gene;Acc:395478]
96. F-KER ENSGALG00000028706 0 0.777 - - - - - 0.777 - - - - feather keratin I [Source:NCBI gene;Acc:769269]
97. PPP1R1B ENSGALG00000044406 6 0.777 - - - - - 0.777 - - - - protein phosphatase 1 regulatory inhibitor subunit 1B [Source:HGNC Symbol;Acc:HGNC:9287]
98. STX3 ENSGALG00000035153 1 0.777 - - - - - 0.777 - - - - syntaxin 3
99. ZNRF2 ENSGALG00000031163 0 0.777 - - - - - 0.777 - - - - zinc and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:22316]
100. PLD5 ENSGALG00000010737 5 0.777 - - - - - 0.777 - - - - phospholipase D family member 5 [Source:NCBI gene;Acc:421501]

There are 136 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA