Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL6A3

Gene Name Gene ID Reads Annotation
COL6A3 ENSGALG00000003923 3400 collagen type VI alpha 3 chain [Source:NCBI gene;Acc:396548]











Genes with expression patterns similar to COL6A3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL6A3 ENSGALG00000003923 3400 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type VI alpha 3 chain [Source:NCBI gene;Acc:396548]
2. GPD1L ENSGALG00000011481 4224 1.479 - - - - - 0.719 - 0.760 - - glycerol-3-phosphate dehydrogenase 1 like [Source:HGNC Symbol;Acc:HGNC:28956]
3. PTX3 ENSGALG00000028284 2984 0.896 - - - - - - - 0.896 - - pentraxin 3 [Source:NCBI gene;Acc:548626]
4. TSPAN12 ENSGALG00000009029 2145 0.859 - - - - - - - 0.859 - - tetraspanin 12 [Source:NCBI gene;Acc:417763]
5. LIFR ENSGALG00000003733 4391 0.856 - - - - - - - 0.856 - - leukemia inhibitory factor receptor alpha [Source:NCBI gene;Acc:395262]
6. MYOCD ENSGALG00000001021 351 0.846 - - - - - - - 0.846 - - myocardin [Source:NCBI gene;Acc:427790]
7. DPYSL3 ENSGALG00000007582 7743 0.839 - - - - - - - 0.839 - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
8. NPNT ENSGALG00000043555 3002 0.837 - - - - - - - 0.837 - - nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
9. PDLIM7 ENSGALG00000026159 4700 0.816 - - - - - - - 0.816 - - PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]
10. SRF ENSGALG00000032029 6983 0.805 - - - - - - - 0.805 - - serum response factor [Source:NCBI gene;Acc:396103]
11. PLOD1 ENSGALG00000004531 8256 0.803 - - - - - - - 0.803 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 [Source:NCBI gene;Acc:419485]
12. ACBD5 ENSGALG00000007519 1646 0.796 - - - - - - - 0.796 - - acyl-CoA binding domain containing 5 [Source:NCBI gene;Acc:420488]
13. CERK ENSGALG00000019397 4511 0.793 - - - - - - 0.793 - - - ceramide kinase [Source:NCBI gene;Acc:425523]
14. CDKN1B ENSGALG00000022980 4606 0.793 - - - - - - 0.793 - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
15. BRT-1 BRT-1 26083 0.788 - - - - - - - 0.788 - -
16. IL1RL1 ENSGALG00000016785 928 0.786 - - - - - - - 0.786 - - interleukin 1 receptor like 1 [Source:NCBI gene;Acc:374136]
17. FBXO7 ENSGALG00000012569 4124 0.785 - - - - - - - 0.785 - - F-box protein 7 [Source:NCBI gene;Acc:418063]
18. ANGPTL1 ENSGALG00000004290 1922 0.784 - - - - - - - - - 0.784 angiopoietin like 1 [Source:NCBI gene;Acc:770850]
19. ATG4C ENSGALG00000010985 6102 0.783 - - - - - - 0.783 - - - autophagy related 4C cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16040]
20. ENSGALG00000011687 ENSGALG00000011687 4553 0.781 - - - - - - - 0.781 - -
21. ITPK1 ENSGALG00000034898 4212 0.776 - - - - - - - 0.776 - - inositol-tetrakisphosphate 1-kinase [Source:NCBI gene;Acc:423421]
22. DNAL1 ENSGALG00000028568 124 0.773 - - - - - 0.773 - - - - dynein axonemal light chain 1 [Source:NCBI gene;Acc:423246]
23. RAB6A ENSGALG00000017320 10569 0.769 - - - - - - 0.769 - - - RAB6A, member RAS oncogene family [Source:NCBI gene;Acc:419063]
24. WARS2 ENSGALG00000014772 29 0.763 - - - - - 0.763 - - - - tryptophanyl tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12730]
25. MYC ENSGALG00000033631 16949 0.758 - - - - - - 0.758 - - - MYC proto-oncogene, bHLH transcription factor [Source:NCBI gene;Acc:420332]
26. IGBP1 ENSGALG00000044628 9200 0.758 - - - - - - - 0.758 - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
27. COL1A2 ENSGALG00000009641 46236 0.753 - - - - 0.753 - - - - - collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
28. EDN1 ENSGALG00000012735 654 0.75 - - - - - - - 0.750 - - endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]
29. NBEA 1982 0.75 - - - - - - - 0.750 - - neurobeachin, transcript variant X10
30. CLMP ENSGALG00000006507 8079 0.747 - - - - - - - 0.747 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
31. AIF1L ENSGALG00000029834 13866 0.747 - - - - - - - - - 0.747 allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
32. TTC8 ENSGALG00000010663 1556 0.747 - - - - - - - 0.747 - - tetratricopeptide repeat domain 8 [Source:HGNC Symbol;Acc:HGNC:20087]
33. MED24 ENSGALG00000013506 5403 0.745 - - - - - - 0.745 - - - mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
34. COL8A1 ENSGALG00000015253 2505 0.743 - - - - - - - - - 0.743 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
35. CRTAP ENSGALG00000034163 6453 0.743 - - - - - - - 0.743 - - cartilage associated protein [Source:NCBI gene;Acc:395992]
36. NSDHL ENSGALG00000007493 3126 0.739 - - - - - - 0.739 - - - NAD(P) dependent steroid dehydrogenase-like [Source:HGNC Symbol;Acc:HGNC:13398]
37. PLEKHH2 ENSGALG00000009947 6384 0.739 - - - - - - - 0.739 - - pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
38. TMC3 ENSGALG00000006376 12 0.737 - - - - - 0.737 - - - - transmembrane channel like 3 [Source:NCBI gene;Acc:415470]
39. PACS1 ENSGALG00000008567 1423 0.736 - - - - - - 0.736 - - - phosphofurin acidic cluster sorting protein 1, transcript variant X3
40. LUM ENSGALG00000011271 44020 0.735 - - - - 0.735 - - - - - lumican [Source:NCBI gene;Acc:417891]
41. TBCE ENSGALG00000013950 3076 0.733 - - - - - - 0.733 - - - tubulin folding cofactor E
42. SOX11 ENSGALG00000016397 12144 0.73 - - - - - - 0.730 - - - SRY-box 11 [Source:NCBI gene;Acc:396104]
43. TTC38 ENSGALG00000014551 1135 0.73 - - - - - - - 0.730 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
44. UPF1 ENSGALG00000003220 9496 0.73 - - - - - - - 0.730 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
45. RNH1 ENSGALG00000006904 14542 0.729 - - - - - - - 0.729 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
46. PROKR2 ENSGALG00000008741 72 0.728 - - - - - - 0.728 - - - prokineticin receptor 2 [Source:NCBI gene;Acc:421263]
47. CPT2 ENSGALG00000010681 3211 0.726 - - - - - - - 0.726 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
48. ALAS1 3660 0.725 - - - - - - - 0.725 - - 5'-aminolevulinate synthase 1, transcript variant X1
49. FGFR3 ENSGALG00000015708 16853 0.725 - - - - - - - 0.725 - - fibroblast growth factor receptor 3 [Source:NCBI gene;Acc:396515]
50. NDNF ENSGALG00000011962 2261 0.724 - - - - - - 0.724 - - - neuron-derived neurotrophic factor, transcript variant X4
51. GNG12 ENSGALG00000026591 5817 0.724 - - - - - - - 0.724 - - G protein subunit gamma 12, transcript variant X21
52. FAM110D ENSGALG00000046085 2193 0.724 - - - - - - 0.724 - - - family with sequence similarity 110 member D [Source:HGNC Symbol;Acc:HGNC:25860]
53. Sep-11 Sep-11 2005 0.723 - - - - - - - - - 0.723
54. EMCN EMCN 2637 0.723 - - - - - - 0.723 - - -
55. PCDH17 ENSGALG00000016941 1006 0.723 - - - - - - - - - 0.723 protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
56. LYPLA2 ENSGALG00000004002 3939 0.723 - - - - - - 0.723 - - - lysophospholipase II [Source:NCBI gene;Acc:419685]
57. SH3TC1 ENSGALG00000015568 484 0.722 - - - - - - - 0.722 - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
58. RBBP8NL ENSGALG00000045938 89 0.722 - - - - - 0.722 - - - - RBBP8 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16144]
59. UBE2D1 ENSGALG00000021213 5876 0.722 - - - - - - 0.722 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
60. PHF2 ENSGALG00000039208 2003 0.721 - - - - - - - 0.721 - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
61. LARP1B ENSGALG00000010207 2935 0.72 - - - - - - 0.720 - - - La ribonucleoprotein domain family member 1B [Source:HGNC Symbol;Acc:HGNC:24704]
62. UBE2H ENSGALG00000031975 12964 0.72 - - - - - - - 0.720 - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
63. RCAN3 ENSGALG00000004282 7778 0.718 - - - - - - - 0.718 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
64. LOC426385 ENSGALG00000026301 2703 0.718 - - - - - - 0.718 - - - serine/threonine kinase 35-like, transcript variant X2
65. RUNX1T1 ENSGALG00000033091 17529 0.718 - - - - - - 0.718 - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
66. MMP2 ENSGALG00000003580 13120 0.717 - - - - - - - 0.717 - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
67. SIRT1 ENSGALG00000002761 9028 0.715 - - - - - - - 0.715 - - sirtuin 1 [Source:NCBI gene;Acc:423646]
68. TGFBR3 ENSGALG00000006038 2951 0.715 - - - - - - - 0.715 - - transforming growth factor beta receptor 3 [Source:NCBI gene;Acc:374251]
69. HYAL1 ENSGALG00000000785 1778 0.715 - - - - - - - 0.715 - - hyaluronoglucosaminidase 1, transcript variant X3
70. ARFIP2 ENSGALG00000037839 4831 0.714 - - - - - - 0.714 - - - ADP ribosylation factor interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:17160]
71. COL6A1 ENSGALG00000005974 1991 0.713 - - - - 0.713 - - - - - collagen type VI alpha 1 chain [Source:NCBI gene;Acc:396000]
72. MAN2A1 ENSGALG00000000255 4543 0.711 - - - - - - 0.711 - - - mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
73. C1orf174 ENSGALG00000000975 4947 0.71 - - - - - - 0.710 - - - chromosome 1 open reading frame 174 [Source:HGNC Symbol;Acc:HGNC:27915]
74. RIOK1 ENSGALG00000012795 4658 0.71 - - - - - - 0.710 - - - RIO kinase 1 [Source:HGNC Symbol;Acc:HGNC:18656]
75. ANKRD10 ENSGALG00000030125 3611 0.71 - - - - - - 0.710 - - - ankyrin repeat domain 10 [Source:NCBI gene;Acc:418760]
76. TPD52 ENSGALG00000040167 9891 0.708 - - - - - - 0.708 - - - tumor protein D52 [Source:NCBI gene;Acc:770339]
77. TMTC2 ENSGALG00000010975 7040 0.708 - - - - - - 0.708 - - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
78. MXD4 ENSGALG00000015688 1472 0.708 - - - - - - 0.708 - - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
79. DAGLB ENSGALG00000007119 1224 0.707 - - - - - - 0.707 - - - diacylglycerol lipase beta [Source:NCBI gene;Acc:416625]
80. ITGA4 ENSGALG00000041577 109 0.707 - - - - - - - - - 0.707 integrin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6140]
81. NEK6 ENSGALG00000001118 20333 0.707 - - - - - - 0.707 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
82. BCAS3 ENSGALG00000005295 2595 0.706 - - - - - - - 0.706 - - BCAS3, microtubule associated cell migration factor [Source:HGNC Symbol;Acc:HGNC:14347]
83. SLC39A11 ENSGALG00000004413 2581 0.706 - - - - - - 0.706 - - - solute carrier family 39 member 11 [Source:HGNC Symbol;Acc:HGNC:14463]
84. EVL ENSGALG00000011209 5440 0.706 - - - - - - 0.706 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
85. LXR LXR 2599 0.704 - - - - - - 0.704 - - -
86. TNFRSF1B ENSGALG00000034213 780 0.704 - - - - - - - 0.704 - - TNF receptor superfamily member 1B [Source:NCBI gene;Acc:395083]
87. AP2M1 ENSGALG00000008432 16249 0.703 - - - - - - - 0.703 - - adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
88. ABCB7 ENSGALG00000007788 170 0.703 - - - - - - - - - 0.703 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
89. RHOBTB2 ENSGALG00000034020 7878 0.702 - - - - - - 0.702 - - - Rho related BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18756]
90. RXRG ENSGALG00000040730 776 0.702 - - - - - - 0.702 - - - retinoid X receptor gamma [Source:NCBI gene;Acc:396231]
91. NRBP2 ENSGALG00000029760 1902 0.702 - - - - - - 0.702 - - - nuclear receptor binding protein 2 [Source:HGNC Symbol;Acc:HGNC:19339]
92. PPP1R2 ENSGALG00000029789 11594 0.701 - - - - - - 0.701 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
93. ANKRD11 ENSGALG00000006222 12327 0.701 0.701 - - - - - - - - - ankyrin repeat domain 11, transcript variant X2
94. STOML2 STOML2 15566 0.701 - - - - - - - 0.701 - -
95. PHF10 ENSGALG00000011192 361 0.701 - - - - - - 0.701 - - - PHD finger protein 10 [Source:HGNC Symbol;Acc:HGNC:18250]
96. MGAT5 ENSGALG00000012187 432 0.7 - - - - - - 0.700 - - - mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, transcript variant X3
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA