Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL6A1

Gene Name Gene ID Reads Annotation
COL6A1 ENSGALG00000005974 1991 collagen type VI alpha 1 chain [Source:NCBI gene;Acc:396000]











Genes with expression patterns similar to COL6A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL6A1 ENSGALG00000005974 1991 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type VI alpha 1 chain [Source:NCBI gene;Acc:396000]
2. KIAA0930 ENSGALG00000014226 1243 1.748 - - 0.889 - - - - 0.859 - - KIAA0930 [Source:HGNC Symbol;Acc:HGNC:1314]
3. LGALS3 ENSGALG00000012173 3306 1.745 - - 0.910 - - - - 0.835 - - galectin 3 [Source:NCBI gene;Acc:373917]
4. DBR1 ENSGALG00000043797 1896 1.743 - - 0.889 - - - - 0.854 - - debranching RNA lariats 1 [Source:NCBI gene;Acc:429118]
5. B3GNT7 ENSGALG00000007701 929 1.715 - - 0.864 - - - - 0.851 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
6. ATP2B2 ENSGALG00000030908 584 1.664 - - 0.882 - - - - 0.782 - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
7. ENSGALG00000004032 ENSGALG00000004032 2010 1.65 - - 0.783 - - - - 0.867 - -
8. BTAF1 ENSGALG00000030598 3556 1.616 - - 0.791 - - - - 0.825 - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
9. USP40 ENSGALG00000004228 1137 1.606 - - 0.898 - - - 0.708 - - - ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]
10. TMEM214 ENSGALG00000022850 7943 1.602 - - 0.752 - - - - 0.850 - - transmembrane protein 214 [Source:HGNC Symbol;Acc:HGNC:25983]
11. GRAMD1C ENSGALG00000035629 2494 1.597 - - 0.747 - - - - 0.850 - - GRAM domain containing 1C [Source:HGNC Symbol;Acc:HGNC:25252]
12. NXT2 ENSGALG00000008092 2477 1.578 - - 0.744 - - - - 0.834 - - nuclear transport factor 2 like export factor 2 [Source:NCBI gene;Acc:422346]
13. ALDH7A1 ENSGALG00000008229 5891 1.568 - - 0.776 - - - - 0.792 - - aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
14. MAST4 ENSGALG00000014784 4153 1.543 - - 0.758 - - - - - - 0.785 microtubule associated serine/threonine kinase family member 4 [Source:HGNC Symbol;Acc:HGNC:19037]
15. ADAT2 ENSGALG00000019976 4169 1.501 - - - - - - - 0.791 - 0.710 adenosine deaminase, tRNA specific 2
16. GARNL3 ENSGALG00000000847 3423 1.481 - - 0.750 - - - - - - 0.731 GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
17. HDHD3 ENSGALG00000044101 6333 1.48 - - 0.736 - - - - 0.744 - - haloacid dehalogenase like hydrolase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28171]
18. RANBP3 ENSGALG00000000577 8856 1.424 - - 0.713 - - - - 0.711 - - RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
19. PVALB1 PVALB1 267 0.924 - - 0.924 - - - - - - -
20. CASP9 ENSGALG00000001366 1356 0.923 - - 0.923 - - - - - - - caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]
21. MSRB1 ENSGALG00000005414 4197 0.92 - - - - - - - 0.920 - - methionine sulfoxide reductase B1 [Source:NCBI gene;Acc:416540]
22. YLPM1 671 0.918 - - 0.918 - - - - - - - YLP motif containing 1
23. C-MET C-MET 1650 0.912 - - 0.912 - - - - - - -
24. DZIP1 ENSGALG00000016895 681 0.912 - - 0.912 - - - - - - - DAZ interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:20908]
25. FA2H ENSGALG00000002775 396 0.912 - - - - - - - 0.912 - - fatty acid 2-hydroxylase [Source:HGNC Symbol;Acc:HGNC:21197]
26. LDHA ENSGALG00000006300 4796 0.911 - - - - - - - 0.911 - - lactate dehydrogenase A [Source:NCBI gene;Acc:396221]
27. PLD1 ENSGALG00000009252 2331 0.91 - - - - - - - 0.910 - - phospholipase D1, transcript variant X5
28. C5H14ORF166 C5H14ORF166 24176 0.909 - - 0.909 - - - - - - -
29. TMEM200C ENSGALG00000030210 1434 0.909 - - 0.909 - - - - - - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
30. AGPAT9 AGPAT9 1823 0.909 - - 0.909 - - - - - - -
31. PCP4 ENSGALG00000022819 880 0.908 - - 0.908 - - - - - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
32. PKP4 ENSGALG00000012561 3087 0.907 - - 0.907 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
33. TRANK1 ENSGALG00000037629 2268 0.905 - - 0.905 - - - - - - - tetratricopeptide repeat and ankyrin repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:29011]
34. PTPN5 ENSGALG00000006368 440 0.905 - - 0.905 - - - - - - - protein tyrosine phosphatase, non-receptor type 5 [Source:HGNC Symbol;Acc:HGNC:9657]
35. CXorf30 CXorf30 172 0.904 - - 0.904 - - - - - - -
36. PDCD4 ENSGALG00000008700 574 0.901 - - 0.901 - - - - - - - programmed cell death 4 [Source:NCBI gene;Acc:374191]
37. TSEN2 ENSGALG00000004981 1929 0.899 - - 0.899 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
38. RHOC ENSGALG00000001569 53 0.898 - - 0.898 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
39. KIAA0195 KIAA0195 48 0.898 - - 0.898 - - - - - - -
40. INTS9 ENSGALG00000016631 742 0.898 - - 0.898 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
41. POMC ENSGALG00000016600 99 0.898 - - 0.898 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
42. ECI2 ENSGALG00000012809 3692 0.898 - - - - - - - 0.898 - - enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:HGNC:14601]
43. ENSGALG00000028359 ENSGALG00000028359 479 0.897 - - 0.897 - - - - - - -
44. GRIK3 ENSGALG00000002098 111 0.897 - - 0.897 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
45. MAPKKK3L ENSGALG00000005884 1011 0.897 - - - - - - - 0.897 - - mitogen-activated protein kinase kinase kinase 3-like [Source:NCBI gene;Acc:420419]
46. CHKA ENSGALG00000036754 5077 0.897 - - - - - - - 0.897 - - choline kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]
47. MGMT ENSGALG00000042949 53 0.897 - - 0.897 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
48. ABCB10 ENSGALG00000011096 1407 0.896 - - - - - - - 0.896 - - ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41]
49. ITPR1 ENSGALG00000008294 1226 0.896 - - 0.896 - - - - - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
50. PLEKHG5 ENSGALG00000027476 42 0.895 - - 0.895 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
51. ADAMTS2 ENSGALG00000032974 141 0.894 - - 0.894 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
52. ENSGALG00000023180 ENSGALG00000023180 83 0.894 - - 0.894 - - - - - - -
53. GOLGA2 ENSGALG00000004881 677 0.894 - - 0.894 - - - - - - - golgin A2, transcript variant X7
54. HSDL1 ENSGALG00000003273 1108 0.894 - - - - - - - 0.894 - - hydroxysteroid dehydrogenase like 1 [Source:NCBI gene;Acc:415703]
55. LZIC ENSGALG00000002616 9052 0.893 - - 0.893 - - - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
56. SETD3 ENSGALG00000034802 4125 0.893 - - 0.893 - - - - - - - SET domain containing 3 [Source:NCBI gene;Acc:423445]
57. CASP1 ENSGALG00000001049 1067 0.892 - - 0.892 - - - - - - - caspase 1, transcript variant X2
58. DLX5 ENSGALG00000009129 1395 0.892 - - 0.892 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
59. MT1 MT1 218 0.891 - - 0.891 - - - - - - -
60. GJB6 ENSGALG00000017136 500 0.891 - - - - - - - 0.891 - - gap junction protein beta 6 [Source:NCBI gene;Acc:395771]
61. C4BPA ENSGALG00000001175 4278 0.89 - - - - - - - 0.890 - - complement component 4 binding protein, alpha [Source:NCBI gene;Acc:395384]
62. NLGN1 ENSGALG00000040938 651 0.889 - - 0.889 - - - - - - - neuroligin 1 [Source:NCBI gene;Acc:424980]
63. FURIN ENSGALG00000008341 2609 0.889 - - 0.889 - - - - - - - furin, paired basic amino acid cleaving enzyme [Source:NCBI gene;Acc:395457]
64. WBSCR17 581 0.888 - - 0.888 - - - - - - - Williams-Beuren syndrome chromosome region 17, transcript variant X1
65. FBXO34 ENSGALG00000032563 656 0.887 - - 0.887 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
66. SATB1 ENSGALG00000011254 1377 0.887 - - - - - - - 0.887 - - SATB homeobox 1 [Source:NCBI gene;Acc:420647]
67. EDA ENSGALG00000035966 602 0.886 - - - - - - - 0.886 - - ectodysplasin A [Source:HGNC Symbol;Acc:HGNC:3157]
68. ENTPD5 ENSGALG00000010202 69 0.885 - - 0.885 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
69. SULT2B1L1 ENSGALG00000023472 569 0.883 - - 0.883 - - - - - - - sulfotransferase family cytosolic 2B member 1-like 1
70. LRR1 ENSGALG00000012230 1062 0.883 - - 0.883 - - - - - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
71. SNX2 ENSGALG00000005337 590 0.882 - - 0.882 - - - - - - - sorting nexin 2 [Source:NCBI gene;Acc:426797]
72. IP6K1 ENSGALG00000002510 827 0.881 - - 0.881 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
73. ETV4 ENSGALG00000036678 2424 0.881 - - 0.881 - - - - - - - ETS variant 4 [Source:HGNC Symbol;Acc:HGNC:3493]
74. INVS ENSGALG00000013441 1123 0.881 - - 0.881 - - - - - - - inversin [Source:NCBI gene;Acc:395234]
75. ACOT9 ENSGALG00000016351 330 0.881 - - 0.881 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
76. ISCU ENSGALG00000004869 6852 0.881 - - 0.881 - - - - - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
77. EXTL2 ENSGALG00000027984 808 0.88 - - 0.880 - - - - - - - exostosin like glycosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:3516]
78. BMP4 ENSGALG00000012429 4306 0.88 - - 0.880 - - - - - - - bone morphogenetic protein 4 [Source:NCBI gene;Acc:396165]
79. NCAPD3 ENSGALG00000001491 221 0.88 - - 0.880 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
80. WDR11 ENSGALG00000035013 3393 0.88 - - 0.880 - - - - - - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
81. SORCS1 ENSGALG00000008465 468 0.88 - - 0.880 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
82. PCMTD2 ENSGALG00000005901 1833 0.88 - - 0.880 - - - - - - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
83. SLC4A4 ENSGALG00000031105 534 0.879 - - 0.879 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
84. ZEB2 ENSGALG00000040465 315 0.878 - - 0.878 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
85. MAN1A1 ENSGALG00000014878 1061 0.877 - - 0.877 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
86. AMER1 ENSGALG00000007599 994 0.877 - - - - - - - 0.877 - - APC membrane recruitment protein 1 [Source:HGNC Symbol;Acc:HGNC:26837]
87. CCDC25 ENSGALG00000016586 351 0.877 - - 0.877 - - - - - - - coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:HGNC:25591]
88. ENSGALG00000001854 ENSGALG00000001854 965 0.877 - - - - - - - 0.877 - -
89. AP3M1 ENSGALG00000005070 712 0.877 - - 0.877 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
90. SOX5 ENSGALG00000032768 998 0.877 - - - - - - - 0.877 - - SRY-box 5 [Source:NCBI gene;Acc:418195]
91. LHFP 167 0.877 - - 0.877 - - - - - - - lipoma HMGIC fusion partner
92. BCAS1 ENSGALG00000007796 379 0.876 - - - - - - - 0.876 - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
93. IKZF5 ENSGALG00000032289 993 0.876 - - - - - - - 0.876 - - IKAROS family zinc finger 5 [Source:NCBI gene;Acc:430882]
94. ZYX ENSGALG00000014688 8686 0.875 - - - - - - - 0.875 - - zyxin [Source:NCBI gene;Acc:418300]
95. BARX2B BARX2B 1983 0.875 - - 0.875 - - - - - - -
96. CENPC1 CENPC1 3324 0.875 - - - - - - - 0.875 - -
97. TES ENSGALG00000031934 5908 0.874 - - - - - - - 0.874 - - testin LIM domain protein [Source:NCBI gene;Acc:395332]
98. WBSCR27 3511 0.874 - - - - - - - 0.874 - - Williams Beuren syndrome chromosome region 27
99. GBGT1 ENSGALG00000003340 399 0.873 - - 0.873 - - - - - - - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [Source:NCBI gene;Acc:417163]
100. OLFML2A ENSGALG00000001048 1329 0.873 - - - - - - - 0.873 - - olfactomedin like 2A [Source:HGNC Symbol;Acc:HGNC:27270]

There are 486 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA