Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for COL5A3

Gene Name Gene ID Reads Annotation
COL5A3 COL5A3 3










Genes with expression patterns similar to COL5A3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:dkey-30c15.12 ENSDARG00000058546 12 1 - - - - 1.000 - - - - si:dkey-30c15.12 [Source:ZFIN;Acc:ZDB-GENE-060503-920]
2. COL5A3 COL5A3 3 1 - - - - 1.000 - - - -
3. prph2l ENSDARG00000021345 3 1 - - - - 1.000 - - - - peripherin 2, like [Source:ZFIN;Acc:ZDB-GENE-041001-147]
4. ankrd1b ENSDARG00000076192 204 1 - - - - 1.000 - - - - ankyrin repeat domain 1b (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-070820-13]
5. EFCAB10 EFCAB10 3 1 - - - - 1.000 - - - -
6. si:dkey-3d18.4 si:dkey-3d18.4 43 1 - - - - 1.000 - - - -
7. si:ch73-27e22.5 si:ch73-27e22.5 10 1 - - - - 1.000 - - - -
8. casp6l1 ENSDARG00000025608, ENSDARG00000117004 107 1 - - - - 1.000 - - - - caspase 6, apoptosis-related cysteine peptidase, like 1 [Source:ZFIN;Acc:ZDB-GENE-041010-48]
9. stk32a ENSDARG00000079499 17 1 - - - - 1.000 - - - - serine/threonine kinase 32A [Source:ZFIN;Acc:ZDB-GENE-091204-271]
10. si:dkey-26i13.8 ENSDARG00000062606 13 1 - - - - 1.000 - - - - si:dkey-26i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-134]
11. CR388163.4 CR388163.4 4 1 - - - - 1.000 - - - -
12. mxc ENSDARG00000024789 68 0.999 - - - - 0.999 - - - - myxovirus (influenza virus) resistance C [Source:ZFIN;Acc:ZDB-GENE-030721-7]
13. slc37a1 ENSDARG00000086103 16 0.999 - - - - 0.999 - - - - solute carrier family 37 (glucose-6-phosphate transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-041114-151]
14. ftr58 ENSDARG00000071238 10 0.999 - - - - 0.999 - - - - finTRIM family, member 58 [Source:ZFIN;Acc:ZDB-GENE-080219-44]
15. zgc:174708 zgc:174708 11 0.999 - - - - 0.999 - - - -
16. si:ch211-207e7.1 si:ch211-207e7.1 33 0.998 - - - - 0.998 - - - -
17. cngb3 cngb3 12 0.994 - - - - 0.994 - - - -
18. NEDD9 ENSDARG00000089878, ENSDARG00000116312 165 0.991 - - - - 0.991 - - - - neural precursor cell expressed, developmentally down-regulated 9 [Source:ZFIN;Acc:ZDB-GENE-061013-318]
19. DOCK1 ENSDARG00000099093 21 0.991 - - - - 0.991 - - - - dedicator of cytokinesis 1 [Source:ZFIN;Acc:ZDB-GENE-080108-5]
20. si:dkey-71h2.2 ENSDARG00000043394 11 0.99 - - - - 0.990 - - - - si:dkey-71h2.2 [Source:ZFIN;Acc:ZDB-GENE-041014-145]
21. RBBP6_8 RBBP6_8 10 0.987 - - - - 0.987 - - - -
22. mir15a-1 36 0.987 - - - - 0.987 - - - - microRNA 15a-1
23. GALNTL6 ENSDARG00000040048 33 0.985 - - - - 0.985 - - - - polypeptide N-acetylgalactosaminyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:33844]
24. FRMD7 ENSDARG00000068958 17 0.984 - - - - 0.984 - - - - FERM domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-060825-67]
25. cacna1g ENSDARG00000089913 19 0.98 - - - - 0.980 - - - - calcium channel, voltage-dependent, T type, alpha 1G subunit [Source:ZFIN;Acc:ZDB-GENE-090514-2]
26. pcmtd2 ENSDARG00000053820, ENSDARG00000113456 59 0.975 - - - - 0.975 - - - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060312-14]
27. wdr78 ENSDARG00000044400, ENSDARG00000109570 48 0.974 - - - - 0.974 - - - - WD repeat domain 78 [Source:ZFIN;Acc:ZDB-GENE-050522-322]
28. nedd9 ENSDARG00000089878, ENSDARG00000116312 41 0.973 - - - - 0.973 - - - - neural precursor cell expressed, developmentally down-regulated 9 [Source:ZFIN;Acc:ZDB-GENE-061013-318]
29. si:ch211-194e1.8 si:ch211-194e1.8 14 0.972 - - - - 0.972 - - - -
30. zgc:171704 ENSDARG00000018048 14 0.97 - - - - 0.970 - - - - zgc:171704 [Source:ZFIN;Acc:ZDB-GENE-070820-16]
31. hcar1-4 ENSDARG00000087084, ENSDARG00000113450 27 0.969 - - - - 0.969 - - - - hydroxycarboxylic acid receptor 1-4 [Source:ZFIN;Acc:ZDB-GENE-111111-10]
32. or111-5 ENSDARG00000091791 4 0.967 - - - - 0.967 - - - - odorant receptor, family D, subfamily 111, member 5 [Source:ZFIN;Acc:ZDB-GENE-000329-14]
33. CABZ01079015.1 CABZ01079015.1 10 0.967 - - - - 0.967 - - - -
34. c6_1 ENSDARG00000057113, ENSDARG00000093052, ENSDARG00000115290 284 0.96 - - - - 0.960 - - - - complement component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1358]
35. CU459095.1 CU459095.1 7 0.96 - - - - 0.960 - - - -
36. mb21d1 ENSDARG00000021572 12 0.96 - - - - 0.960 - - - - Mab-21 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-23]
37. si:dkey-192i18.3 si:dkey-192i18.3 47 0.951 - - - - 0.951 - - - -
38. wu:fd60c08 wu:fd60c08 35 0.95 - - - - 0.950 - - - -
39. dnah7 ENSDARG00000060165 21 0.95 - - - - 0.950 - - - - dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
40. CCL19 CCL19 6 0.949 - - - - 0.949 - - - -
41. rab3db ENSDARG00000101534 45 0.947 - - - - 0.947 - - - - RAB3D, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-040718-428]
42. RNaseP_nuc_1 RNaseP_nuc_1 19 0.945 - - - - 0.945 - - - -
43. lrtomt lrtomt 39 0.937 - - - - 0.937 - - - -
44. rbbp9 ENSDARG00000040713 12 0.934 - - - - 0.934 - - - - retinoblastoma binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-050208-692]
45. zgc:112408 ENSDARG00000016207, ENSDARG00000116632, ENSDARG00000117067 19 0.932 - - - - 0.932 - - - - zgc:112408 [Source:ZFIN;Acc:ZDB-GENE-050417-63]
46. pidd pidd 86 0.921 - - - - 0.921 - - - -
47. itpa ENSDARG00000057529 104 0.906 - - - - 0.906 - - - - inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]
48. rd3 ENSDARG00000031600 1085 0.901 - - - - 0.901 - - - - retinal degeneration 3, GUCY2D regulator [Source:ZFIN;Acc:ZDB-GENE-040724-103]
49. ABHD15 ABHD15 86 0.898 - - - - 0.898 - - - -
50. spata4_1 ENSDARG00000036189, ENSDARG00000114468 39 0.89 - - - - 0.890 - - - - spermatogenesis associated 4 [Source:ZFIN;Acc:ZDB-GENE-050417-153]
51. si:ch211-51n3.1 si:ch211-51n3.1 26 0.878 - - - - 0.878 - - - -
52. BX323793.1 ENSDARG00000104134 24 0.877 - - - - 0.877 - - - - 1-phosphatidylinositol phosphodiesterase-like [Source:NCBI gene;Acc:100331378]
53. map6 map6 70 0.877 - - - - 0.877 - - - -
54. lcp2b ENSDARG00000036215 15 0.877 - - - - 0.877 - - - - lymphocyte cytosolic protein 2b [Source:ZFIN;Acc:ZDB-GENE-081107-21]
55. gfpt1 ENSDARG00000057465 14 0.873 - - - - 0.873 - - - - glutamine--fructose-6-phosphate transaminase 1 [Source:ZFIN;Acc:ZDB-GENE-070423-1]
56. zgc:171426 ENSDARG00000074764 16 0.872 - - - - 0.872 - - - - zgc:171426 [Source:ZFIN;Acc:ZDB-GENE-080212-2]
57. BAIAP2L2 BAIAP2L2 31 0.87 - - - - 0.870 - - - -
58. COL21A1 ENSDARG00000025320 6 0.869 - - - - 0.869 - - - - collagen, type XXI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-110607-3]
59. GBF1 ENSDARG00000027016 30 0.868 - - - - 0.868 - - - - golgi brefeldin A resistant guanine nucleotide exchange factor 1 [Source:ZFIN;Acc:ZDB-GENE-081107-54]
60. magi2 magi2 301 0.864 - - - - 0.864 - - - -
61. zgc:112038 ENSDARG00000046140 73 0.86 - - - - 0.860 - - - - zgc:112038 [Source:ZFIN;Acc:ZDB-GENE-050522-271]
62. oxgr1a.1 ENSDARG00000033684 24 0.857 - - - - 0.857 - - - - oxoglutarate (alpha-ketoglutarate) receptor 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6734]
63. h1m ENSDARG00000102892 319 0.856 - - - - 0.856 - - - - linker histone H1M [Source:ZFIN;Acc:ZDB-GENE-030131-5614]
64. si:dkey-241l7.10 si:dkey-241l7.10 38 0.853 - - - - 0.853 - - - -
65. CU181898.3 CU181898.3 440 0.85 - - - - 0.850 - - - -
66. ncf4 ENSDARG00000040812, ENSDARG00000110339 45 0.849 - - - - 0.849 - - - - neutrophil cytosolic factor 4 [Source:ZFIN;Acc:ZDB-GENE-041124-1]
67. gng8 ENSDARG00000042970 117 0.845 - - - - 0.845 - - - - guanine nucleotide binding protein (G protein), gamma 8 [Source:ZFIN;Acc:ZDB-GENE-050522-312]
68. zgc:113098 zgc:113098 22 0.836 - - - - 0.836 - - - -
69. CPXM1 CPXM1 201 0.833 - - - - 0.833 - - - -
70. si:dkeyp-51f12.2 ENSDARG00000095606 24 0.824 - - - - 0.824 - - - - si:dkeyp-51f12.2 [Source:ZFIN;Acc:ZDB-GENE-070705-546]
71. gro1 gro1 81 0.823 - - - - 0.823 - - - -
72. glud1b ENSDARG00000101074 189 0.823 - - - - 0.823 - - - - glutamate dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030828-1]
73. si:ch211-207d6.2 ENSDARG00000031658 93 0.816 - - - - 0.816 - - - - si:ch211-207d6.2 [Source:ZFIN;Acc:ZDB-GENE-070912-185]
74. CABZ01093075.1 ENSDARG00000086616 251 0.797 - - - - 0.797 - - - - cabz01093075.1 [Source:ZFIN;Acc:ZDB-GENE-160113-9]
75. hgfb ENSDARG00000079076 168 0.794 - - - - 0.794 - - - - hepatocyte growth factor b [Source:ZFIN;Acc:ZDB-GENE-041014-3]
76. CR388046.3 ENSDARG00000105537 108 0.791 - - - - 0.791 - - - -
77. SGSM2 ENSDARG00000063307, ENSDARG00000110752 150 0.786 - - - - 0.786 - - - - small G protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-131119-52]
78. BTBD17 BTBD17 53 0.785 - - - - 0.785 - - - -
79. nupl2 ENSDARG00000029043 105 0.783 - - - - 0.783 - - - - nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
80. glipr1b ENSDARG00000030078 73 0.782 - - - - 0.782 - - - - GLI pathogenesis-related 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1459]
81. zgc:173575 ENSDARG00000078281, ENSDARG00000115456 190 0.777 - - - - 0.777 - - - - zgc:173575 [Source:ZFIN;Acc:ZDB-GENE-080218-25]
82. phf23b ENSDARG00000036305 1073 0.776 - - - - 0.776 - - - - PHD finger protein 23b [Source:ZFIN;Acc:ZDB-GENE-030131-5895]
83. si:dkey-68l7.1 si:dkey-68l7.1 159 0.773 - - - - 0.773 - - - -
84. tex15 ENSDARG00000098929 60 0.772 - - - - 0.772 - - - - testis expressed 15 [Source:ZFIN;Acc:ZDB-GENE-091204-395]
85. si:ch211-149b19.2 ENSDARG00000088882 28 0.77 - - - - 0.770 - - - - si:ch211-149b19.2 [Source:ZFIN;Acc:ZDB-GENE-110411-60]
86. dtymk ENSDARG00000052103 239 0.768 - - - - 0.768 - - - - deoxythymidylate kinase (thymidylate kinase) [Source:ZFIN;Acc:ZDB-GENE-990603-11]
87. plod3_1 ENSDARG00000076317 80 0.767 - - - - 0.767 - - - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-021031-4]
88. BX548021.2_1 BX548021.2_1 164 0.764 - - - - 0.764 - - - -
89. mpp6a ENSDARG00000056892 324 0.763 - - - - 0.763 - - - - membrane protein, palmitoylated 6a (MAGUK p55 subfamily member 6) [Source:ZFIN;Acc:ZDB-GENE-050506-35]
90. cbr1 ENSDARG00000036587 78 0.761 - - - - 0.761 - - - - carbonyl reductase 1 [Source:ZFIN;Acc:ZDB-GENE-030902-2]
91. LSM5 ENSDARG00000071573 371 0.759 - - - - 0.759 - - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]
92. dkk3b ENSDARG00000070683 209 0.756 - - - - 0.756 - - - - dickkopf WNT signaling pathway inhibitor 3b [Source:ZFIN;Acc:ZDB-GENE-061207-74]
93. efemp2b_1 ENSDARG00000020811 77 0.756 - - - - 0.756 - - - - EGF containing fibulin extracellular matrix protein 2b [Source:ZFIN;Acc:ZDB-GENE-030219-125]
94. apbb1ip ENSDARG00000016505 224 0.752 - - - - 0.752 - - - - amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-1318]
95. arhgap17a ENSDARG00000020488, ENSDARG00000113457 11 0.752 - - - - 0.752 - - - - Rho GTPase activating protein 17a [Source:ZFIN;Acc:ZDB-GENE-050417-56]
96. SLC39A8 ENSDARG00000056757 52 0.749 - - - - 0.749 - - - - solute carrier family 39 (zinc transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-050419-124]
97. si:ch211-113a14.19_3 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 31 0.749 - - - - 0.749 - - - - si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
98. zgc:114037 63 0.746 - - - - 0.746 - - - - zgc:114037
99. ITPA ENSDARG00000057529 493 0.744 - - - - 0.744 - - - - inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:ZFIN;Acc:ZDB-GENE-070705-218]
100. si:ch211-149b19.4 ENSDARG00000095911 49 0.744 - - - - 0.744 - - - - si:ch211-149b19.4 [Source:ZFIN;Acc:ZDB-GENE-110411-90]

There are 17 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA