Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL5A1

Gene Name Gene ID Reads Annotation
COL5A1 ENSGALG00000002546 9942 collagen type V alpha 1 chain [Source:NCBI gene;Acc:395568]











Genes with expression patterns similar to COL5A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL5A1 ENSGALG00000002546 9942 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type V alpha 1 chain [Source:NCBI gene;Acc:395568]
2. PWWP2A ENSGALG00000038202 3686 1.598 - - - - - - 0.773 0.825 - - PWWP domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29406]
3. TMEM87A ENSGALG00000009018 8027 1.578 - - - - - - 0.769 0.809 - - transmembrane protein 87A [Source:HGNC Symbol;Acc:HGNC:24522]
4. PALLD ENSGALG00000009650 10803 1.521 - - - - - - 0.745 0.776 - - palladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]
5. MAPK9 ENSGALG00000039099 5467 1.509 - - - - - - 0.716 0.793 - - mitogen-activated protein kinase 9 [Source:NCBI gene;Acc:395983]
6. CEP170 ENSGALG00000010733 4177 1.48 - - - - - - 0.763 0.717 - - centrosomal protein 170 [Source:HGNC Symbol;Acc:HGNC:28920]
7. NDUFAF1 ENSGALG00000008587 14779 1.43 - - - - - - 0.703 0.727 - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
8. BTG1 ENSGALG00000011276 17496 0.878 - - - - - - - 0.878 - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
9. DKK3 ENSGALG00000005551 7807 0.877 - - - - - - - 0.877 - - dickkopf WNT signaling pathway inhibitor 3 [Source:NCBI gene;Acc:396023]
10. OAF ENSGALG00000006715 12518 0.865 - - - - - - - 0.865 - - out at first homolog [Source:NCBI gene;Acc:395161]
11. ELOVL1 ENSGALG00000009988 4000 0.862 - - - - - - - 0.862 - - ELOVL fatty acid elongase 1 [Source:NCBI gene;Acc:424564]
12. PAN3 ENSGALG00000017092 5387 0.835 - - - - - - - 0.835 - - poly(A) specific ribonuclease subunit PAN3 [Source:HGNC Symbol;Acc:HGNC:29991]
13. PCDHGC3 ENSGALG00000028565 18583 0.833 - - - - - - 0.833 - - - Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001245037]
14. SUV39H2 ENSGALG00000013920 4360 0.822 - - - - - - 0.822 - - - suppressor of variegation 3-9 homolog 2 [Source:NCBI gene;Acc:426314]
15. SLC35E3 ENSGALG00000009940 8560 0.814 - - - - - - - 0.814 - - solute carrier family 35 member E3 [Source:NCBI gene;Acc:417842]
16. FAM207A ENSGALG00000007513 8748 0.813 - - - - - - 0.813 - - - family with sequence similarity 207 member A [Source:HGNC Symbol;Acc:HGNC:15811]
17. MARC1 ENSGALG00000009453 5675 0.811 - - - - - - - 0.811 - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
18. GFPT1 ENSGALG00000036391 14025 0.811 - - - - - - - 0.811 - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
19. CHMP3 ENSGALG00000015805 11581 0.809 - - - - - - - 0.809 - - charged multivesicular body protein 3
20. GLG1 ENSGALG00000039818 6221 0.808 - - - - - - - 0.808 - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
21. WRN ENSGALG00000040909 3645 0.806 - - - - - - - 0.806 - - Werner syndrome RecQ like helicase [Source:NCBI gene;Acc:422505]
22. SCO1 ENSGALG00000030475 7304 0.804 - - - - - - - 0.804 - - SCO1, cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:HGNC:10603]
23. NDUFB8 ENSGALG00000005704 5781 0.803 - - - - - - - 0.803 - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
24. PUM1 ENSGALG00000042598 9392 0.803 - - - - - - 0.803 - - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
25. KCNB1 ENSGALG00000004758 620 0.801 - - - - - - - 0.801 - - potassium voltage-gated channel subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:6231]
26. CDC42BPA ENSGALG00000009158 3926 0.8 - - - - - - - 0.800 - - CDC42 binding protein kinase alpha [Source:NCBI gene;Acc:416746]
27. TSC22D2 ENSGALG00000027591 6594 0.798 - - - - - - - 0.798 - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
28. TMEM39B ENSGALG00000003287 4125 0.797 - - - - - - 0.797 - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
29. TADA1L TADA1L 6659 0.794 - - - - - - 0.794 - - -
30. CPQ ENSGALG00000030866 3962 0.791 - - - - - - - 0.791 - - carboxypeptidase Q [Source:NCBI gene;Acc:420238]
31. C1orf198 ENSGALG00000026600 5651 0.789 - - - - - - 0.789 - - - chromosome 1 open reading frame 198 [Source:HGNC Symbol;Acc:HGNC:25900]
32. SNAP29 ENSGALG00000040128 3581 0.789 - - - - - - - 0.789 - - synaptosome associated protein 29 [Source:NCBI gene;Acc:416766]
33. CAB39 ENSGALG00000027262 6779 0.789 - - - - - - - 0.789 - - calcium binding protein 39 [Source:HGNC Symbol;Acc:HGNC:20292]
34. CAMSAP2 ENSGALG00000002145 6109 0.788 - - - - - - - 0.788 - - calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
35. PPCS ENSGALG00000004882 5759 0.788 - - - - - - - 0.788 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
36. FBXO33 ENSGALG00000010192 2917 0.788 - - - - - - - 0.788 - - F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]
37. UFD1L 12964 0.787 - - - - - - 0.787 - - - ubiquitin fusion degradation 1 like (yeast)
38. LGALS2 ENSGALG00000003213 1089 0.787 - - - - - - - 0.787 - - galectin 2, transcript variant X2
39. DYNC1H1 ENSGALG00000011330 16400 0.786 - - - - - - 0.786 - - - dynein cytoplasmic 1 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2961]
40. WASH1 WASH1 3240 0.786 - - - - - - - 0.786 - -
41. SLC25A1 ENSGALG00000041760 4744 0.786 - - - - - - - 0.786 - - solute carrier family 25 member 1, transcript variant X2
42. TPP2 ENSGALG00000016865 7509 0.785 - - - - - - - 0.785 - - tripeptidyl peptidase 2 [Source:HGNC Symbol;Acc:HGNC:12016]
43. CCDC61 ENSGALG00000006714 8066 0.784 - - - - - - - 0.784 - - coiled-coil domain containing 61 [Source:NCBI gene;Acc:424880]
44. SLC25A16 ENSGALG00000004065 2373 0.784 - - - - - - - 0.784 - - solute carrier family 25 member 16 [Source:HGNC Symbol;Acc:HGNC:10986]
45. PALD1 ENSGALG00000004465 3553 0.783 - - - - - - 0.783 - - - phosphatase domain containing, paladin 1 [Source:NCBI gene;Acc:373898]
46. MRPL18 ENSGALG00000011625 7855 0.782 - - - - - - - 0.782 - - mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:14477]
47. NDUFB3 ENSGALG00000008239 15511 0.782 - - - - - - - 0.782 - - NADH:ubiquinone oxidoreductase subunit B3 [Source:NCBI gene;Acc:424078]
48. BAG3 ENSGALG00000009433 6152 0.781 - - - - - - - 0.781 - - BCL2 associated athanogene 3 [Source:HGNC Symbol;Acc:HGNC:939]
49. MBD3 ENSGALG00000001101 37265 0.781 - - - - - - - 0.781 - - methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
50. IK ENSGALG00000037172 12100 0.781 - - - - - - 0.781 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
51. LZTFL1 ENSGALG00000033928 3493 0.78 - - - - - - 0.780 - - - leucine zipper transcription factor like 1 [Source:HGNC Symbol;Acc:HGNC:6741]
52. CCNK ENSGALG00000011138 6416 0.78 - - - - - - 0.780 - - - cyclin K [Source:NCBI gene;Acc:423446]
53. SMDT1 ENSGALG00000011897 9360 0.78 - - - - - - - 0.780 - - single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
54. ETF1 ENSGALG00000002262 14560 0.778 - - - - - - - 0.778 - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
55. CSK ENSGALG00000031270 11541 0.778 - - - - - - 0.778 - - - C-terminal Src kinase [Source:NCBI gene;Acc:396396]
56. EFHD1 ENSGALG00000001428 2831 0.778 - - - - - - - 0.778 - - EF-hand domain family member D1 [Source:NCBI gene;Acc:424741]
57. TRIM24 ENSGALG00000012823 2725 0.778 - - - - - - - 0.778 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
58. VGLL4 ENSGALG00000004937 3762 0.777 - - - - - - - 0.777 - - vestigial like family member 4 [Source:NCBI gene;Acc:415962]
59. BASP1 ENSGALG00000012952 19549 0.777 - - - - - - 0.777 - - - brain abundant membrane attached signal protein 1 [Source:NCBI gene;Acc:373905]
60. UPF3B ENSGALG00000008618 12350 0.777 - - - - - - 0.777 - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
61. TBL1XR1 ENSGALG00000039182 16983 0.777 - - - - - - - 0.777 - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
62. SEC22B ENSGALG00000039704 16080 0.777 - - - - - - 0.777 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
63. ERGIC2 ENSGALG00000007183 12870 0.777 - - - - - - - 0.777 - - ERGIC and golgi 2 [Source:NCBI gene;Acc:417697]
64. HNRNPLL ENSGALG00000008504 14719 0.774 - - - - - - 0.774 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
65. DTYMK ENSGALG00000006305 11736 0.774 - - - - - - 0.774 - - - deoxythymidylate kinase [Source:NCBI gene;Acc:770258]
66. HPCAL1 ENSGALG00000016443 6633 0.773 - - - - - - - 0.773 - - hippocalcin like 1 [Source:NCBI gene;Acc:396161]
67. LYPLA1 ENSGALG00000040421 14720 0.772 - - - - - - 0.772 - - - lysophospholipase I [Source:HGNC Symbol;Acc:HGNC:6737]
68. VPS29 ENSGALG00000004529 22509 0.772 - - - - - - 0.772 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
69. LEPREL4 LEPREL4 5609 0.772 - - - - - - - 0.772 - -
70. DPYD ENSGALG00000005509 4115 0.772 - - - - - - - 0.772 - - dihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]
71. ZFR ENSGALG00000003235 8466 0.772 - - - - - - 0.772 - - - zinc finger RNA binding protein, transcript variant X3
72. RIT1 ENSGALG00000014647 7174 0.772 - - - - - - 0.772 - - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
73. MEMO1 ENSGALG00000010624 6722 0.772 - - - - - - 0.772 - - - mediator of cell motility 1 [Source:NCBI gene;Acc:421483]
74. LATS2 4776 0.772 - - - - - - - 0.772 - - large tumor suppressor kinase 2
75. UBE2D1 ENSGALG00000021213 5876 0.771 - - - - - - - 0.771 - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
76. EDEM1 ENSGALG00000008320 3117 0.771 - - - - - - - 0.771 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]
77. ARPC1A ENSGALG00000004693 11583 0.771 - - - - - - 0.771 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
78. PDZD11 ENSGALG00000004198 11484 0.771 - - - - - - 0.771 - - - PDZ domain containing 11 [Source:NCBI gene;Acc:422153]
79. ENSGALG00000003150 ENSGALG00000003150 10001 0.77 - - - - - - - 0.770 - -
80. CHMP6 ENSGALG00000026428 18026 0.77 - - - - - - - 0.770 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
81. MOSPD1 ENSGALG00000006132 8503 0.77 - - - - - - 0.770 - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
82. ABHD17A ENSGALG00000041163 5578 0.769 - - - - - - 0.769 - - - abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:HGNC:28756]
83. FEN1 ENSGALG00000033781 16551 0.769 - - - - - - 0.769 - - - flap structure-specific endonuclease 1 [Source:NCBI gene;Acc:769677]
84. DMB2 ENSGALG00000038393 1257 0.769 - - - - - - - 0.769 - - major histocompatibility complex, class II, DM beta 2 [Source:NCBI gene;Acc:417051]
85. MED24 ENSGALG00000013506 5403 0.769 - - - - - - - 0.769 - - mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
86. SSU72 ENSGALG00000001489 7589 0.768 - - - - - - 0.768 - - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
87. MLLT10 ENSGALG00000007928 4022 0.767 - - - - - - - 0.767 - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]
88. PGAM5 ENSGALG00000002137 7700 0.767 - - - - - - - 0.767 - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
89. RDM1 ENSGALG00000000243 3388 0.767 - - - - - - - 0.767 - - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
90. PSMC5 ENSGALG00000000349 21346 0.767 - - - - - - 0.767 - - - proteasome 26S subunit, ATPase 5 [Source:NCBI gene;Acc:428274]
91. BCAP29 ENSGALG00000008009 8519 0.766 - - - - - - - 0.766 - - B cell receptor associated protein 29 [Source:NCBI gene;Acc:417702]
92. URM1 ENSGALG00000004971 17880 0.766 - - - - - - 0.766 - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
93. APLP2 ENSGALG00000001250 22253 0.766 - - - - - - 0.766 - - - amyloid beta precursor like protein 2 [Source:NCBI gene;Acc:419727]
94. SYNGR2 ENSGALG00000027902 6953 0.764 - - - - - - 0.764 - - - Gallus gallus synaptogyrin 2 (SYNGR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318453]
95. ECHS1 ENSGALG00000024271 9364 0.763 - - - - - - - 0.763 - - enoyl-CoA hydratase, short chain 1 [Source:NCBI gene;Acc:770828]
96. MRPL20 ENSGALG00000001542 28764 0.763 - - - - - - - 0.763 - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
97. ZYX ENSGALG00000014688 8686 0.763 - - - - - - 0.763 - - - zyxin [Source:NCBI gene;Acc:418300]
98. IDI1 ENSGALG00000006723 7761 0.762 - - - - - - 0.762 - - - isopentenyl-diphosphate delta isomerase 1, transcript variant X1
99. USP32 ENSGALG00000005350 1686 0.762 - - - - - - - 0.762 - - ubiquitin specific peptidase 32, transcript variant X2
100. PNRC2 ENSGALG00000004122 19228 0.762 - - - - - - 0.762 - - - proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]

There are 229 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA