Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL4A1

Gene Name Gene ID Reads Annotation
COL4A1 ENSGALG00000036798 12749 collagen type IV alpha 1 chain [Source:NCBI gene;Acc:395530]











Genes with expression patterns similar to COL4A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL4A1 ENSGALG00000036798 12749 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type IV alpha 1 chain [Source:NCBI gene;Acc:395530]
2. SPON1 ENSGALG00000038775 16503 2.191 - - - 0.739 - 0.700 - - 0.752 - spondin 1 [Source:NCBI gene;Acc:395657]
3. NARS ENSGALG00000040506 9506 1.64 - - - - 0.774 - 0.866 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
4. SIRT1 ENSGALG00000002761 9028 1.63 - - - - - - 0.850 0.780 - - sirtuin 1 [Source:NCBI gene;Acc:423646]
5. UTP3 ENSGALG00000011553 8814 1.629 - - - - - - 0.846 0.783 - - UTP3, small subunit processome component homolog (S. cerevisiae)
6. PSMG3 ENSGALG00000004203 11240 1.592 - - - - 0.739 - 0.853 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
7. TM9SF3 ENSGALG00000005534 15290 1.591 - - - - 0.761 - 0.830 - - - transmembrane 9 superfamily member 3
8. ENSGALG00000027854 ENSGALG00000027854 5007 1.58 - - - - 0.760 - 0.820 - - -
9. AIF1L ENSGALG00000029834 13866 1.576 - - 0.793 - - 0.783 - - - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
10. OGFOD1 6926 1.569 - - - - - - 0.804 0.765 - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
11. MCM4 ENSGALG00000012915 13151 1.542 - - - - - - 0.782 0.760 - - minichromosome maintenance complex component 4
12. VMP1 ENSGALG00000005160 12859 1.54 - - - - 0.760 - 0.780 - - - vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
13. PAX1 ENSGALG00000039040 3339 1.528 - - - - - 0.740 0.788 - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
14. HPGDS ENSGALG00000010402 343 1.522 - - - - - - - - 0.789 0.733 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
15. MINOS1 ENSGALG00000004039 37740 1.519 - - - - 0.725 - 0.794 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
16. OSF-2 OSF-2 10433 1.503 - - 0.717 - - 0.786 - - - -
17. CREPT CREPT 17142 1.478 - - - - - - 0.737 0.741 - -
18. ATRX ENSGALG00000007843 34172 0.886 - - - - - - 0.886 - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
19. TCF3 ENSGALG00000001093 15624 0.876 - - - - - - 0.876 - - - transcription factor 3 [Source:NCBI gene;Acc:395146]
20. MGST1 ENSGALG00000013098 17632 0.862 - - - - - - 0.862 - - - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
21. MAGOH 28688 0.86 - - - - - - 0.860 - - - mago homolog, exon junction complex core component
22. PTBP1 ENSGALG00000001962 66983 0.858 - - - - - - 0.858 - - - polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
23. NAA25 ENSGALG00000041821 12729 0.857 - - - - - - 0.857 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
24. DYNC1LI1 ENSGALG00000011491 11011 0.853 - - - - - - 0.853 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
25. ACAA2 ENSGALG00000031142 29220 0.852 - - - - - - 0.852 - - - acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
26. TP53BP2 ENSGALG00000042816 12368 0.851 - - - - - - 0.851 - - - tumor protein p53 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:12000]
27. XPA ENSGALG00000028998 8621 0.85 - - - - - - 0.850 - - - XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
28. LARP1 ENSGALG00000040109 14808 0.849 - - - - - - 0.849 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
29. TRAM1 ENSGALG00000041112 22876 0.849 - - - - - - 0.849 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
30. RCC2 ENSGALG00000031684 28067 0.846 - - - - - - 0.846 - - - regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:HGNC:30297]
31. POR ENSGALG00000002053 5223 0.846 - - - - - - 0.846 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
32. NCOA4 ENSGALG00000002066 10544 0.844 - - - - - - 0.844 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
33. ARNT2 ENSGALG00000006445 7050 0.842 - - - - - - 0.842 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
34. HDGFL3 ENSGALG00000006036 13576 0.84 - - - - - - 0.840 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
35. ADH5 ENSGALG00000012245 38217 0.84 - - - - - - 0.840 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
36. LAP3 ENSGALG00000006334 21076 0.838 - - - - - - 0.838 - - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
37. ARL6IP5 ENSGALG00000038904 12956 0.837 - - - - - - 0.837 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
38. SDF4 ENSGALG00000001872 6382 0.837 - - - - - - 0.837 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
39. DNAJC15 ENSGALG00000016965 9163 0.837 - - - - - - 0.837 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
40. PPP3R1 ENSGALG00000023648 3417 0.836 - - - - - - 0.836 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
41. SEMA4B ENSGALG00000008297 11202 0.836 - - - - - - 0.836 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
42. PSMC2 ENSGALG00000008236 25980 0.835 - - - - - - 0.835 - - - proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
43. CENPF ENSGALG00000009690 10429 0.833 - - - - - - 0.833 - - - centromere protein F [Source:NCBI gene;Acc:395357]
44. COPE ENSGALG00000003153 19444 0.832 - - - - - - 0.832 - - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
45. GCLM ENSGALG00000005782 15789 0.831 - - - - - - 0.831 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
46. RBM12B ENSGALG00000035129 4314 0.831 - - - - - - 0.831 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
47. SFT2D1 ENSGALG00000020005 10855 0.827 - - - - - - 0.827 - - - SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
48. MFGE8 ENSGALG00000006702 6976 0.825 - - - - - - 0.825 - - - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
49. CLPTM1L ENSGALG00000013187 9733 0.824 - - - - - - 0.824 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
50. KIF20A ENSGALG00000035030 10249 0.824 - - - - - - 0.824 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
51. ALDH4A1 ENSGALG00000042184 9432 0.823 - - - - - - 0.823 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
52. ATE1 ENSGALG00000009502 3751 0.822 - - - - - - 0.822 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
53. FUNDC1 ENSGALG00000028187 10511 0.822 - - - - - - 0.822 - - - FUN14 domain containing 1 [Source:NCBI gene;Acc:418558]
54. PTDSS1 ENSGALG00000030185 5515 0.821 - - - - - - 0.821 - - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
55. LATS2 4776 0.821 - - - - - - 0.821 - - - large tumor suppressor kinase 2
56. COX7A2L ENSGALG00000037996 13646 0.819 - - - - - - 0.819 - - - cytochrome c oxidase subunit 7A2 like [Source:NCBI gene;Acc:421392]
57. SOD2 ENSGALG00000011661 13178 0.819 - - - - - - 0.819 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
58. ARID4A ENSGALG00000012037 8554 0.819 - - - - - - 0.819 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
59. BPTF ENSGALG00000038222 7521 0.815 - - - - - - 0.815 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
60. E2F6 ENSGALG00000016454 4747 0.814 - - - - - - 0.814 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
61. XRN1 ENSGALG00000002706 4014 0.814 - - - - - - 0.814 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
62. ZMYND11 ENSGALG00000006599 5740 0.813 - - - - - - 0.813 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
63. MOB2 ENSGALG00000030499 3658 0.811 - - - - - - 0.811 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
64. GABPA ENSGALG00000015763 11567 0.81 - - - - - - 0.810 - - - GA binding protein transcription factor subunit alpha [Source:NCBI gene;Acc:418478]
65. FGD3 ENSGALG00000005237 4410 0.809 - - - - - - 0.809 - - - FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
66. NDUFA9 ENSGALG00000017282 14358 0.809 - - - - - - 0.809 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
67. YBX1 ENSGALG00000004848 20992 0.809 - - - - - - 0.809 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
68. ENSGALG00000007509 ENSGALG00000007509 18441 0.808 - - - - - - 0.808 - - -
69. RAB12 ENSGALG00000033608 14160 0.807 - - - - - - - 0.807 - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
70. UBR4 ENSGALG00000030563 5225 0.807 - - - - - - - 0.807 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
71. WBP11 ENSGALG00000011745 11182 0.806 - - - - - - 0.806 - - - WW domain binding protein 11, transcript variant X1
72. KCTD9 ENSGALG00000000275 3455 0.806 - - - - - - 0.806 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
73. AP2B1 ENSGALG00000042125 13229 0.805 - - - - - - 0.805 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
74. POLR3E ENSGALG00000007008 4010 0.804 - - - - - - 0.804 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
75. RPN1 ENSGALG00000005907 25315 0.803 - - - - - - - 0.803 - - ribophorin I [Source:HGNC Symbol;Acc:HGNC:10381]
76. METTL11A METTL11A 11876 0.803 - - - - - - 0.803 - - -
77. RNH1 ENSGALG00000006904 14542 0.803 - - - - - - - 0.803 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
78. CCND1 ENSGALG00000007555 6715 0.801 - - - - - - 0.801 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
79. EIF4G3 ENSGALG00000010084 5881 0.799 - - - - - - 0.799 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
80. ARPC4 ENSGALG00000006691 33311 0.799 - - - - - - 0.799 - - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
81. RILPL2 ENSGALG00000003321 5632 0.798 - - - - - - 0.798 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
82. BFAR ENSGALG00000003111 1778 0.798 - - - - - - 0.798 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
83. ID2 ENSGALG00000035016 22120 0.796 - - - - - - 0.796 - - - inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
84. SNRPF ENSGALG00000011409 23557 0.796 - - - - - - 0.796 - - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
85. H2AFY_1 ENSGALG00000040141 4895 0.796 - - - - - - 0.796 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
86. BHMT ENSGALG00000004518 4700 0.795 - - - - 0.795 - - - - - betaine--homocysteine S-methyltransferase
87. NEK6 ENSGALG00000001118 20333 0.795 - - - - 0.795 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
88. SF3A3 ENSGALG00000001540 9664 0.793 - - - - - - 0.793 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
89. TCP1 ENSGALG00000011637 73216 0.792 - - - - - - 0.792 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
90. NDUFS4 ENSGALG00000028026 25876 0.791 - - - - 0.791 - - - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
91. SRF ENSGALG00000032029 6983 0.791 - - - - - - - 0.791 - - serum response factor [Source:NCBI gene;Acc:396103]
92. CLCN3 ENSGALG00000009674 3704 0.79 - - - - - - 0.790 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
93. PLOD1 ENSGALG00000004531 8256 0.79 - - - - - - - 0.790 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 [Source:NCBI gene;Acc:419485]
94. AP3S1 ENSGALG00000002341 12388 0.79 - - - - - - 0.790 - - - adaptor related protein complex 3 sigma 1 subunit [Source:NCBI gene;Acc:427389]
95. NDUFB8 ENSGALG00000005704 5781 0.79 - - - - - - 0.790 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
96. PRMT3 ENSGALG00000003958 14160 0.79 - - - - - - 0.790 - - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
97. CCDC58 ENSGALG00000014413 9022 0.789 - - - - - - 0.789 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
98. RBBP6 ENSGALG00000006043 9708 0.789 - - - - - - 0.789 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
99. PMM2 ENSGALG00000007326 8260 0.789 - - - - - - 0.789 - - - phosphomannomutase 2 [Source:NCBI gene;Acc:427679]
100. ABCD3 ENSGALG00000005647 4844 0.789 - - - - - - 0.789 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]

There are 256 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA