Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL3A1

Gene Name Gene ID Reads Annotation
COL3A1 ENSGALG00000035584 39 collagen type III alpha 1 chain [Source:NCBI gene;Acc:396340]











Genes with expression patterns similar to COL3A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL3A1 ENSGALG00000035584 39 6 - - 1.000 1.000 1.000 - 1.000 1.000 - 1.000 collagen type III alpha 1 chain [Source:NCBI gene;Acc:396340]
2. MATN3 ENSGALG00000016478 10 1.692 - - - 0.876 - - 0.816 - - - matrilin 3 [Source:NCBI gene;Acc:395954]
3. RAP1GAP RAP1GAP 10 1.673 - - - 0.876 0.797 - - - - -
4. KCNG3 ENSGALG00000009919 243 1.475 - - - 0.714 - - - 0.761 - - potassium voltage-gated channel modifier subfamily G member 3 [Source:HGNC Symbol;Acc:HGNC:18306]
5. DOCK4 ENSGALG00000009480 61 1 - - - - - - 1.000 - - - dedicator of cytokinesis 4 [Source:HGNC Symbol;Acc:HGNC:19192]
6. CD300A CD300A 173 0.939 - - - - - - - - - 0.939
7. TTR ENSGALG00000015143 9764 0.935 - - - - - - - - - 0.935 transthyretin [Source:NCBI gene;Acc:396277]
8. SGCD ENSGALG00000003886 27 0.925 - - - - - - - - - 0.925 sarcoglycan delta [Source:HGNC Symbol;Acc:HGNC:10807]
9. ZDHHC8 ENSGALG00000002124 35 0.924 - - - - - - - - - 0.924 zinc finger DHHC-type containing 8 [Source:NCBI gene;Acc:416788]
10. RECQL5 ENSGALG00000002424 16 0.924 - - - - - - - - - 0.924 RecQ like helicase 5 [Source:NCBI gene;Acc:373891]
11. CYP2J22 ENSGALG00000011394 76 0.882 - - - - - - - 0.882 - - Gallus gallus cytochrome P450, family 2, subfamily J, polypeptide 22 (CYP2J22), mRNA. [Source:RefSeq mRNA;Acc:NM_001329480]
12. SLC25A29 ENSGALG00000011220 17 0.876 - - - 0.876 - - - - - - solute carrier family 25 member 29 [Source:HGNC Symbol;Acc:HGNC:20116]
13. FAM19A5 ENSGALG00000023584 2 0.876 - - - 0.876 - - - - - - family with sequence similarity 19 member A5, C-C motif chemokine like [Source:HGNC Symbol;Acc:HGNC:21592]
14. ACSBG1 ENSGALG00000003286 2 0.876 - - - 0.876 - - - - - - acyl-CoA synthetase bubblegum family member 1 [Source:HGNC Symbol;Acc:HGNC:29567]
15. SENP7 ENSGALG00000044642 48 0.876 - - - - - - - 0.876 - - SUMO specific peptidase 7 [Source:HGNC Symbol;Acc:HGNC:30402]
16. MILR1 ENSGALG00000046212 7 0.876 - - - 0.876 - - - - - - mast cell immunoglobulin-like receptor 1, transcript variant X3
17. TAS1R3 ENSGALG00000032317 2 0.876 - - - 0.876 - - - - - - taste 1 receptor member 3 [Source:HGNC Symbol;Acc:HGNC:15661]
18. BTK ENSGALG00000004958 272 0.875 - - - - - - - 0.875 - - Bruton tyrosine kinase [Source:NCBI gene;Acc:374075]
19. ADCYAP1R1 ENSGALG00000005223 114 0.875 - - - - - - 0.875 - - - ADCYAP receptor type I [Source:NCBI gene;Acc:420386]
20. MFSD7 209 0.873 - - - - - - - 0.873 - - major facilitator superfamily domain containing 7, transcript variant X2
21. ACOT6 ENSGALG00000009292 38 0.871 - - - - - - - - - 0.871 acyl-CoA thioesterase 6 [Source:HGNC Symbol;Acc:HGNC:33159]
22. TK1 ENSGALG00000007191 277 0.869 - - - - - - - 0.869 - - thymidine kinase 1 [Source:NCBI gene;Acc:395719]
23. CHIC2 ENSGALG00000013931 21 0.863 - - - - - - - - - 0.863 cysteine rich hydrophobic domain 2 [Source:HGNC Symbol;Acc:HGNC:1935]
24. ENSGALG00000027602 ENSGALG00000027602 20 0.858 - - - 0.858 - - - - - -
25. C3AR1 ENSGALG00000013218 32 0.856 - - - 0.856 - - - - - - complement C3a receptor 1 [Source:NCBI gene;Acc:418198]
26. PRPF19 ENSGALG00000040048 168 0.851 - - - - - - - - - 0.851 pre-mRNA processing factor 19 [Source:NCBI gene;Acc:430767]
27. DHX58 ENSGALG00000023821 15 0.84 - - - - - - - 0.840 - - Gallus gallus DExH-box helicase 58 (DHX58), mRNA. [Source:RefSeq mRNA;Acc:NM_001318408]
28. CPB1 ENSGALG00000006834 25 0.84 - - - - - - - 0.840 - - carboxypeptidase B1 [Source:NCBI gene;Acc:424888]
29. UBE3C ENSGALG00000006461 57 0.84 - - - - - - - 0.840 - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
30. TAGAP ENSGALG00000013747 34 0.84 - - - - - - - 0.840 - - T cell activation RhoGTPase activating protein [Source:HGNC Symbol;Acc:HGNC:15669]
31. KLF11 ENSGALG00000016440 65 0.84 - - - - - - - 0.840 - - Kruppel like factor 11 [Source:NCBI gene;Acc:421934]
32. ENSGALG00000018499 ENSGALG00000018499 100 0.839 - - - - - - - 0.839 - -
33. PIGF ENSGALG00000020057 201 0.836 - - - - - - - 0.836 - - phosphatidylinositol glycan anchor biosynthesis class F [Source:HGNC Symbol;Acc:HGNC:8962]
34. gga-mir-454 ENSGALG00000033526 22 0.834 - - - - - - - 0.834 - - gga-mir-454 [Source:miRBase;Acc:MI0006984]
35. IRF-4 IRF-4 19 0.833 - - - - - - - 0.833 - -
36. SMIM14 ENSGALG00000014321 166 0.829 - - - - - - - - - 0.829 small integral membrane protein 14 [Source:NCBI gene;Acc:422793]
37. NTSR1 ENSGALG00000005524 2 0.827 - - - - - - - - - 0.827 neurotensin receptor 1 [Source:NCBI gene;Acc:428149]
38. MDGA1 ENSGALG00000010145 13 0.827 - - - - - - - - - 0.827 MAM domain containing glycosylphosphatidylinositol anchor 1 [Source:NCBI gene;Acc:421431]
39. SH2D5 ENSGALG00000044997 2 0.827 - - - - - - - - - 0.827 SH2 domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28819]
40. SLC26A7 ENSGALG00000033638 14 0.827 - - - - - - - - - 0.827 solute carrier family 26 member 7 [Source:HGNC Symbol;Acc:HGNC:14467]
41. ACA64 ACA64 62 0.827 - - - - - - - - - 0.827
42. KK34 ENSGALG00000037851 21 0.827 - - - - - - - - - 0.827 interleukin-like [Source:NCBI gene;Acc:407087]
43. ZCCHC7 ENSGALG00000028675 3 0.827 - - - - - - - - - 0.827 zinc finger CCHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:26209]
44. FAM83G ENSGALG00000005087 3 0.827 - - - - - - - - - 0.827 family with sequence similarity 83 member G [Source:HGNC Symbol;Acc:HGNC:32554]
45. DOK2 8 0.827 - - - - - - - - - 0.827 docking protein 2, transcript variant X2
46. PSTPIP2 ENSGALG00000040136 37 0.825 - - - - - - - 0.825 - - proline-serine-threonine phosphatase interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9581]
47. FMR1 ENSGALG00000009177 561 0.823 - - - - - - - 0.823 - - fragile X mental retardation 1 [Source:HGNC Symbol;Acc:HGNC:3775]
48. ASL1 ENSGALG00000002558 78 0.823 - - - - - - - 0.823 - - argininosuccinate lyase 1 [Source:NCBI gene;Acc:396498]
49. CHST8 ENSGALG00000004903 16 0.822 - - - 0.822 - - - - - - carbohydrate sulfotransferase 8 [Source:HGNC Symbol;Acc:HGNC:15993]
50. SLC35C1 ENSGALG00000008438 486 0.821 - - - - - - - 0.821 - - solute carrier family 35 member C1 [Source:NCBI gene;Acc:423203]
51. TOR2A ENSGALG00000026424 1182 0.82 - - - - - - - 0.820 - - torsin family 2 member A [Source:HGNC Symbol;Acc:HGNC:11996]
52. OXCT1 ENSGALG00000014846 17 0.82 - - - - - - - - - 0.820 3-oxoacid CoA-transferase 1 [Source:NCBI gene;Acc:427190]
53. MCM8 ENSGALG00000009195 9 0.818 - - - - - - - - - 0.818 minichromosome maintenance 8 homologous recombination repair factor [Source:NCBI gene;Acc:421314]
54. HMGXB3 ENSGALG00000005770 119 0.818 - - - - - - - 0.818 - - HMG-box containing 3 [Source:HGNC Symbol;Acc:HGNC:28982]
55. SH3GL1 ENSGALG00000001121 159 0.817 - - - - - - - 0.817 - - SH3 domain containing GRB2 like 1, endophilin A2 [Source:NCBI gene;Acc:395202]
56. TAT ENSGALG00000000893 11 0.816 - - - - - - 0.816 - - - tyrosine aminotransferase [Source:HGNC Symbol;Acc:HGNC:11573]
57. ENSGALG00000001478 ENSGALG00000001478 23 0.816 - - - - - - 0.816 - - -
58. BRPF3 8 0.816 - - - - - - 0.816 - - - bromodomain and PHD finger containing, 3, transcript variant X2
59. CACNG3 ENSGALG00000038087 12 0.816 - - - - - - 0.816 - - - calcium voltage-gated channel auxiliary subunit gamma 3 [Source:NCBI gene;Acc:395378]
60. PIK3CG ENSGALG00000008081 5 0.816 - - - - - - 0.816 - - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:NCBI gene;Acc:417706]
61. TMCC1 ENSGALG00000008487 65 0.816 - - - - - - 0.816 - - - transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
62. PACSIN1 ENSGALG00000002802 6 0.816 - - - - - - 0.816 - - - protein kinase C and casein kinase substrate in neurons 1 [Source:HGNC Symbol;Acc:HGNC:8570]
63. CTNNAL1 ENSGALG00000013207 44 0.816 - - - - - - 0.816 - - - catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]
64. MSL2 ENSGALG00000039294 55 0.816 - - - - - - 0.816 - - - MSL complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25544]
65. CCDC148 ENSGALG00000012555 22 0.816 - - - - - - 0.816 - - - coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
66. CUBN ENSGALG00000008704 21 0.816 - - - - - - 0.816 - - - cubilin [Source:HGNC Symbol;Acc:HGNC:2548]
67. SELP 28 0.816 - - - - - - 0.816 - - - selectin P, transcript variant X9
68. VEPH1 ENSGALG00000009682 51 0.816 - - - - - - 0.816 - - - ventricular zone expressed PH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25735]
69. ENSGALG00000019221 ENSGALG00000019221 9 0.816 - - - - - - 0.816 - - -
70. SMTNL1 12 0.816 - - - - - - 0.816 - - - smoothelin like 1
71. PLCL1 ENSGALG00000008113 23 0.816 - - - - - - 0.816 - - - phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]
72. MCMBP ENSGALG00000009455 90 0.816 - - - - - - 0.816 - - - minichromosome maintenance complex binding protein [Source:NCBI gene;Acc:423933]
73. ENSGALG00000001138 ENSGALG00000001138 21 0.816 - - - - - - 0.816 - - -
74. FAM240B ENSGALG00000021163 6 0.816 - - - - - - 0.816 - - - family with sequence similarity 240 member B [Source:NCBI gene;Acc:427470]
75. gga-mir-6558 ENSGALG00000032123 13 0.816 - - - - - - 0.816 - - - gga-mir-6558 [Source:miRBase;Acc:MI0022376]
76. CFAP74 ENSGALG00000001288 54 0.816 - - - - - - 0.816 - - - cilia and flagella associated protein 74 [Source:HGNC Symbol;Acc:HGNC:29368]
77. SYPL1 ENSGALG00000029006 126 0.816 - - - - - - 0.816 - - - synaptophysin like 1 [Source:NCBI gene;Acc:417708]
78. CEP85 ENSGALG00000042624 59 0.816 - - - - - - 0.816 - - - centrosomal protein 85 [Source:HGNC Symbol;Acc:HGNC:25309]
79. CD72 ENSGALG00000005194 1 0.816 - - - - - - 0.816 - - - CD72 molecule [Source:NCBI gene;Acc:395923]
80. ENSGALG00000028038 ENSGALG00000028038 9 0.816 - - - - - - 0.816 - - -
81. CLDN1 ENSGALG00000026862 28 0.816 - - - - - - 0.816 - - - claudin 1 [Source:NCBI gene;Acc:424910]
82. MPPED2 ENSGALG00000012136 7 0.816 - - - - - - 0.816 - - - metallophosphoesterase domain containing 2 [Source:NCBI gene;Acc:421604]
83. VSNL1 ENSGALG00000016464 19 0.816 - - - - - - 0.816 - - - visinin like 1 [Source:NCBI gene;Acc:396189]
84. DMP1 ENSGALG00000010927 5 0.816 - - - - - - 0.816 - - - matrix extracellular phosphoglycoprotein [Source:NCBI gene;Acc:395256]
85. SRD5A2 ENSGALG00000010625 23 0.816 - - - - - - 0.816 - - - steroid 5 alpha-reductase 2 [Source:HGNC Symbol;Acc:HGNC:11285]
86. ZDHHC18 ENSGALG00000034910 16 0.816 - - - - - - 0.816 - - - zinc finger, DHHC-type containing 18 [Source:NCBI gene;Acc:419575]
87. ENSGALG00000000346 ENSGALG00000000346 130 0.816 - - - - - - 0.816 - - -
88. SBSPONL ENSGALG00000005862 129 0.816 - - - - - - 0.816 - - - somatomedin B and thrombospondin type 1 domain containing like [Source:NCBI gene;Acc:416923]
89. PCID2 ENSGALG00000016831 57 0.816 - - - - - - 0.816 - - - PCI domain containing 2 [Source:NCBI gene;Acc:418745]
90. C21orf62 ENSGALG00000040059 5 0.816 - - - - - - 0.816 - - - chromosome 21 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:1305]
91. TGIF2 ENSGALG00000024081 21 0.816 - - - - - - 0.816 - - - TGFB induced factor homeobox 2 [Source:HGNC Symbol;Acc:HGNC:15764]
92. CYP2W1 ENSGALG00000021238, ENSGALG00000045037 2 0.816 - - - - - - 0.816 - - - cytochrome P450 family 2 subfamily W member 1, transcript variant X4
93. CTNND1 ENSGALG00000007330 53 0.816 - - - - - - 0.816 - - - catenin delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
94. CYP17A1 ENSGALG00000008121 227 0.816 - - - - - - 0.816 - - - cytochrome P450 family 17 subfamily A member 1 [Source:NCBI gene;Acc:425056]
95. RGR ENSGALG00000002299 17 0.816 - - - - - - 0.816 - - - retinal G protein coupled receptor [Source:NCBI gene;Acc:423619]
96. ENSGALG00000019156 ENSGALG00000019156 1 0.816 - - - - - - 0.816 - - -
97. TM6SF2 ENSGALG00000029015 109 0.816 - - - - - - 0.816 - - - transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
98. VSX2 ENSGALG00000033517 30 0.816 - - - - - - 0.816 - - - visual system homeobox 2 [Source:NCBI gene;Acc:395536]
99. FZD1 ENSGALG00000009064 76 0.816 - - - - - - 0.816 - - - frizzled class receptor 1 [Source:NCBI gene;Acc:374062]
100. ENSGALG00000019943 ENSGALG00000019943 6 0.815 - - - - - - - - - 0.815

There are 172 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA