Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL1A2

Gene Name Gene ID Reads Annotation
COL1A2 ENSGALG00000009641 46236 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]











Genes with expression patterns similar to COL1A2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL1A2 ENSGALG00000009641 46236 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
2. SPARC ENSGALG00000004184 36410 3.179 - 0.732 0.796 0.805 0.846 - - - - - secreted protein acidic and cysteine rich [Source:NCBI gene;Acc:386571]
3. S100A11 ENSGALG00000036711 23454 2.233 - - 0.779 0.733 0.721 - - - - - S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
4. BOD1L1 ENSGALG00000026470 9250 1.576 - - 0.847 - - - - 0.729 - - biorientation of chromosomes in cell division 1 like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
5. PDGFRA ENSGALG00000013929 12501 1.519 - - - - 0.722 - - 0.797 - - platelet-derived growth factor receptor, alpha polypeptide [Source:NCBI gene;Acc:395509]
6. MYLK ENSGALG00000011708 10434 1.449 - - - - 0.706 - - 0.743 - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
7. FN1 ENSGALG00000003578 37024 1.42 - - - 0.710 0.710 - - - - - fibronectin 1 [Source:NCBI gene;Acc:396133]
8. MAP3K7 ENSGALG00000015596 15164 0.884 - - - - - - - 0.884 - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
9. LUM ENSGALG00000011271 44020 0.875 - - - - 0.875 - - - - - lumican [Source:NCBI gene;Acc:417891]
10. TGFBI ENSGALG00000029429 2306 0.82 - - - - 0.820 - - - - - transforming growth factor beta induced [Source:NCBI gene;Acc:395897]
11. C5ORF13 C5ORF13 50177 0.818 - - - - - - - 0.818 - -
12. TCOF1 ENSGALG00000005535 24554 0.816 - - - - - - 0.816 - - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
13. TMEM9B ENSGALG00000005908 14074 0.814 - - - - - - - 0.814 - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
14. PSMB4 ENSGALG00000000905 46735 0.797 - - - - - - - 0.797 - - proteasome subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:9541]
15. MYH10 ENSGALG00000001183 26889 0.789 - - 0.789 - - - - - - - myosin, heavy chain 10, non-muscle [Source:NCBI gene;Acc:396465]
16. LAMB1 ENSGALG00000007905 7737 0.785 - - 0.785 - - - - - - - laminin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
17. ADD3 ENSGALG00000008542 13814 0.783 - - 0.783 - - - - - - - adducin 3 (gamma) [Source:NCBI gene;Acc:373892]
18. PTDSS1 ENSGALG00000030185 5515 0.783 - - - - - - - 0.783 - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
19. FXYD6 ENSGALG00000025937 4073 0.782 - 0.782 - - - - - - - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
20. TIMM10 ENSGALG00000004845 31395 0.781 - - - - - - - 0.781 - - translocase of inner mitochondrial membrane 10 [Source:NCBI gene;Acc:425202]
21. PDLIM7 ENSGALG00000026159 4700 0.777 - - - - - - - - 0.777 - PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]
22. ETFDH ENSGALG00000009442 7671 0.776 - - - - - - - 0.776 - - electron transfer flavoprotein dehydrogenase [Source:NCBI gene;Acc:428724]
23. SF3B1 ENSGALG00000008038 30161 0.766 - - - - - - 0.766 - - - splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
24. RWDD3 ENSGALG00000038421 10909 0.765 - - - - - - - 0.765 - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
25. APP ENSGALG00000015770 9438 0.763 - - 0.763 - - - - - - - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
26. BOC ENSGALG00000015152 4868 0.761 - - - - - - - - 0.761 - BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
27. EPRS ENSGALG00000009598 26412 0.76 - - - - - - - 0.760 - - glutamyl-prolyl-tRNA synthetase [Source:NCBI gene;Acc:421348]
28. CDH11 ENSGALG00000039985 18212 0.759 - - - - 0.759 - - - - - cadherin 11 [Source:NCBI gene;Acc:415797]
29. CLMP ENSGALG00000006507 8079 0.759 - - - - 0.759 - - - - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
30. ACTN1 ENSGALG00000042458 10477 0.758 - - - - 0.758 - - - - - actinin, alpha 1 [Source:NCBI gene;Acc:373918]
31. COL12A1 ENSGALG00000015908 1300 0.758 - - - - 0.758 - - - - - collagen type XII alpha 1 chain [Source:NCBI gene;Acc:395875]
32. ENSGALG00000014852 ENSGALG00000014852 15288 0.758 - - 0.758 - - - - - - -
33. TAGLN ENSGALG00000011902 12030 0.757 - - - - 0.757 - - - - - transgelin [Source:NCBI gene;Acc:396490]
34. SOX10 ENSGALG00000012290 3942 0.756 - 0.756 - - - - - - - - SRY-box 10 [Source:NCBI gene;Acc:395573]
35. TSG101 ENSGALG00000006312 8289 0.755 - - - - - - - 0.755 - - tumor susceptibility gene 101 [Source:NCBI gene;Acc:423082]
36. MMP2 ENSGALG00000003580 13120 0.754 - - - - 0.754 - - - - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
37. COL6A3 ENSGALG00000003923 3400 0.753 - - - - 0.753 - - - - - collagen type VI alpha 3 chain [Source:NCBI gene;Acc:396548]
38. GPR37 ENSGALG00000040954 3566 0.752 - - - - 0.752 - - - - - G protein-coupled receptor 37 [Source:NCBI gene;Acc:417748]
39. RILPL2 ENSGALG00000003321 5632 0.752 - - - - - - - 0.752 - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
40. HNRNPAB ENSGALG00000014381 41009 0.75 - - - - - - - 0.750 - - heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
41. MEIS2 ENSGALG00000039118 81591 0.749 - - - - - - - - 0.749 - Meis homeobox 2 [Source:NCBI gene;Acc:395588]
42. SPRED2 ENSGALG00000008778 1475 0.747 - - 0.747 - - - - - - - sprouty related EVH1 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:17722]
43. ARF6 ENSGALG00000026944 22014 0.745 - - - - - - - 0.745 - - ADP ribosylation factor 6 [Source:NCBI gene;Acc:428927]
44. ACTG2 ENSGALG00000041634 4529 0.744 - - - - 0.744 - - - - - actin, gamma 2, smooth muscle, enteric [Source:NCBI gene;Acc:396084]
45. NEK6 ENSGALG00000001118 20333 0.743 - - - - - - - 0.743 - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
46. MDK ENSGALG00000008367 316136 0.743 - - - - - - - - 0.743 - midkine [Source:NCBI gene;Acc:423196]
47. ANGPTL2 ENSGALG00000000927 2580 0.742 - - - - - - - 0.742 - - angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
48. OLFML3 ENSGALG00000001956 28633 0.742 - - - - 0.742 - - - - - olfactomedin like 3 [Source:NCBI gene;Acc:419882]
49. GLMN ENSGALG00000005959 2049 0.737 - - - - - - - 0.737 - - glomulin, FKBP associated protein [Source:HGNC Symbol;Acc:HGNC:14373]
50. VPS29 ENSGALG00000004529 22509 0.736 - - - - - - - 0.736 - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
51. SRSF11 ENSGALG00000011305 10435 0.736 - - 0.736 - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
52. ST3GAL1 ENSGALG00000037773 2014 0.736 - - 0.736 - - - - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [Source:NCBI gene;Acc:396140]
53. ZFAND5 ENSGALG00000015144 9053 0.736 - - 0.736 - - - - - - - zinc finger AN1-type containing 5 [Source:NCBI gene;Acc:427254]
54. TPMT ENSGALG00000012687 9537 0.735 - - - - - - - 0.735 - - thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:HGNC:12014]
55. TNFRSF1A ENSGALG00000039461 1569 0.735 - - - - - - - 0.735 - - TNF receptor superfamily member 1A [Source:NCBI gene;Acc:418325]
56. DGCR2 ENSGALG00000005891 8405 0.735 - - - - - - - 0.735 - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
57. FZD2 ENSGALG00000030847 3286 0.735 - - - - - - - - 0.735 - frizzled class receptor 2 [Source:NCBI gene;Acc:374061]
58. PGAP2 ENSGALG00000027762 2583 0.734 - - - - - - - 0.734 - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
59. PON2 ENSGALG00000009689 1416 0.732 - - 0.732 - - - - - - - paraoxonase 2 [Source:NCBI gene;Acc:395830]
60. PHIP ENSGALG00000015889 2348 0.731 - - 0.731 - - - - - - - pleckstrin homology domain interacting protein [Source:HGNC Symbol;Acc:HGNC:15673]
61. NCAPD2 ENSGALG00000039448 8658 0.731 - - - - - - - 0.731 - - non-SMC condensin I complex subunit D2 [Source:NCBI gene;Acc:418275]
62. FKBP9 ENSGALG00000037669 12079 0.729 - - - - 0.729 - - - - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
63. ATP2B4 ENSGALG00000003601 3746 0.728 - - 0.728 - - - - - - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
64. CYFIP1 ENSGALG00000016736 6701 0.728 - - - - - - - 0.728 - - cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13759]
65. ENSGALG00000020092 ENSGALG00000020092 3067 0.728 - - 0.728 - - - - - - -
66. DHRS7 ENSGALG00000011921 4470 0.728 - - - - - - - - 0.728 - dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524]
67. MCM2 ENSGALG00000006037 13458 0.727 - - - - - - - 0.727 - - minichromosome maintenance complex component 2 [Source:NCBI gene;Acc:416027]
68. EIF4E2 ENSGALG00000007919 8163 0.726 - - - - - - - 0.726 - - eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:HGNC:3293]
69. LSP1 ENSGALG00000006583 2643 0.724 - - 0.724 - - - - - - - lymphocyte specific protein 1 [Source:NCBI gene;Acc:374254]
70. URI1 ENSGALG00000004506 6024 0.724 - - - - - - - 0.724 - - URI1, prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:13236]
71. RALB ENSGALG00000026493 14590 0.723 - - - - - - - 0.723 - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
72. CSRP2 ENSGALG00000029921 6629 0.723 - 0.723 - - - - - - - - cysteine and glycine rich protein 2 [Source:NCBI gene;Acc:396128]
73. HDGFL3 ENSGALG00000006036 13576 0.722 - - 0.722 - - - - - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
74. P4HA3 ENSGALG00000042030 826 0.722 - 0.722 - - - - - - - - prolyl 4-hydroxylase subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:30135]
75. PSTK 2511 0.721 - - - - - - - 0.721 - - phosphoseryl-tRNA kinase, transcript variant X1
76. NT5DC2 ENSGALG00000035596 27633 0.72 - - - - - - - - 0.720 - 5'-nucleotidase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25717]
77. ING4 ENSGALG00000014457 5561 0.72 - - - - - - - 0.720 - - inhibitor of growth family member 4 [Source:NCBI gene;Acc:418281]
78. BAG3 ENSGALG00000009433 6152 0.72 - - - - - 0.720 - - - - BCL2 associated athanogene 3 [Source:HGNC Symbol;Acc:HGNC:939]
79. CDH1 ENSGALG00000000608 6156 0.72 - - - - - - - 0.720 - - cadherin 3 [Source:NCBI gene;Acc:414845]
80. PLOD2 ENSGALG00000006783 22789 0.719 - - - - 0.719 - - - - - procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
81. GATA6 ENSGALG00000014976 3256 0.717 - - - - - - - - 0.717 - GATA binding protein 6 [Source:NCBI gene;Acc:396390]
82. CDC42SE2 ENSGALG00000027258 4725 0.717 - - - - - - - 0.717 - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
83. SSU72 ENSGALG00000001489 7589 0.717 - - - - - - - 0.717 - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
84. HADHA ENSGALG00000016536 3791 0.717 - - - - - - - 0.717 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:NCBI gene;Acc:395929]
85. SLC4A1AP ENSGALG00000010047 3171 0.716 - - - - - - - 0.716 - - solute carrier family 4 member 1 adaptor protein [Source:HGNC Symbol;Acc:HGNC:13813]
86. ALG6 ENSGALG00000010991 3258 0.715 - - - - - - - 0.715 - - ALG6, alpha-1,3-glucosyltransferase [Source:NCBI gene;Acc:395078]
87. PRRX1 ENSGALG00000003324 4859 0.715 - - - - 0.715 - - - - - paired related homeobox 1 [Source:NCBI gene;Acc:373941]
88. NME3 ENSGALG00000027635 5974 0.714 - - - - - - - 0.714 - - NME/NM23 nucleoside diphosphate kinase 3 [Source:NCBI gene;Acc:416399]
89. C1H11ORF67 C1H11ORF67 2089 0.714 - - - - - - - 0.714 - -
90. IMPA1 ENSGALG00000034487 3691 0.713 - - - - - - - 0.713 - - inositol monophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:6050]
91. PPP4R2 ENSGALG00000007810 15127 0.712 - - - - - - - 0.712 - - protein phosphatase 4 regulatory subunit 2 [Source:NCBI gene;Acc:416098]
92. UBE2L3 ENSGALG00000036739 21401 0.712 - - - - - - - 0.712 - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
93. SIK1 ENSGALG00000041988 2179 0.712 - - - - - - - 0.712 - - salt inducible kinase 1 [Source:NCBI gene;Acc:395417]
94. SVEP1 ENSGALG00000015721 4026 0.712 - - - - 0.712 - - - - - sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
95. EVC ENSGALG00000015037 1963 0.711 - - - - - - - 0.711 - - EvC ciliary complex subunit 1 [Source:NCBI gene;Acc:422851]
96. DSP ENSGALG00000012790 17884 0.71 - - 0.710 - - - - - - - desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
97. HAPLN1 ENSGALG00000015627 14942 0.71 - - - - 0.710 - - - - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
98. ALX-4 ALX-4 2351 0.708 - - - - 0.708 - - - - -
99. ASPM ENSGALG00000032398 12784 0.708 - - 0.708 - - - - - - - abnormal spindle microtubule assembly [Source:HGNC Symbol;Acc:HGNC:19048]
100. FRZB ENSGALG00000002763 14833 0.708 - - - - 0.708 - - - - - frizzled related protein [Source:NCBI gene;Acc:395545]

There are 13 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA