Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL11A1

Gene Name Gene ID Reads Annotation
COL11A1 ENSGALG00000005180 244 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]











Genes with expression patterns similar to COL11A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL11A1 ENSGALG00000005180 244 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
2. T ENSGALG00000011489 2619 2.473 - - - 0.889 - - - - 0.786 0.798 T brachyury transcription factor [Source:NCBI gene;Acc:395782]
3. OSF-2 OSF-2 10433 2.376 - - - 0.701 - - - - 0.781 0.894
4. COL8A1 ENSGALG00000015253 2505 2.352 - - - 0.863 - - - - 0.745 0.744 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
5. SPON2 ENSGALG00000038433 1240 2.2 - - - 0.748 - - - - 0.733 0.719 spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
6. ZNF770 ENSGALG00000009817 27 1.838 - - - - - - 0.915 0.923 - - zinc finger protein 770 [Source:HGNC Symbol;Acc:HGNC:26061]
7. SAMD3 ENSGALG00000032409 459 1.833 - - - 0.938 - - - - - 0.895 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
8. SAMD15 ENSGALG00000010457 69 1.774 - - - - - 0.940 - - - 0.834 sterile alpha motif domain containing 15
9. ENSGALG00000019672 ENSGALG00000019672 18 1.77 - - - - - - 0.915 0.855 - -
10. SLC22A15 ENSGALG00000015016 12 1.755 - - - - - - 0.798 - - 0.957 solute carrier family 22 member 15 [Source:HGNC Symbol;Acc:HGNC:20301]
11. RAB38 ENSGALG00000028018 1046 1.733 - - - 0.917 - - - - - 0.816 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
12. ZSWIM6 ENSGALG00000014734 7 1.726 - - - 0.840 - - - - - 0.886 zinc finger SWIM-type containing 6, transcript variant X2
13. SLC29A4 ENSGALG00000010497 43 1.663 - - - 0.793 - - - - - 0.870 solute carrier family 29 member 4 [Source:HGNC Symbol;Acc:HGNC:23097]
14. TXNRD1 ENSGALG00000035345 4784 1.654 - - - 0.885 - - - - - 0.769 Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
15. HPGDS ENSGALG00000010402 343 1.65 - - - 0.872 - - - - - 0.778 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
16. IYD ENSGALG00000012392 315 1.641 - - - - - - - - 0.775 0.866 iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
17. GPRC5B ENSGALG00000002028 28 1.626 - - - - - - - 0.855 - 0.771 G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
18. PTPRD ENSGALG00000015058 37 1.621 - - - 0.795 - - - - - 0.826 protein tyrosine phosphatase, receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]
19. LRRTM1 ENSGALG00000015967 85 1.616 - - - 0.889 - - - - - 0.727 leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
20. C9H2ORF82 ENSGALG00000040264 4201 1.562 - - - 0.860 - - - - 0.702 - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
21. TIMP3 ENSGALG00000028627 8706 1.551 - - - 0.793 - - - - 0.758 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
22. THSD4 ENSGALG00000004087 12 1.546 - - - 0.840 - - - - - 0.706 thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
23. OCA2 ENSGALG00000016740 421 1.542 - - - 0.779 - - - - 0.763 - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
24. TMEM230 ENSGALG00000036876 55 1.464 - - - - - - - 0.714 - 0.750 transmembrane protein 230 [Source:NCBI gene;Acc:419518]
25. SCARA3 ENSGALG00000026651 2559 1.457 - - - 0.722 - - - - 0.735 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
26. EMILIN3 ENSGALG00000030012 6200 1.445 - - - 0.735 - - - - 0.710 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
27. PDLIM3 ENSGALG00000013414 52 1.444 - - - - - - 0.711 - - 0.733 PDZ and LIM domain 3 [Source:NCBI gene;Acc:414873]
28. ATXN1 ENSGALG00000012709 2 0.957 - - - - - - - - - 0.957 ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
29. gga-mir-1556 ENSGALG00000025512 2 0.957 - - - - - - - - - 0.957 gga-mir-1556 [Source:miRBase;Acc:MI0007281]
30. FOLH1 ENSGALG00000017234 9 0.957 - - - - - - - - - 0.957 folate hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3788]
31. CNTNAP5 ENSGALG00000011577 2 0.957 - - - - - - - - - 0.957 contactin associated protein like 5 [Source:NCBI gene;Acc:424231]
32. ENSGALG00000023012 ENSGALG00000023012 2 0.957 - - - - - - - - - 0.957
33. ENSGALG00000021386 ENSGALG00000021386 29 0.957 - - - - - - - - - 0.957
34. ENSGALG00000010883 ENSGALG00000010883 10 0.957 - - - - - - - - - 0.957
35. SLC26A5 ENSGALG00000008222 3 0.957 - - - - - - - - - 0.957 solute carrier family 26 member 5 [Source:NCBI gene;Acc:417715]
36. PGR ENSGALG00000017195 2 0.957 - - - - - - - - - 0.957 progesterone receptor [Source:NCBI gene;Acc:396198]
37. UGT2A1 ENSGALG00000011805 2 0.957 - - - - - - - - - 0.957 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus, transcript variant X3
38. ENSGALG00000013409 ENSGALG00000013409 4 0.957 - - - - - - - - - 0.957
39. ENSGALG00000028196 ENSGALG00000028196 8 0.953 - - - - - - 0.953 - - -
40. KHDRBS3 ENSGALG00000031519 501 0.953 - - - - - - 0.953 - - - KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117]
41. A1CF ENSGALG00000003765 36 0.953 - - - - - - 0.953 - - - APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
42. PANK3 ENSGALG00000001895 11 0.953 - - - - - - 0.953 - - - pantothenate kinase 3 [Source:HGNC Symbol;Acc:HGNC:19365]
43. ENSGALG00000008822 ENSGALG00000008822 221 0.952 - - - - - - - - - 0.952
44. PALM2 ENSGALG00000015655 20 0.942 - - - - - - - - - 0.942 paralemmin 2 [Source:HGNC Symbol;Acc:HGNC:15845]
45. PLXND1 ENSGALG00000008473 21 0.942 - - - - - - - - - 0.942 plexin D1 [Source:HGNC Symbol;Acc:HGNC:9107]
46. DPY19L4 ENSGALG00000039222 30 0.94 - - - - - - - - - 0.940 dpy-19 like 4 [Source:HGNC Symbol;Acc:HGNC:27829]
47. ARHGAP39 ENSGALG00000001536 15 0.934 - - - - - - - - - 0.934 Rho GTPase activating protein 39, transcript variant X2
48. ENSGALG00000028367 ENSGALG00000028367 102 0.934 - - - - - - - - - 0.934
49. LY75 ENSGALG00000011153 76 0.933 - - - - - - - 0.933 - - lymphocyte antigen 75 [Source:NCBI gene;Acc:424192]
50. RAB3GAP2 ENSGALG00000009503 36 0.927 - - - - - - - - - 0.927 RAB3 GTPase activating non-catalytic protein subunit 2 [Source:NCBI gene;Acc:421343]
51. IRF8 ENSGALG00000005757 5 0.919 - - - - - - - - - 0.919 interferon regulatory factor 8 [Source:NCBI gene;Acc:396385]
52. ENSGALG00000027568 ENSGALG00000027568 3 0.919 - - - - - - - - - 0.919
53. ZPBP2 ENSGALG00000013484 14 0.915 - - - - - - 0.915 - - - zona pellucida binding protein 2 [Source:NCBI gene;Acc:404532]
54. NUDT12 ENSGALG00000015268 2 0.915 - - - - - - 0.915 - - - nudix hydrolase 12 [Source:HGNC Symbol;Acc:HGNC:18826]
55. ENSGALG00000009794 ENSGALG00000009794 5 0.915 - - - - - - 0.915 - - -
56. BICD2 ENSGALG00000005249 17 0.915 - - - - - - 0.915 - - - BICD cargo adaptor 2 [Source:HGNC Symbol;Acc:HGNC:17208]
57. SERPINA12 SERPINA12 3 0.915 - - - - - - 0.915 - - -
58. XDH ENSGALG00000008701 10 0.915 - - - - - - 0.915 - - - xanthine dehydrogenase [Source:NCBI gene;Acc:396025]
59. WNT5B ENSGALG00000012998 35 0.915 - - - - - - 0.915 - - - Wnt family member 5B [Source:NCBI gene;Acc:418154]
60. PHACTR2 ENSGALG00000013768 44 0.915 - - - - - - 0.915 - - - phosphatase and actin regulator 2 [Source:HGNC Symbol;Acc:HGNC:20956]
61. KCTD14 ENSGALG00000017266 31 0.915 - - - - - - 0.915 - - - potassium channel tetramerization domain containing 14 [Source:NCBI gene;Acc:419029]
62. ACYP2 ENSGALG00000027632 90 0.915 - - - - - - 0.915 - - - acylphosphatase 2 [Source:NCBI gene;Acc:421217]
63. ABL2 ENSGALG00000030357 39 0.915 - - - - - - 0.915 - - - ABL proto-oncogene 2, non-receptor tyrosine kinase, transcript variant X2
64. BLOC1S4 ENSGALG00000013591 91 0.915 - - - - - - 0.915 - - - biogenesis of lysosomal organelles complex 1 subunit 4
65. PLGL ENSGALG00000028886 3 0.915 - - - - - - 0.915 - - - plasminogen-like
66. APBB1 ENSGALG00000046164 5 0.915 - - - - - - 0.915 - - - amyloid beta precursor protein binding family B member 1 [Source:HGNC Symbol;Acc:HGNC:581]
67. OGFR ENSGALG00000005609 3 0.915 - - - - - - 0.915 - - - opioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]
68. PRLR ENSGALG00000003446 19 0.915 - - - - - - 0.915 - - - prolactin receptor [Source:NCBI gene;Acc:395660]
69. OGN ENSGALG00000026736 223 0.915 - - - - - - 0.915 - - - osteoglycin [Source:NCBI gene;Acc:374039]
70. NINL 40 0.915 - - - - - - 0.915 - - - ninein like, transcript variant X15
71. ENSGALG00000014605 ENSGALG00000014605 1 0.915 - - - - - - 0.915 - - -
72. LOC101749460 ENSGALG00000029056 1 0.915 - - - - - - 0.915 - - - interleukin-31 receptor subunit alpha-like
73. PRIMA1 ENSGALG00000020392 13 0.915 - - - - - - 0.915 - - - proline rich membrane anchor 1 [Source:NCBI gene;Acc:772317]
74. BBS9 ENSGALG00000031650 13 0.915 - - - - - - 0.915 - - - Bardet-Biedl syndrome 9, transcript variant X5
75. B3GALT1 ENSGALG00000010931 6 0.915 - - - - - - 0.915 - - - beta-1,3-galactosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:916]
76. ENSGALG00000020676 ENSGALG00000020676 2 0.915 - - - - - - 0.915 - - -
77. TTC34 ENSGALG00000001081 8 0.915 - - - - - - 0.915 - - - tetratricopeptide repeat domain 34 [Source:HGNC Symbol;Acc:HGNC:34297]
78. CPNE4 ENSGALG00000029235 32 0.915 - - - - - - 0.915 - - - copine 4 [Source:HGNC Symbol;Acc:HGNC:2317]
79. TMPRSS7 ENSGALG00000015389 12 0.915 - - - - - - 0.915 - - - transmembrane serine protease 7 [Source:HGNC Symbol;Acc:HGNC:30846]
80. ANKRD33B ENSGALG00000038328 22 0.915 - - - - - - 0.915 - - - ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:HGNC:35240]
81. CHTL1A CHTL1A 79 0.915 - - - - - - 0.915 - - -
82. TRAPPC9 ENSGALG00000042766 10 0.915 - - - - - - 0.915 - - - trafficking protein particle complex 9 [Source:HGNC Symbol;Acc:HGNC:30832]
83. RXFP1 ENSGALG00000009429 10 0.915 - - - - - - 0.915 - - - relaxin family peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:19718]
84. BACE1 ENSGALG00000007298 3 0.915 - - - - - - 0.915 - - - beta-secretase 1 [Source:HGNC Symbol;Acc:HGNC:933]
85. SLC18A2 ENSGALG00000009289 11 0.915 - - - - - - 0.915 - - - solute carrier family 18 member A2 [Source:HGNC Symbol;Acc:HGNC:10935]
86. KRT9 KRT9 7 0.915 - - - - - - 0.915 - - -
87. ARHGAP31 ENSGALG00000015077 19 0.915 - - - - - - 0.915 - - - Rho GTPase activating protein 31 [Source:HGNC Symbol;Acc:HGNC:29216]
88. TRH ENSGALG00000008490 16 0.915 - - - - - - 0.915 - - - thyrotropin releasing hormone [Source:NCBI gene;Acc:414344]
89. ABHD2 ENSGALG00000006689 29 0.915 - - - - - - 0.915 - - - abhydrolase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18717]
90. ARMC2 ENSGALG00000015289 18 0.915 - - - - - - 0.915 - - - armadillo repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:23045]
91. LRRC31 ENSGALG00000023616 55 0.912 - - - - - - - - - 0.912 leucine rich repeat containing 31 [Source:HGNC Symbol;Acc:HGNC:26261]
92. CXCL13L2 ENSGALG00000010338 370 0.911 - - - - - - - - - 0.911 C-X-C motif chemokine ligand 13-like 2 [Source:NCBI gene;Acc:422510]
93. DCLRE1B ENSGALG00000028626 48 0.906 - - - - - - - - - 0.906 DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
94. C1orf116 ENSGALG00000001091 34 0.899 - - - - - - - - - 0.899 chromosome 1 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28667]
95. ENSGALG00000026592 ENSGALG00000026592 4331 0.897 - - - - - - 0.897 - - -
96. ENSGALG00000002444 ENSGALG00000002444 4 0.891 - - - - - 0.891 - - - -
97. KCNJ15 ENSGALG00000016055 66 0.89 - - - - - - - - - 0.890 potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
98. MOV10 ENSGALG00000001558 244 0.89 - - - - - - - - - 0.890 Mov10 RISC complex RNA helicase [Source:NCBI gene;Acc:419872]
99. S100A9 ENSGALG00000024272 103 0.888 - - - - - - - - - 0.888 S100 calcium binding protein A9 [Source:NCBI gene;Acc:426356]
100. CLDN20 ENSGALG00000027634 25 0.887 - - - - - - - - - 0.887 claudin 20 [Source:HGNC Symbol;Acc:HGNC:2042]

There are 278 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA