Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CLIP1

Gene Name Gene ID Reads Annotation
CLIP1 ENSGALG00000004467 1058 CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]











Genes with expression patterns similar to CLIP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CLIP1 ENSGALG00000004467 1058 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]
2. CEP192 ENSGALG00000035625 2270 1.786 - - - - - - - 0.995 - 0.791 centrosomal protein 192 [Source:HGNC Symbol;Acc:HGNC:25515]
3. NMD3 ENSGALG00000009533 8726 1.767 - - - - - - - 0.971 - 0.796 NMD3 ribosome export adaptor [Source:HGNC Symbol;Acc:HGNC:24250]
4. UBE3C ENSGALG00000006461 57 1.651 - - - - - 0.769 - - - 0.882 ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
5. DUSP23 1663 1.616 - - - - - - - - 0.763 0.853 dual specificity phosphatase 23, transcript variant X1
6. CDK8 ENSGALG00000017104 5956 1.601 - - - - - - - 0.863 - 0.738 cyclin dependent kinase 8, transcript variant X4
7. EEFSEC ENSGALG00000038684 298 0.999 - - - - - - - 0.999 - - eukaryotic elongation factor, selenocysteine-tRNA specific [Source:HGNC Symbol;Acc:HGNC:24614]
8. COL14A1 ENSGALG00000037675 2652 0.999 - - - - - - - 0.999 - - collagen type XIV alpha 1 chain [Source:NCBI gene;Acc:396276]
9. B9D1 ENSGALG00000005096 760 0.999 - - - - - - - 0.999 - - B9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24123]
10. TCTEX1D2 ENSGALG00000027722 2201 0.999 - - - - - - - 0.999 - - Tctex1 domain containing 2
11. TNPO3 ENSGALG00000039420 5178 0.999 - - - - - - - 0.999 - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
12. GOT2 ENSGALG00000002321 4961 0.999 - - - - - - - 0.999 - - glutamic-oxaloacetic transaminase 2 [Source:NCBI gene;Acc:396533]
13. POLR3H ENSGALG00000011947 2899 0.999 - - - - - - - 0.999 - - RNA polymerase III subunit H [Source:NCBI gene;Acc:417990]
14. C26H6ORF106 C26H6ORF106 2168 0.999 - - - - - - - 0.999 - -
15. PRKAR2A ENSGALG00000007023 909 0.999 - - - - - - - 0.999 - - protein kinase cAMP-dependent type II regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9391]
16. WDR91 ENSGALG00000011724 5787 0.999 - - - - - - - 0.999 - - WD repeat domain 91 [Source:NCBI gene;Acc:417939]
17. LYRM4 ENSGALG00000027339 2917 0.998 - - - - - - - 0.998 - - LYR motif containing 4 [Source:NCBI gene;Acc:420874]
18. PM20D1 ENSGALG00000000724 2108 0.998 - - - - - - - 0.998 - - peptidase M20 domain containing 1 [Source:NCBI gene;Acc:419838]
19. MRPS31 ENSGALG00000017033 9287 0.998 - - - - - - - 0.998 - - mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
20. ANGIOPOIETIN-2 ANGIOPOIETIN-2 920 0.998 - - - - - - - 0.998 - -
21. TLE3 ENSGALG00000008120 2655 0.998 - - - - - - - 0.998 - - transducin like enhancer of split 3, transcript variant X10
22. EPM2A ENSGALG00000012275 872 0.998 - - - - - - - 0.998 - - EPM2A, laforin glucan phosphatase [Source:NCBI gene;Acc:421611]
23. TNFRSF11B ENSGALG00000043167 911 0.998 - - - - - - - 0.998 - - TNF receptor superfamily member 11b [Source:NCBI gene;Acc:378803]
24. CCDC167 ENSGALG00000010151 3567 0.998 - - - - - - - 0.998 - - coiled-coil domain containing 167 [Source:NCBI gene;Acc:421433]
25. ARFGAP3 ENSGALG00000014140 4612 0.997 - - - - - - - 0.997 - - ADP ribosylation factor GTPase activating protein 3 [Source:NCBI gene;Acc:418224]
26. KCNK5 ENSGALG00000034077 3233 0.997 - - - - - - - 0.997 - - potassium two pore domain channel subfamily K member 5 [Source:HGNC Symbol;Acc:HGNC:6280]
27. GNG10 ENSGALG00000015683 6905 0.997 - - - - - - - 0.997 - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
28. ELMO2 ENSGALG00000007246 4569 0.997 - - - - - - - 0.997 - - engulfment and cell motility 2 [Source:HGNC Symbol;Acc:HGNC:17233]
29. KPNA1 ENSGALG00000014426 2724 0.996 - - - - - - - 0.996 - - karyopherin subunit alpha 1 [Source:NCBI gene;Acc:418271]
30. MRPS7 ENSGALG00000007999 5445 0.996 - - - - - - - 0.996 - - mitochondrial ribosomal protein S7 [Source:NCBI gene;Acc:422122]
31. OTUD4 ENSGALG00000009968 3919 0.994 - - - - - - - 0.994 - - OTU deubiquitinase 4 [Source:HGNC Symbol;Acc:HGNC:24949]
32. NOVA1 ENSGALG00000009850 7584 0.994 - - - - - - - 0.994 - - uncharacterized LOC423300 [Source:NCBI gene;Acc:423300]
33. CAPZA1 ENSGALG00000001547 24242 0.993 - - - - - - - 0.993 - - capping actin protein of muscle Z-line alpha subunit 1 [Source:NCBI gene;Acc:396521]
34. RAB24 ENSGALG00000002984 6264 0.992 - - - - - - - 0.992 - - RAB24, member RAS oncogene family [Source:NCBI gene;Acc:427627]
35. MFF ENSGALG00000003079 5289 0.991 - - - - - - - 0.991 - - mitochondrial fission factor [Source:HGNC Symbol;Acc:HGNC:24858]
36. BMP5 ENSGALG00000016293 2119 0.991 - - - - - - - 0.991 - - bone morphogenetic protein 5 [Source:NCBI gene;Acc:396053]
37. L3HYPDH ENSGALG00000012011 2212 0.99 - - - - - - - 0.990 - - trans-L-3-hydroxyproline dehydratase [Source:HGNC Symbol;Acc:HGNC:20488]
38. SGCE ENSGALG00000009670 3070 0.989 - - - - - - - 0.989 - - sarcoglycan epsilon [Source:HGNC Symbol;Acc:HGNC:10808]
39. TRIM9 ENSGALG00000012367 1267 0.989 - - - - - - - 0.989 - - tripartite motif containing 9 [Source:HGNC Symbol;Acc:HGNC:16288]
40. LGMN ENSGALG00000010811 7401 0.989 - - - - - - - 0.989 - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
41. SERPINH1 ENSGALG00000011214 15311 0.989 - - - - - - - 0.989 - - serpin family H member 1 [Source:NCBI gene;Acc:396228]
42. SLC25A14 ENSGALG00000004063 5574 0.988 - - - - - - - 0.988 - - solute carrier family 25 member 14 [Source:NCBI gene;Acc:422141]
43. HHIP ENSGALG00000009948 1536 0.988 - - - - - - - 0.988 - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
44. TRMT10A ENSGALG00000012264 2467 0.987 - - - - - - - 0.987 - - tRNA methyltransferase 10A [Source:HGNC Symbol;Acc:HGNC:28403]
45. SHROOM2 ENSGALG00000030802 4517 0.987 - - - - - - - 0.987 - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
46. ATPAF1 ENSGALG00000010444 3677 0.987 - - - - - - - 0.987 - - ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
47. PDIA5 ENSGALG00000011689 6913 0.987 - - - - - - - 0.987 - - protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
48. UPF3B ENSGALG00000008618 12350 0.985 - - - - - - - 0.985 - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
49. BRMS1L ENSGALG00000010093 4964 0.981 - - - - - - - 0.981 - - BRMS1 like transcriptional repressor [Source:NCBI gene;Acc:423328]
50. PTP4A1 ENSGALG00000016271 23953 0.98 - - - - - - - 0.980 - - protein tyrosine phosphatase type IVA, member 1 [Source:NCBI gene;Acc:421877]
51. ENSGALG00000002595 ENSGALG00000002595 32163 0.979 - - - - - - - 0.979 - -
52. CYB5B ENSGALG00000000660 9733 0.978 - - - - - - - 0.978 - - cytochrome b5 type B [Source:NCBI gene;Acc:415865]
53. ISCA1 ENSGALG00000012606 10342 0.978 - - - - - - - 0.978 - - iron-sulfur cluster assembly 1 [Source:NCBI gene;Acc:427463]
54. ARID4A ENSGALG00000012037 8554 0.976 - - - - - - - 0.976 - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
55. FAM136A ENSGALG00000042163 39487 0.973 - - - - - - - 0.973 - - family with sequence similarity 136 member A [Source:NCBI gene;Acc:426296]
56. RPB6 RPB6 9517 0.97 - - - - - - - 0.970 - -
57. COPS3 ENSGALG00000004834 16012 0.961 - - - - - - - 0.961 - - COP9 signalosome subunit 3 [Source:NCBI gene;Acc:416504]
58. CAT ENSGALG00000030187 7534 0.96 - - - - - - - 0.960 - - catalase [Source:NCBI gene;Acc:423600]
59. NAT10 ENSGALG00000014573 12754 0.96 - - - - - - - 0.960 - - N-acetyltransferase 10 [Source:NCBI gene;Acc:426609]
60. GSTO1 ENSGALG00000008409 7561 0.955 - - - - - - - 0.955 - - glutathione S-transferase omega 1 [Source:NCBI gene;Acc:423881]
61. RFC4 ENSGALG00000008703 5842 0.953 - - - - - - - 0.953 - - replication factor C subunit 4 [Source:NCBI gene;Acc:424958]
62. CNOT6 ENSGALG00000034316 10496 0.952 - - - - - - - 0.952 - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
63. MAP2 ENSGALG00000002789 6597 0.951 - - - - - - - 0.951 - - microtubule associated protein 2, transcript variant X33
64. IDI1 ENSGALG00000006723 7761 0.949 - - - - - - - 0.949 - - isopentenyl-diphosphate delta isomerase 1, transcript variant X1
65. DGKZ ENSGALG00000008380 5389 0.949 - - - - - - - 0.949 - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
66. FAM122A ENSGALG00000006127 9630 0.947 - - - - - - - 0.947 - - family with sequence similarity 122A [Source:NCBI gene;Acc:422237]
67. MRPL38 ENSGALG00000002194 6648 0.937 - - - - - - - 0.937 - - mitochondrial ribosomal protein L38 [Source:NCBI gene;Acc:770172]
68. ATG12 ENSGALG00000002345 3607 0.937 - - - - - - - 0.937 - - autophagy related 12 [Source:HGNC Symbol;Acc:HGNC:588]
69. PAX1 ENSGALG00000039040 3339 0.934 - - - - - - - 0.934 - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
70. N6AMT2 N6AMT2 4703 0.934 - - - - - - - 0.934 - -
71. PHLDA2 ENSGALG00000032687 7733 0.934 - - - - - - - 0.934 - - pleckstrin homology like domain family A member 2 [Source:NCBI gene;Acc:423088]
72. PLCL2 ENSGALG00000011248 162 0.931 - - - - - - - - - 0.931 phospholipase C like 2 [Source:HGNC Symbol;Acc:HGNC:9064]
73. CNDP2 ENSGALG00000019514 19531 0.929 - - - - - - - 0.929 - - carnosine dipeptidase 2 [Source:NCBI gene;Acc:421013]
74. UBE2F ENSGALG00000003812 13874 0.928 - - - - - - - 0.928 - - ubiquitin conjugating enzyme E2 F (putative) [Source:NCBI gene;Acc:424015]
75. BDH1_1 ENSGALG00000023601 6109 0.922 - - - - - - - 0.922 - - 3-hydroxybutyrate dehydrogenase, type 1
76. ACO2 ENSGALG00000011950 30387 0.922 - - - - - - - 0.922 - - aconitase 2 [Source:NCBI gene;Acc:374009]
77. AES ENSGALG00000029503 17676 0.912 - - - - - - - 0.912 - - amino-terminal enhancer of split [Source:HGNC Symbol;Acc:HGNC:307]
78. TCN2 3959 0.908 - - - - - - - - - 0.908 transcobalamin 2
79. PPP1CC ENSGALG00000004571 14748 0.908 - - - - - - - 0.908 - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
80. C5orf24 ENSGALG00000006371 1573 0.906 - - - - - - - - - 0.906 chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
81. PHF2 ENSGALG00000039208 2003 0.905 - - - - - - - - - 0.905 PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
82. SOSTDC1 ENSGALG00000036836 1081 0.902 - - - - - - - - - 0.902 sclerostin domain containing 1 [Source:NCBI gene;Acc:378800]
83. ATL1 ENSGALG00000012339 3789 0.902 - - - - - - - - - 0.902 atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
84. PTPN11 ENSGALG00000004821 2658 0.899 - - - - - - - - - 0.899 protein tyrosine phosphatase, non-receptor type 11 [Source:NCBI gene;Acc:395815]
85. PDCD4 ENSGALG00000008700 574 0.898 - - - - - - - - - 0.898 programmed cell death 4 [Source:NCBI gene;Acc:374191]
86. WWC1 ENSGALG00000001826 4666 0.892 - - - - - - - - - 0.892 WW and C2 domain containing 1 [Source:NCBI gene;Acc:416167]
87. FOXP1 127 0.888 - - - - - - - - - 0.888 forkhead box P1, transcript variant X14
88. gga-mir-6681 ENSGALG00000027840 546 0.888 - - - - - - - - - 0.888 gga-mir-6681 [Source:miRBase;Acc:MI0022502]
89. TATDN1 ENSGALG00000041072 1585 0.887 - - - - - - - - - 0.887 TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
90. TFG ENSGALG00000015299 849 0.885 - - - - - - - - - 0.885 TRK-fused gene [Source:HGNC Symbol;Acc:HGNC:11758]
91. SOS2 ENSGALG00000012273 41 0.885 - - - - - - - - - 0.885 SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]
92. TRIM24 ENSGALG00000012823 2725 0.884 - - - - - - - - - 0.884 tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
93. ENSGALG00000008594 ENSGALG00000008594 54 0.883 - - - - - - - - - 0.883
94. MAP3K8 ENSGALG00000007356 188 0.883 - - - - - - - - - 0.883 mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
95. CNKSR3 ENSGALG00000027159 41 0.882 - - - - - - - - - 0.882 CNKSR family member 3, transcript variant X2
96. PROCR ENSGALG00000006547 645 0.882 - - - - - - - - - 0.882 protein C receptor [Source:NCBI gene;Acc:424867]
97. TGFB3 ENSGALG00000010346 3118 0.881 - - - - - - - - - 0.881 transforming growth factor beta 3 [Source:NCBI gene;Acc:396438]
98. DTX2 ENSGALG00000001905 1475 0.881 - - - - - - - - - 0.881 deltex E3 ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:15973]
99. ADAMTS12 55 0.881 - - - - - - - - - 0.881 ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
100. TM6SF2 ENSGALG00000029015 109 0.88 - - - - - - - - - 0.880 transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]

There are 363 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA