Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CIRBP

Gene Name Gene ID Reads Annotation
CIRBP ENSGALG00000030918 309258 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]











Genes with expression patterns similar to CIRBP

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CIRBP ENSGALG00000030918 309258 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
2. HNRNPDL ENSGALG00000023199 112033 1.551 - 0.848 - - - 0.703 - - - - heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
3. LDHB ENSGALG00000035836 169726 1.475 - 0.713 - - - 0.762 - - - - lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
4. HNRNPA2B1 ENSGALG00000011036 53662 1.456 - 0.724 - - - 0.732 - - - - heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
5. RPS12 ENSGALG00000013990 309853 0.906 - - - - - - 0.906 - - - ribosomal protein S12 [Source:NCBI gene;Acc:421698]
6. PSMD7 ENSGALG00000000707 26350 0.835 - - - - - 0.835 - - - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
7. TUBB2C TUBB2C 44249 0.823 - - - - - 0.823 - - - -
8. DNAJA1 ENSGALG00000023066 3820 0.819 - - - - - 0.819 - - - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
9. HSPA8 ENSGALG00000006512 124825 0.818 - - - - - 0.818 - - - - heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
10. RPL35 ENSGALG00000035677 252113 0.795 0.795 - - - - - - - - - ribosomal protein L35 [Source:NCBI gene;Acc:374133]
11. NCAM1 ENSGALG00000007839 19929 0.782 - - - - - 0.782 - - - - Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001242604]
12. TCOF1 ENSGALG00000005535 24554 0.778 - - - - - 0.778 - - - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
13. HSPA5 ENSGALG00000001000 40342 0.777 - - - - - 0.777 - - - - heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
14. HELLS ENSGALG00000005451 7094 0.774 - - - - - 0.774 - - - - helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
15. HNRNPH3 ENSGALG00000003947 28724 0.773 - - - - - 0.773 - - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
16. CNBP 42704 0.77 - - - - - 0.770 - - - - CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
17. JSC JSC 7982 0.766 - - - - - 0.766 - - - -
18. KDM5B ENSGALG00000038948 50645 0.764 - - - - - 0.764 - - - - lysine demethylase 5B [Source:NCBI gene;Acc:421168]
19. WDR61 ENSGALG00000003221 11352 0.763 - - - - - - - 0.763 - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
20. LUC7L2 ENSGALG00000036238 11817 0.763 - - - - - - - 0.763 - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
21. EIF5A2 ENSGALG00000009309 143671 0.756 - - - - - 0.756 - - - - eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
22. DEK ENSGALG00000012684 14179 0.754 - - - - - - - 0.754 - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
23. NAT10 ENSGALG00000014573 12754 0.752 - - - - - 0.752 - - - - N-acetyltransferase 10 [Source:NCBI gene;Acc:426609]
24. CHCHD10 ENSGALG00000028810 10389 0.752 - - - - - 0.752 - - - - coiled-coil-helix-coiled-coil-helix domain containing 10 [Source:HGNC Symbol;Acc:HGNC:15559]
25. ZBTB16 ENSGALG00000038540 5544 0.751 - - - - - 0.751 - - - - Gallus gallus zinc finger and BTB domain containing 32 (ZBTB32), mRNA. [Source:RefSeq mRNA;Acc:NM_001321488]
26. AHSA1 ENSGALG00000010463 15252 0.75 - - - - - 0.750 - - - - activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]
27. EIF4G2 ENSGALG00000005587 185529 0.749 - - - - - 0.749 - - - - eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. SURF6 ENSGALG00000038413 11178 0.749 - - - - - - - 0.749 - - surfeit 6 [Source:NCBI gene;Acc:417160]
29. CMPK CMPK 9569 0.746 - - - - - - - 0.746 - -
30. RPL13 ENSGALG00000006179 345032 0.744 0.744 - - - - - - - - - ribosomal protein L13 [Source:NCBI gene;Acc:395849]
31. EMP1 ENSGALG00000011803 351 0.742 - - - - - 0.742 - - - - epithelial membrane protein 1 [Source:NCBI gene;Acc:417964]
32. MIF ENSGALG00000006326 109683 0.742 - - - - - 0.742 - - - - macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
33. MRPL20 ENSGALG00000001542 28764 0.742 - - - - - 0.742 - - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
34. SMNDC1 ENSGALG00000008561 14415 0.742 - - - - - - - 0.742 - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
35. SMOC1 ENSGALG00000009415 2403 0.742 - - - - - 0.742 - - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
36. C4orf27 C4orf27 16724 0.739 - - - - - 0.739 - - - -
37. UBE2B ENSGALG00000032664 6069 0.738 - - - - - - - 0.738 - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
38. SDOS SDOS 66125 0.738 - - - - - 0.738 - - - -
39. DYNC1LI1 ENSGALG00000011491 11011 0.737 - - - - - - - 0.737 - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
40. SDHA ENSGALG00000013167 6509 0.737 - - - - - - - 0.737 - - succinate dehydrogenase complex flavoprotein subunit A [Source:NCBI gene;Acc:395758]
41. THUMPD3 ENSGALG00000008394 17711 0.737 - - - - - 0.737 - - - - THUMP domain containing 3, transcript variant X2
42. DKC1 ENSGALG00000005054 30350 0.737 - - - - - - - 0.737 - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
43. METAP2 ENSGALG00000011377 16311 0.737 - - - - 0.737 - - - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
44. ATP5G3 168626 0.736 - - - - 0.736 - - - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. ZEB1 ENSGALG00000007260 9277 0.736 - - - - - - - 0.736 - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
46. TIMM23B ENSGALG00000002089 8122 0.736 - - - - - 0.736 - - - - translocase of inner mitochondrial membrane 23 homolog B
47. ALDOC ENSGALG00000026077 106910 0.736 - - - - - 0.736 - - - - aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
48. TBC1D1 ENSGALG00000039380 4423 0.735 - - - - - - - 0.735 - - TBC1 domain family member 1 [Source:NCBI gene;Acc:426162]
49. PEBP1 ENSGALG00000007403 77502 0.735 - - - - - 0.735 - - - - phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
50. TRAPPC6B ENSGALG00000010157 7567 0.734 - - - - 0.734 - - - - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
51. G3BP1 ENSGALG00000004160 36795 0.734 - - - - - 0.734 - - - - G3BP stress granule assembly factor 1 [Source:NCBI gene;Acc:416265]
52. RPS13 ENSGALG00000006096 170517 0.734 0.734 - - - - - - - - - ribosomal protein S13 [Source:NCBI gene;Acc:414782]
53. USP14 ENSGALG00000014920 18778 0.734 - - - - - 0.734 - - - - ubiquitin specific peptidase 14 [Source:HGNC Symbol;Acc:HGNC:12612]
54. EIF1AY ENSGALG00000016410 6431 0.733 - - - - - - - 0.733 - - eukaryotic translation initiation factor 1A, Y-linked [Source:NCBI gene;Acc:418606]
55. PES1 ENSGALG00000007778 12248 0.732 - - - - - - - 0.732 - - pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
56. TMEM108 ENSGALG00000036412 2903 0.73 - - - - - 0.730 - - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
57. SOX9 ENSGALG00000004386 14802 0.729 - - - - - - - 0.729 - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
58. EIF5 ENSGALG00000011464 62584 0.729 - 0.729 - - - - - - - - eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
59. POLR2H ENSGALG00000008534 21521 0.728 - - - - - - - 0.728 - - RNA polymerase II subunit H [Source:NCBI gene;Acc:424954]
60. EI24 ENSGALG00000038097 24081 0.728 - - - - - 0.728 - - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
61. CDC40 ENSGALG00000015061 6118 0.728 - - - - - - - 0.728 - - cell division cycle 40 [Source:NCBI gene;Acc:421760]
62. EMC7 ENSGALG00000009637 4969 0.728 - - - - - - - 0.728 - - ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
63. MRPS36 ENSGALG00000014789 7584 0.727 - - - - - 0.727 - - - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
64. RPS2 ENSGALG00000005490 293634 0.725 - - - - - - - - - 0.725 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
65. WDR92 ENSGALG00000008760 3934 0.725 - - - - - - - 0.725 - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
66. C4orf46 ENSGALG00000009432 3255 0.723 - - - - - - - 0.723 - - chromosome 4 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:27320]
67. DCTN6 ENSGALG00000010298 7507 0.723 - - - - - - - 0.723 - - dynactin subunit 6 [Source:NCBI gene;Acc:771257]
68. MDH2 ENSGALG00000001949 68323 0.722 - - - - - 0.722 - - - - malate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6971]
69. PSMA7 ENSGALG00000030411 42436 0.722 - - - - - - - - - 0.722 proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
70. GPR176 ENSGALG00000009619 5804 0.722 - - - - - 0.722 - - - - G protein-coupled receptor 176 [Source:HGNC Symbol;Acc:HGNC:32370]
71. CKAP2 ENSGALG00000017025 25020 0.721 - - - - 0.721 - - - - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
72. ACTR6 ENSGALG00000040976 31271 0.721 - - - - - 0.721 - - - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
73. RPF1 ENSGALG00000008796 9809 0.72 - - - - 0.720 - - - - - ribosome production factor 1 homolog
74. ANKRD49 ENSGALG00000017210 3247 0.719 - - - - - - - 0.719 - - ankyrin repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:25970]
75. IFT81 ENSGALG00000003854 2534 0.719 - - - - - - - 0.719 - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
76. YWHAH ENSGALG00000006743 29828 0.719 - - - - - 0.719 - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
77. AIF1L ENSGALG00000029834 13866 0.719 - - - - - 0.719 - - - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
78. CCT4 ENSGALG00000008812 78267 0.718 - - - - - 0.718 - - - - chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
79. EYA2 ENSGALG00000004508 939 0.718 - - - - - 0.718 - - - - Gallus gallus EYA transcriptional coactivator and phosphatase 2 (EYA2), mRNA. [Source:RefSeq mRNA;Acc:NM_204915]
80. BCL2L1 ENSGALG00000006211 2490 0.718 - - - - - - - 0.718 - - BCL2 like 1 [Source:NCBI gene;Acc:373954]
81. TYMS ENSGALG00000014897 20484 0.716 - - - - - 0.716 - - - - thymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]
82. ACTR3 ENSGALG00000012159 16020 0.715 - - - - - - - 0.715 - - ARP3 actin related protein 3 homolog [Source:NCBI gene;Acc:374197]
83. EXOSC2 ENSGALG00000040373 24275 0.715 - - - - - 0.715 - - - - exosome component 2 [Source:NCBI gene;Acc:417182]
84. ATOX1 ENSGALG00000004176 16486 0.715 - - - - - - - 0.715 - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
85. HOXB2 ENSGALG00000025774 5280 0.714 - - - - - 0.714 - - - - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
86. POLR2E ENSGALG00000002591 26405 0.714 - - - - - 0.714 - - - - RNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]
87. C28H19ORF10 C28H19ORF10 16529 0.714 - - - - - - - 0.714 - -
88. FNBP4 ENSGALG00000029702 6421 0.713 0.713 - - - - - - - - - formin binding protein 4 [Source:HGNC Symbol;Acc:HGNC:19752]
89. PRMT3 ENSGALG00000003958 14160 0.713 - - - - - 0.713 - - - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
90. PRTG ENSGALG00000037336 34665 0.713 - - - - - 0.713 - - - - protogenin [Source:NCBI gene;Acc:415407]
91. U2AF1 ENSGALG00000016198 45027 0.713 0.713 - - - - - - - - - U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
92. ELP3 ENSGALG00000016624 4483 0.711 - - - - - - - 0.711 - - elongator acetyltransferase complex subunit 3 [Source:NCBI gene;Acc:422021]
93. ADH5 ENSGALG00000012245 38217 0.711 - - - - 0.711 - - - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
94. YARS ENSGALG00000003563 11093 0.711 - - - - - 0.711 - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
95. PDS5B ENSGALG00000017070 3998 0.71 - - - - - - - 0.710 - - PDS5 cohesin associated factor B [Source:NCBI gene;Acc:418910]
96. TPMT ENSGALG00000012687 9537 0.71 - - - - 0.710 - - - - - thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:HGNC:12014]
97. CHEK2 ENSGALG00000005695 1558 0.71 - - - - - - - 0.710 - - checkpoint kinase 2 [Source:NCBI gene;Acc:768913]
98. VPS39 ENSGALG00000008991 4018 0.71 - - - - - - - 0.710 - - VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
99. PPP2R5D ENSGALG00000040005 6804 0.709 - - - - - - - 0.709 - - protein phosphatase 2 regulatory subunit B'delta [Source:HGNC Symbol;Acc:HGNC:9312]
100. TAGLN3 ENSGALG00000015379 7865 0.709 - - - - - 0.709 - - - - transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]

There are 37 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA