Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CIR1

Gene Name Gene ID Reads Annotation
CIR1 ENSDARG00000099733 66 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]










Genes with expression patterns similar to CIR1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. CIR1 ENSDARG00000099733 66 8 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]
2. slc22a7a ENSDARG00000056028 2426 2.455 0.818 0.890 - - - 0.747 - - - solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
3. figf 48 2 1.000 1.000 - - - - - - - c-fos induced growth factor, transcript variant X2
4. rgs8 ENSDARG00000070037, ENSDARG00000111478 37 2 1.000 1.000 - - - - - - - regulator of G protein signaling 8 [Source:ZFIN;Acc:ZDB-GENE-040718-264]
5. MLLT4 MLLT4 67 2 1.000 1.000 - - - - - - -
6. nmrk1 ENSDARG00000037913 18 2 1.000 1.000 - - - - - - - nicotinamide riboside kinase 1 [Source:ZFIN;Acc:ZDB-GENE-050320-8]
7. si:ch211-152l15.4 si:ch211-152l15.4 13 2 1.000 1.000 - - - - - - -
8. sez6l ENSDARG00000100594 35 2 1.000 1.000 - - - - - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
9. SMARCA4 ENSDARG00000104339 48 1.954 - 1.000 - 0.954 - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
10. dclre1a ENSDARG00000091768 94 1.946 0.946 1.000 - - - - - - - DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-124]
11. rassf4 ENSDARG00000012460 43 1.941 - 1.000 - 0.941 - - - - - Ras association (RalGDS/AF-6) domain family member 4 [Source:ZFIN;Acc:ZDB-GENE-050102-3]
12. supt3h ENSDARG00000098141 18 1.913 0.913 1.000 - - - - - - - SPT3 homolog, SAGA and STAGA complex component [Source:ZFIN;Acc:ZDB-GENE-040718-370]
13. rhoab ENSDARG00000094673 26 1.904 0.905 - - - - 0.999 - - - ras homolog gene family, member Ab [Source:ZFIN;Acc:ZDB-GENE-040322-2]
14. htra1b ENSDARG00000014907 146 1.888 1.000 - - 0.888 - - - - - HtrA serine peptidase 1b [Source:ZFIN;Acc:ZDB-GENE-080219-7]
15. sdccag3 239 1.887 1.000 - - - - 0.887 - - - serologically defined colon cancer antigen 3, transcript variant X2
16. panx1b ENSDARG00000014910, ENSDARG00000112399 136 1.884 - 1.000 - 0.884 - - - - - pannexin 1b [Source:ZFIN;Acc:ZDB-GENE-070705-192]
17. vcam1 vcam1 243 1.871 0.871 1.000 - - - - - - -
18. pcgf5b ENSDARG00000052388 163 1.87 0.871 - - - - 0.999 - - - polycomb group ring finger 5b [Source:ZFIN;Acc:ZDB-GENE-060512-34]
19. sc:d0139 sc:d0139 233 1.853 - - - 0.858 - 0.995 - - -
20. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 1.836 1.000 - - 0.836 - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
21. dhrs13a.2 ENSDARG00000111240 491 1.823 - - - 0.839 - 0.984 - - - dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
22. KIF2A_1 ENSDARG00000043571 189 1.805 - 1.000 - - 0.805 - - - - kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
23. tmem178 ENSDARG00000020758 77 1.802 - 1.000 - - 0.802 - - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
24. slc9a6a ENSDARG00000009209, ENSDARG00000111329 184 1.799 - - - - 0.802 0.997 - - - solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6a [Source:ZFIN;Acc:ZDB-GENE-070424-104]
25. UBASH3B_1 UBASH3B_1 28 1.792 - 0.961 - - 0.831 - - - -
26. si:ch73-173m3.3 si:ch73-173m3.3 425 1.784 - 0.872 - - - 0.912 - - -
27. si:dkey-9i23.6 ENSDARG00000094678 58 1.782 1.000 - - - 0.782 - - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
28. aatkb ENSDARG00000104442 392 1.778 0.778 1.000 - - - - - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
29. ccdc80l2 ENSDARG00000044695 150 1.77 - - - 0.799 - 0.971 - - - coiled-coil domain containing 80 like 2 [Source:ZFIN;Acc:ZDB-GENE-091118-63]
30. EXD1 ENSDARG00000098669 27 1.764 0.823 0.941 - - - - - - - exonuclease 3'-5' domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060825-267]
31. FNBP1 FNBP1 441 1.752 0.868 - - - - 0.884 - - -
32. rab3da ENSDARG00000018107 28 1.75 1.000 - - - 0.750 - - - - RAB3D, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-080722-14]
33. CABZ01057013.1 CABZ01057013.1 1308 1.741 - - - 0.841 - 0.900 - - -
34. DOCK4 DOCK4 78 1.741 0.741 1.000 - - - - - - -
35. C17H15orf41 C17H15orf41 313 1.74 - 0.843 - 0.897 - - - - -
36. CU694319.1 CU694319.1 72 1.737 1.000 - - - 0.737 - - - -
37. wdr17 ENSDARG00000075098 83 1.733 0.733 1.000 - - - - - - - WD repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-090313-131]
38. dapk3 ENSDARG00000074447 12 1.732 1.000 0.732 - - - - - - - death-associated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3026]
39. GRIN2B GRIN2B 140 1.723 0.723 1.000 - - - - - - -
40. dennd1b ENSDARG00000101868 328 1.714 - - - 0.754 - 0.960 - - - DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
41. gbas gbas 735 1.711 - - - 0.801 - 0.910 - - -
42. FAM117B FAM117B 225 1.707 - 1.000 - 0.707 - - - - -
43. MYOF ENSDARG00000006112 436 1.707 0.729 - - - - 0.978 - - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
44. phactr3a ENSDARG00000058243 150 1.683 0.871 - - 0.812 - - - - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
45. setd2 ENSDARG00000062244 808 1.681 - - - 0.730 - 0.951 - - - SET domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2140]
46. gpr143 ENSDARG00000034572 559 1.68 0.770 - - - - 0.910 - - - G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
47. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 1.665 - - - 0.736 - 0.929 - - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
48. CORIN ENSDARG00000101281 654 1.657 - - - 0.847 - 0.810 - - - corin, serine peptidase [Source:ZFIN;Acc:ZDB-GENE-060224-3]
49. nlgn3a ENSDARG00000104786 91 1.653 - 0.740 - 0.913 - - - - - neuroligin 3a [Source:ZFIN;Acc:ZDB-GENE-071219-1]
50. fzd9b ENSDARG00000014673, ENSDARG00000116739 155 1.65 - - - 0.828 0.822 - - - - frizzled class receptor 9b [Source:ZFIN;Acc:ZDB-GENE-000906-4]
51. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.615 0.735 0.880 - - - - - - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
52. si:dkey-157e10.7 si:dkey-157e10.7 105 1.595 - - - 0.890 0.705 - - - -
53. ARMCX3 ARMCX3 328 1.537 - - - 0.729 0.808 - - - -
54. gnai2b ENSDARG00000017294 686 1.516 0.750 - - - - 0.766 - - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]
55. ing1 ENSDARG00000019116 394 1.508 0.723 0.785 - - - - - - - inhibitor of growth family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-4388]
56. si:dkey-251i10.2 ENSDARG00000093957 4424 1.495 0.763 0.732 - - - - - - - si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
57. aaas ENSDARG00000102274 1192 1.492 0.720 - - - 0.772 - - - - achalasia, adrenocortical insufficiency, alacrimia [Source:ZFIN;Acc:ZDB-GENE-030912-4]
58. stk17b ENSDARG00000014348, ENSDARG00000114208 1447 1.471 - - - 0.740 - 0.731 - - - serine/threonine kinase 17b (apoptosis-inducing) [Source:ZFIN;Acc:ZDB-GENE-040426-1499]
59. pde12 ENSDARG00000030964 615 1.467 - - - 0.749 0.718 - - - - phosphodiesterase 12 [Source:ZFIN;Acc:ZDB-GENE-060519-25]
60. cebpg ENSDARG00000036073 3791 1.44 - - - 0.728 - 0.712 - - - CCAAT enhancer binding protein gamma [Source:ZFIN;Acc:ZDB-GENE-020111-5]
61. ERAP1 ERAP1 0 1 - 1.000 - - - - - - -
62. FP236851.1 FP236851.1 10 1 - 1.000 - - - - - - -
63. CR626874.1 ENSDARG00000100141 55 1 - 1.000 - - - - - - -
64. cldnd ENSDARG00000006580 17 1 - 1.000 - - - - - - - claudin d [Source:ZFIN;Acc:ZDB-GENE-010328-4]
65. CU652893.1 ENSDARG00000104131 3 1 - 1.000 - - - - - - -
66. CABZ01081748.1 ENSDARG00000102139 31 1 1.000 - - - - - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
67. si:dkey-178e17.2 1 1 1.000 - - - - - - - - si:dkey-178e17.2, transcript variant X2
68. CR450785.2 ENSDARG00000111875 1 1 1.000 - - - - - - - -
69. lama3 ENSDARG00000071462 1 1 - 1.000 - - - - - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
70. CR848784.2 ENSDARG00000111157 16 1 1.000 - - - - - - - -
71. si:dkey-81p22.11 ENSDARG00000093797 68 1 - 1.000 - - - - - - - si:dkey-81p22.11 [Source:NCBI gene;Acc:100535473]
72. entpd2b ENSDARG00000044795 7 1 - 1.000 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 2b [Source:ZFIN;Acc:ZDB-GENE-061013-2]
73. ODF2 ODF2 6 1 - 1.000 - - - - - - -
74. cradd ENSDARG00000028192 153 1 1.000 - - - - - - - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:ZFIN;Acc:ZDB-GENE-041010-168]
75. CT027800.1 CT027800.1 36 1 - 1.000 - - - - - - -
76. CCDC66 2 1 - 1.000 - - - - - - - coiled-coil domain containing 66
77. si:dkeyp-77c8.1 ENSDARG00000093940 0 1 - 1.000 - - - - - - - si:dkeyp-77c8.1 [Source:ZFIN;Acc:ZDB-GENE-090313-397]
78. RPGRIP1 ENSDARG00000076055 10 1 - 1.000 - - - - - - - RPGR interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-091204-394]
79. tgm2b ENSDARG00000074094 1 1 - 1.000 - - - - - - - transglutaminase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2576]
80. si:dkey-71h2.2 ENSDARG00000043394 11 1 - 1.000 - - - - - - - si:dkey-71h2.2 [Source:ZFIN;Acc:ZDB-GENE-041014-145]
81. fut10 ENSDARG00000100322 22 1 1.000 - - - - - - - - fucosyltransferase 10 [Source:ZFIN;Acc:ZDB-GENE-081022-183]
82. ptpn6 ENSDARG00000089043 168 1 - 1.000 - - - - - - - protein tyrosine phosphatase, non-receptor type 6 [Source:ZFIN;Acc:ZDB-GENE-030131-7513]
83. nid2b ENSDARG00000009471 4 1 - 1.000 - - - - - - - nidogen 2b (osteonidogen) [Source:ZFIN;Acc:ZDB-GENE-040724-143]
84. lsm10 5 1 - 1.000 - - - - - - - LSM10, U7 small nuclear RNA associated
85. arhgef9a ENSDARG00000061746 58 1 - 1.000 - - - - - - - Cdc42 guanine nucleotide exchange factor (GEF) 9a [Source:ZFIN;Acc:ZDB-GENE-070705-271]
86. klc4 ENSDARG00000086985 4 1 - 1.000 - - - - - - - kinesin light chain 4 [Source:ZFIN;Acc:ZDB-GENE-050417-350]
87. trmt2b ENSDARG00000033967 127 1 1.000 - - - - - - - - tRNA methyltransferase 2 homolog B [Source:ZFIN;Acc:ZDB-GENE-050809-101]
88. GLS2 GLS2 10 1 - 1.000 - - - - - - -
89. cyp27a7 ENSDARG00000033802 216 1 - 1.000 - - - - - - - cytochrome P450, family 27, subfamily A, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-081104-519]
90. si:dkey-179k24.3 si:dkey-179k24.3 3 1 1.000 - - - - - - - -
91. si:ch211-120c15.1 si:ch211-120c15.1 20 1 - 1.000 - - - - - - -
92. st6gal1 ENSDARG00000044514 142 1 - 1.000 - - - - - - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
93. FP085391.2 FP085391.2 85 1 1.000 - - - - - - - -
94. sowahca ENSDARG00000098790 1 1 - 1.000 - - - - - - - sosondowah ankyrin repeat domain family Ca [Source:ZFIN;Acc:ZDB-GENE-081104-106]
95. lhx5 ENSDARG00000057936 785 1 - 1.000 - - - - - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
96. si:dkey-19a16.2 ENSDARG00000058794 8 1 - 1.000 - - - - - - - si:dkey-19a16.2 [Source:ZFIN;Acc:ZDB-GENE-050208-493]
97. slc1a9 ENSDARG00000098269 12 1 - 1.000 - - - - - - - solute carrier family 1 (glutamate transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-101111-9]
98. AL935181.2 AL935181.2 9 1 1.000 - - - - - - - -
99. zgc:112234_5 ENSDARG00000099514, ENSDARG00000102806, ENSDARG00000104588, ENSDARG00000105340, ENSDARG00000105393, ENSDARG00000105414, ENSDARG00000105468, ENSDARG00000105483, ENSDARG00000105507, ENSDARG00000111934 6 1 - 1.000 - - - - - - - zgc:112234 [Source:NCBI gene;Acc:554097]
100. gna15.3 ENSDARG00000056654, ENSDARG00000092948 9 1 - 1.000 - - - - - - - guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-050208-700]

There are 1581 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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