Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CHD7

Gene Name Gene ID Reads Annotation
CHD7 ENSGALG00000041080 10201 chromodomain helicase DNA binding protein 7 [Source:NCBI gene;Acc:421140]











Genes with expression patterns similar to CHD7

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CHD7 ENSGALG00000041080 10201 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 7 [Source:NCBI gene;Acc:421140]
2. CDK8 ENSGALG00000017104 5956 1.498 - - - - - - 0.767 - - 0.731 cyclin dependent kinase 8, transcript variant X4
3. PSMB4 ENSGALG00000000905 46735 1.48 - - - - - - 0.753 - - 0.727 proteasome subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:9541]
4. GLRX3 ENSGALG00000010464 22578 1.47 - - - - - - 0.713 - - 0.757 glutaredoxin 3 [Source:NCBI gene;Acc:423968]
5. MICALL1 ENSGALG00000012265 3753 1.468 - - - - - - 0.724 - - 0.744 MICAL like 1 [Source:NCBI gene;Acc:418032]
6. MYCL ENSGALG00000024047 10367 1.467 - - - - - - - - 0.713 0.754 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
7. THUMPD3 ENSGALG00000008394 17711 1.459 - - - - - - 0.716 - - 0.743 THUMP domain containing 3, transcript variant X2
8. ZZZ3 ENSGALG00000008988 3132 1.443 - - - - - - 0.719 - - 0.724 zinc finger ZZ-type containing 3, transcript variant X5
9. CREPT CREPT 17142 0.869 - - - - - - - - - 0.869
10. KDM6A ENSGALG00000016217 2302 0.857 - - - - - - - - - 0.857 lysine demethylase 6A, transcript variant X14
11. PTPN11 ENSGALG00000004821 2658 0.852 - - - - - - - - - 0.852 protein tyrosine phosphatase, non-receptor type 11 [Source:NCBI gene;Acc:395815]
12. FAM96B 14435 0.849 - - - - - - - - - 0.849 family with sequence similarity 96 member B
13. MYST2 MYST2 8078 0.843 - - - - - - - - - 0.843
14. MRPS2 ENSGALG00000026303 12124 0.842 - - - - - - - 0.842 - - mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495]
15. TATDN1 ENSGALG00000041072 1585 0.838 - - - - - - - - - 0.838 TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
16. ZFHX3 ENSGALG00000000713 2340 0.837 - - - - - - - - - 0.837 zinc finger homeobox 3 [Source:NCBI gene;Acc:395682]
17. TCN2 3959 0.836 - - - - - - - - - 0.836 transcobalamin 2
18. OAF ENSGALG00000006715 12518 0.836 - - - - - - 0.836 - - - out at first homolog [Source:NCBI gene;Acc:395161]
19. CAPN15 ENSGALG00000002018 3353 0.835 - - - - - - - - - 0.835 calpain 15 [Source:HGNC Symbol;Acc:HGNC:11182]
20. CEP57 ENSGALG00000017201 524 0.835 - - - - - - - - - 0.835 centrosomal protein 57 [Source:HGNC Symbol;Acc:HGNC:30794]
21. ENSGALG00000024104 ENSGALG00000024104 1051 0.834 - - - - - - - - - 0.834
22. PLCL2 ENSGALG00000011248 162 0.834 - - - - - - - - - 0.834 phospholipase C like 2 [Source:HGNC Symbol;Acc:HGNC:9064]
23. USP10 ENSGALG00000005674 7768 0.834 - - - - - - 0.834 - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
24. LIMK1 ENSGALG00000001076 1931 0.83 - - - - - - - - - 0.830 LIM domain kinase 1 [Source:NCBI gene;Acc:373922]
25. RNF220 ENSGALG00000010109 3114 0.83 - - - - - - - - - 0.830 ring finger protein 220 [Source:NCBI gene;Acc:424580]
26. COL12A1 ENSGALG00000015908 1300 0.829 - - - - - - - - - 0.829 collagen type XII alpha 1 chain [Source:NCBI gene;Acc:395875]
27. IFNAR2 ENSGALG00000041867 1596 0.828 - - - - - - - - - 0.828 interferon alpha and beta receptor subunit 2 [Source:NCBI gene;Acc:395664]
28. PHF2 ENSGALG00000039208 2003 0.828 - - - - - - - - - 0.828 PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
29. ATL1 ENSGALG00000012339 3789 0.828 - - - - - - - - - 0.828 atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
30. WWC1 ENSGALG00000001826 4666 0.827 - - - - - - - - - 0.827 WW and C2 domain containing 1 [Source:NCBI gene;Acc:416167]
31. PKDCCB ENSGALG00000011166 74 0.826 - - - - - - - - - 0.826 protein kinase domain containing, cytoplasmic b
32. ARHGAP11A ENSGALG00000009731 6817 0.824 - - - - - - - - - 0.824 Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
33. ELL2 ENSGALG00000014678 1111 0.824 - - - - - - - - - 0.824 elongation factor for RNA polymerase II 2 [Source:HGNC Symbol;Acc:HGNC:17064]
34. RFWD3 2315 0.823 - - - - - - - - - 0.823 ring finger and WD repeat domain 3
35. CLIP1 ENSGALG00000004467 1058 0.823 - - - - - - - - - 0.823 CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]
36. RPRD2 ENSGALG00000014656 939 0.822 - - - - - - - - - 0.822 regulation of nuclear pre-mRNA domain containing 2 [Source:NCBI gene;Acc:425074]
37. TTI1 ENSGALG00000006791 1218 0.821 - - - - - - - - - 0.821 TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
38. POLE2 ENSGALG00000012237 9023 0.82 - - - - - - - - - 0.820 DNA polymerase epsilon 2, accessory subunit [Source:NCBI gene;Acc:423567]
39. PCMTD2 ENSGALG00000005901 1833 0.82 - - - - - - - - - 0.820 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
40. ENSGALG00000004772 ENSGALG00000004772 173 0.819 - - - - - - - - - 0.819
41. EGLN1 ENSGALG00000041422 11032 0.819 - - - - - - 0.819 - - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
42. SOSTDC1 ENSGALG00000036836 1081 0.817 - - - - - - - - - 0.817 sclerostin domain containing 1 [Source:NCBI gene;Acc:378800]
43. ARIH2 ENSGALG00000006956 3692 0.817 - - - - - - - - - 0.817 ariadne RBR E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:416061]
44. TRIM24 ENSGALG00000012823 2725 0.817 - - - - - - - - - 0.817 tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
45. ZFPM2 ENSGALG00000040079 942 0.817 - - - - - - - - - 0.817 zinc finger protein, FOG family member 2 [Source:HGNC Symbol;Acc:HGNC:16700]
46. ARHGAP19 ENSGALG00000007609 3655 0.816 - - - - - - - - - 0.816 Rho GTPase activating protein 19 [Source:NCBI gene;Acc:423846]
47. STAT5 STAT5 1796 0.816 - - - - - - - - - 0.816
48. SESN1 ENSGALG00000015286 2387 0.816 - - - - - - - - - 0.816 sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]
49. CTK-1 CTK-1 1618 0.816 - - - - - - - - - 0.816
50. DTX2 ENSGALG00000001905 1475 0.816 - - - - - - - - - 0.816 deltex E3 ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:15973]
51. AP3B2 2331 0.816 - - - - - - - - - 0.816 adaptor related protein complex 3 beta 2 subunit, transcript variant X7
52. ZNF609 ENSGALG00000040087 2299 0.815 - - - - - - - - - 0.815 zinc finger protein 609 [Source:NCBI gene;Acc:415331]
53. TMTC2 ENSGALG00000010975 7040 0.815 - - - - - - 0.815 - - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
54. YBX3 ENSGALG00000031890 819 0.815 - - - - - - - - - 0.815 Y-box binding protein 3 [Source:NCBI gene;Acc:396371]
55. MLST8 ENSGALG00000005878 8116 0.815 - - - - - - - - - 0.815 MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
56. C15H12ORF49 C15H12ORF49 13250 0.815 - - - - - - - - - 0.815
57. ANKRA2 ENSGALG00000013511 3460 0.814 - - - - - - - - - 0.814 ankyrin repeat family A member 2 [Source:NCBI gene;Acc:426153]
58. C5orf24 ENSGALG00000006371 1573 0.813 - - - - - - - - - 0.813 chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
59. CTCF 10811 0.813 - - - - - - - - - 0.813 CCCTC-binding factor, transcript variant X2
60. ADAMTS12 55 0.813 - - - - - - - - - 0.813 ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
61. RP9 ENSGALG00000035453 1186 0.813 - - - - - - - - - 0.813 retinitis pigmentosa 9 (autosomal dominant)
62. ENSGALG00000008594 ENSGALG00000008594 54 0.811 - - - - - - - - - 0.811
63. JOSD1 ENSGALG00000041766 1445 0.811 - - - - - - - - - 0.811 Josephin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28953]
64. HDAC4 ENSGALG00000004288 2124 0.811 - - - - - - - - - 0.811 histone deacetylase 4 [Source:NCBI gene;Acc:374207]
65. SERPINB6 ENSGALG00000012866 1582 0.811 - - - - - - - - - 0.811 serpin family B member 6 [Source:NCBI gene;Acc:420895]
66. MAP3K8 ENSGALG00000007356 188 0.81 - - - - - - - - - 0.810 mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
67. CDT1 ENSGALG00000013784 6801 0.81 - - - - - - 0.810 - - - chromatin licensing and DNA replication factor 1 [Source:HGNC Symbol;Acc:HGNC:24576]
68. UBE3C ENSGALG00000006461 57 0.81 - - - - - - - - - 0.810 ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
69. AGMO ENSGALG00000010792 76 0.81 - - - - - - - - - 0.810 alkylglycerol monooxygenase [Source:HGNC Symbol;Acc:HGNC:33784]
70. ZNF142 ENSGALG00000011393 2078 0.81 - - - - - - - - - 0.810 zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
71. SOS2 ENSGALG00000012273 41 0.81 - - - - - - - - - 0.810 SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]
72. PMPCB ENSGALG00000008280 6357 0.809 - - - - - - - - - 0.809 peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
73. NFKBIE ENSGALG00000044525 633 0.809 - - - - - - - - - 0.809 NFKB inhibitor epsilon [Source:HGNC Symbol;Acc:HGNC:7799]
74. CNKSR3 ENSGALG00000027159 41 0.808 - - - - - - - - - 0.808 CNKSR family member 3, transcript variant X2
75. ENSGALG00000018358 ENSGALG00000018358 101 0.808 - - - - - - - - - 0.808
76. TM6SF2 ENSGALG00000029015 109 0.808 - - - - - - - - - 0.808 transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
77. DGKB ENSGALG00000033561 170 0.808 - - - - - - - - - 0.808 diacylglycerol kinase beta [Source:HGNC Symbol;Acc:HGNC:2850]
78. FOXP1 127 0.807 - - - - - - - - - 0.807 forkhead box P1, transcript variant X14
79. TRMT44 ENSGALG00000015594 1490 0.807 - - - - - - - - - 0.807 tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
80. ENSGALG00000004643 ENSGALG00000004643 2297 0.806 - - - - - - - - - 0.806
81. RGP1 ENSGALG00000002394 5937 0.806 - - - - - - - - - 0.806 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
82. HOXA9 ENSGALG00000028983 9298 0.805 - - - - - - - - - 0.805 homeobox A9 [Source:NCBI gene;Acc:396096]
83. PDCD7 ENSGALG00000021027 3807 0.805 - - - - - - - - - 0.805 programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
84. FN3K ENSGALG00000001531 208 0.805 - - - - - - - - - 0.805 fructosamine 3 kinase [Source:HGNC Symbol;Acc:HGNC:24822]
85. MRPL32 ENSGALG00000037258 6861 0.804 - - - - - - - - - 0.804 mitochondrial ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:14035]
86. MTO1 ENSGALG00000015923 4418 0.804 - - - - - - - - - 0.804 mitochondrial tRNA translation optimization 1 [Source:NCBI gene;Acc:772297]
87. MAP3K3 ENSGALG00000000525 115 0.804 - - - - - - - - - 0.804 mitogen-activated protein kinase kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6855]
88. F F 3639 0.804 - - - - - - - - - 0.804
89. TFG ENSGALG00000015299 849 0.804 - - - - - - - - - 0.804 TRK-fused gene [Source:HGNC Symbol;Acc:HGNC:11758]
90. LRP11 ENSGALG00000019987 3341 0.803 - - - - - - - - - 0.803 LDL receptor related protein 11 [Source:HGNC Symbol;Acc:HGNC:16936]
91. PTPRE ENSGALG00000009823 250 0.803 - - - - - - - - - 0.803 protein tyrosine phosphatase, receptor type E [Source:HGNC Symbol;Acc:HGNC:9669]
92. BCOR ENSGALG00000016245 85 0.803 - - - - - - - - - 0.803 BCL6 corepressor, transcript variant X8
93. WDR45B ENSGALG00000001563 5870 0.802 - - - - - - 0.802 - - - WD repeat domain 45B [Source:NCBI gene;Acc:417339]
94. STX6 3297 0.802 - - - - - - - - - 0.802 syntaxin 6
95. SHPK ENSGALG00000004637 2386 0.802 - - - - - - - - - 0.802 sedoheptulokinase, transcript variant X1
96. FTSJ3 ENSGALG00000032993 8929 0.802 - - - - - - - - - 0.802 FtsJ RNA methyltransferase homolog 3 [Source:NCBI gene;Acc:419943]
97. DCK ENSGALG00000028501 8675 0.801 - - - - - - - - - 0.801 deoxycytidine kinase [Source:NCBI gene;Acc:422648]
98. KIF1A ENSGALG00000006221 1989 0.801 - - - - - - - - - 0.801 kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
99. PROCR ENSGALG00000006547 645 0.801 - - - - - - - - - 0.801 protein C receptor [Source:NCBI gene;Acc:424867]
100. USP36 ENSGALG00000037018 783 0.8 - - - - - - - - - 0.800 ubiquitin specific peptidase 36 [Source:HGNC Symbol;Acc:HGNC:20062]

There are 363 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA