Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CHD4

Gene Name Gene ID Reads Annotation
CHD4 ENSGALG00000013565 25695 chromodomain helicase DNA binding protein 4











Genes with expression patterns similar to CHD4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CHD4 ENSGALG00000013565 25695 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 4
2. PDHB ENSGALG00000029576 12254 1.887 - - - - 0.970 - - 0.917 - - pyruvate dehydrogenase (lipoamide) beta [Source:NCBI gene;Acc:416066]
3. TBP ENSGALG00000011171 5759 1.813 - - - - 0.927 - 0.886 - - - TATA-box binding protein [Source:NCBI gene;Acc:395995]
4. DLC1 ENSGALG00000013715 5297 1.764 - - - - - - 0.847 0.917 - - DLC1 Rho GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:2897]
5. STOML2 STOML2 15566 1.764 - - - - 0.930 - 0.834 - - -
6. AIMP1 ENSGALG00000010553 17994 1.763 - - - - 0.920 - 0.843 - - - aminoacyl tRNA synthetase complex interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:HGNC:10648]
7. YAF2 ENSGALG00000009540 8452 1.759 - - - - - - 0.854 0.905 - - YY1 associated factor 2 [Source:NCBI gene;Acc:417790]
8. ITM2A ENSGALG00000004107 29262 1.697 - - - - 0.955 - 0.742 - - - integral membrane protein 2A [Source:NCBI gene;Acc:422145]
9. INPP5A ENSGALG00000010493 6769 1.653 - - - - - - 0.783 0.870 - - inositol polyphosphate-5-phosphatase A [Source:HGNC Symbol;Acc:HGNC:6076]
10. TOP1 ENSGALG00000003681 30214 1.638 - - - - 0.811 - 0.827 - - - DNA topoisomerase I [Source:NCBI gene;Acc:396004]
11. PPA2 ENSGALG00000010582 22301 1.604 - - - - 0.748 - - 0.856 - - pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]
12. SON ENSGALG00000035096 8654 1.543 - - 0.705 - - - 0.838 - - - SON DNA binding protein, transcript variant X4
13. ATP5H 53898 1.48 - - - - 0.741 - 0.739 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit D, transcript variant X2
14. ROCK1 ENSGALG00000014922 4020 0.969 - - - - 0.969 - - - - - Rho-associated, coiled-coil containing protein kinase 1 [Source:NCBI gene;Acc:373970]
15. SMC6 ENSGALG00000016467 3321 0.968 - - - - 0.968 - - - - - Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
16. REXO5 ENSGALG00000002239 2466 0.968 - - - - 0.968 - - - - - RNA exonuclease 5 [Source:NCBI gene;Acc:427001]
17. KLF3 ENSGALG00000041717 2787 0.967 - - - - 0.967 - - - - - Kruppel like factor 3 [Source:HGNC Symbol;Acc:HGNC:16516]
18. THUMPD3 ENSGALG00000008394 17711 0.967 - - - - 0.967 - - - - - THUMP domain containing 3, transcript variant X2
19. AP1S3 ENSGALG00000005171 2981 0.967 - - - - 0.967 - - - - - adaptor related protein complex 1 subunit sigma 3 [Source:NCBI gene;Acc:424807]
20. IFT172 ENSGALG00000016509 1226 0.967 - - - - 0.967 - - - - - intraflagellar transport 172 [Source:HGNC Symbol;Acc:HGNC:30391]
21. TMEM203 ENSGALG00000008925 3033 0.967 - - - - 0.967 - - - - - transmembrane protein 203 [Source:HGNC Symbol;Acc:HGNC:28217]
22. COQ3 ENSGALG00000015486 3508 0.967 - - - - 0.967 - - - - - coenzyme Q3, methyltransferase [Source:HGNC Symbol;Acc:HGNC:18175]
23. FZD6 ENSGALG00000030626 3336 0.967 - - - - 0.967 - - - - - frizzled class receptor 6 [Source:NCBI gene;Acc:378788]
24. MDFIC ENSGALG00000026838 3881 0.966 - - - - 0.966 - - - - - MyoD family inhibitor domain containing [Source:HGNC Symbol;Acc:HGNC:28870]
25. ATAD5 ENSGALG00000003294 4830 0.966 - - - - 0.966 - - - - - ATPase family, AAA domain containing 5 [Source:NCBI gene;Acc:417408]
26. PRKCD ENSGALG00000002016 1476 0.966 - - - - 0.966 - - - - - protein kinase C delta [Source:NCBI gene;Acc:415905]
27. CRCP ENSGALG00000002587 8809 0.966 - - - - 0.966 - - - - - CGRP receptor component [Source:NCBI gene;Acc:396022]
28. IL4RA IL4RA 1237 0.966 - - - - 0.966 - - - - -
29. TCERG1L ENSGALG00000010470 490 0.966 - - - - 0.966 - - - - - transcription elongation regulator 1 like [Source:HGNC Symbol;Acc:HGNC:23533]
30. Sep-11 Sep-11 2005 0.966 - - - - 0.966 - - - - -
31. MICALL1 ENSGALG00000012265 3753 0.966 - - - - 0.966 - - - - - MICAL like 1 [Source:NCBI gene;Acc:418032]
32. TMEM184C ENSGALG00000010019 7856 0.965 - - - - 0.965 - - - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
33. ZNF318 ENSGALG00000034040 1758 0.965 - - - - 0.965 - - - - - zinc finger protein 318 [Source:HGNC Symbol;Acc:HGNC:13578]
34. ERICH1 ENSGALG00000031021 1495 0.965 - - - - 0.965 - - - - - glutamate rich 1 [Source:NCBI gene;Acc:421904]
35. COG6 ENSGALG00000017035 2777 0.965 - - - - 0.965 - - - - - component of oligomeric golgi complex 6 [Source:HGNC Symbol;Acc:HGNC:18621]
36. DNAJA1 ENSGALG00000023066 3820 0.964 - - - - 0.964 - - - - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
37. RNF207 2949 0.964 - - - - 0.964 - - - - - ring finger protein 207, transcript variant X1
38. ITPA ENSGALG00000003250 7722 0.964 - - - - 0.964 - - - - - inosine triphosphatase [Source:NCBI gene;Acc:424390]
39. DAP3 ENSGALG00000019796 13278 0.964 - - - - 0.964 - - - - - death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]
40. ZBTB8OS ENSGALG00000003517 2436 0.964 - - - - 0.964 - - - - - zinc finger and BTB domain containing 8 opposite strand [Source:HGNC Symbol;Acc:HGNC:24094]
41. FANCM ENSGALG00000031182 1030 0.963 - - - - 0.963 - - - - - FA complementation group M [Source:HGNC Symbol;Acc:HGNC:23168]
42. ATP5J 14451 0.963 - - - - 0.963 - - - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6, transcript variant X2
43. VCPKMT ENSGALG00000012269 2107 0.963 - - - - 0.963 - - - - - valosin containing protein lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:20352]
44. METTL25 1538 0.963 - - - - 0.963 - - - - - methyltransferase like 25, transcript variant X1
45. CALCA CALCA 682 0.963 - - - - 0.963 - - - - -
46. RAB23 ENSGALG00000016279 597 0.962 - - - - 0.962 - - - - - ras-related protein Rab-23 [Source:NCBI gene;Acc:421879]
47. GLI2 ENSGALG00000011630 3347 0.962 - - - - 0.962 - - - - - GLI family zinc finger 2 [Source:NCBI gene;Acc:395956]
48. DRD2 ENSGALG00000007794 399 0.962 - - - - 0.962 - - - - - dopamine receptor D2 [Source:NCBI gene;Acc:428252]
49. LOC770492 ENSGALG00000027778 695 0.962 - - - - 0.962 - - - - - ras-related and estrogen-regulated growth inhibitor-like
50. ALDH18A1 ENSGALG00000034655 3038 0.962 - - - - 0.962 - - - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
51. BBS2 ENSGALG00000042415 1816 0.961 - - - - 0.961 - - - - - Bardet-Biedl syndrome 2 [Source:NCBI gene;Acc:415694]
52. RASA2 ENSGALG00000002850 2231 0.961 - - - - 0.961 - - - - - RAS p21 protein activator 2 [Source:NCBI gene;Acc:424782]
53. TEL TEL 1231 0.961 - - - - 0.961 - - - - -
54. TMX4 ENSGALG00000028587 3513 0.961 - - - - 0.961 - - - - - thioredoxin related transmembrane protein 4 [Source:NCBI gene;Acc:416729]
55. CGT CGT 948 0.96 - - - - 0.960 - - - - -
56. GALNTL4 GALNTL4 3548 0.96 - - - - 0.960 - - - - -
57. SLC25A15 ENSGALG00000017032 6773 0.96 - - - - 0.960 - - - - - solute carrier family 25 member 15 [Source:NCBI gene;Acc:418886]
58. OGFOD3 ENSGALG00000001618 2438 0.96 - - - - 0.960 - - - - - 2-oxoglutarate and iron dependent oxygenase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26174]
59. ADPGK ENSGALG00000001788 208 0.959 - - - - 0.959 - - - - - ADP dependent glucokinase [Source:NCBI gene;Acc:415317]
60. NQO2 ENSGALG00000025747 2287 0.959 - - - - 0.959 - - - - - N-ribosyldihydronicotinamide:quinone reductase 2 [Source:HGNC Symbol;Acc:HGNC:7856]
61. DLGAP5 ENSGALG00000012165 2406 0.958 - - - - 0.958 - - - - - DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]
62. MYBBP1A ENSGALG00000001363 10331 0.958 - - - - 0.958 - - - - - MYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]
63. TMEM97 ENSGALG00000005702 2037 0.957 - - - - 0.957 - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
64. LYN ENSGALG00000042321 3539 0.957 - - - - 0.957 - - - - - LYN proto-oncogene, Src family tyrosine kinase [Source:NCBI gene;Acc:421127]
65. ARPP21 ENSGALG00000043240 2403 0.957 - - - - 0.957 - - - - - cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]
66. PEX2 ENSGALG00000035752 4427 0.957 - - - - 0.957 - - - - - peroxisomal biogenesis factor 2 [Source:NCBI gene;Acc:420192]
67. TP53INP1 ENSGALG00000041353 6890 0.957 - - - - 0.957 - - - - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
68. RPAP3 ENSGALG00000009743 3380 0.956 - - - - 0.956 - - - - - RNA polymerase II associated protein 3 [Source:NCBI gene;Acc:417811]
69. DCAF12 ENSGALG00000005800 6419 0.956 - - - - 0.956 - - - - - DDB1 and CUL4 associated factor 12 [Source:NCBI gene;Acc:427396]
70. DHX33 ENSGALG00000001630 7783 0.956 - - - - 0.956 - - - - - DEAH-box helicase 33 [Source:HGNC Symbol;Acc:HGNC:16718]
71. TAF13 ENSGALG00000015185 11410 0.956 - - - - 0.956 - - - - - TATA-box binding protein associated factor 13 [Source:NCBI gene;Acc:418365]
72. SPSB1 ENSGALG00000002506 2205 0.955 - - - - 0.955 - - - - - splA/ryanodine receptor domain and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:30628]
73. PLS3 ENSGALG00000005930 12625 0.955 - - - - 0.955 - - - - - plastin 3 [Source:NCBI gene;Acc:422222]
74. ALDH4A1 ENSGALG00000042184 9432 0.955 - - - - 0.955 - - - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
75. CCDC58 ENSGALG00000014413 9022 0.955 - - - - 0.955 - - - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
76. EXOSC3 ENSGALG00000002426 7255 0.954 - - - - 0.954 - - - - - exosome component 3 [Source:NCBI gene;Acc:423626]
77. LARP7 ENSGALG00000012048 8393 0.954 - - - - 0.954 - - - - - La ribonucleoprotein domain family member 7 [Source:HGNC Symbol;Acc:HGNC:24912]
78. ZZZ3 ENSGALG00000008988 3132 0.953 - - - - 0.953 - - - - - zinc finger ZZ-type containing 3, transcript variant X5
79. DNAJC25 ENSGALG00000015684 4554 0.953 - - - - 0.953 - - - - - DnaJ heat shock protein family (Hsp40) member C25
80. MRPL54 ENSGALG00000027611 39450 0.952 - - - - - - - 0.952 - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
81. MAPKAPK2 ENSGALG00000000883 6174 0.952 - - - - 0.952 - - - - - mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
82. PLA2G12A ENSGALG00000012185 5261 0.952 - - - - 0.952 - - - - - phospholipase A2 group XIIA [Source:HGNC Symbol;Acc:HGNC:18554]
83. SEC22B ENSGALG00000039704 16080 0.952 - - - - 0.952 - - - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
84. H2AFY_1 ENSGALG00000040141 4895 0.951 - - - - 0.951 - - - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
85. NUP188 ENSGALG00000043394 9288 0.951 - - - - 0.951 - - - - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
86. TIMM10 ENSGALG00000004845 31395 0.95 - - - - 0.950 - - - - - translocase of inner mitochondrial membrane 10 [Source:NCBI gene;Acc:425202]
87. SLC25A24 ENSGALG00000001938 3671 0.949 - - - - 0.949 - - - - - solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
88. MPRIP ENSGALG00000004798 6700 0.949 - - - - 0.949 - - - - - myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
89. NDUFA4 ENSGALG00000025999 53323 0.948 - - - - 0.948 - - - - - NDUFA4, mitochondrial complex associated [Source:NCBI gene;Acc:772135]
90. TXNDC11 ENSGALG00000003154 2224 0.948 - - - - 0.948 - - - - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
91. THOC1 ENSGALG00000014915 5846 0.948 - - - - 0.948 - - - - - Gallus gallus THO complex 1 (THOC1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001321610]
92. TTC37 ENSGALG00000014670 5715 0.947 - - - - 0.947 - - - - - tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]
93. KIAA1524 ENSGALG00000015360 3527 0.946 - - - - 0.946 - - - - - KIAA1524 [Source:NCBI gene;Acc:418410]
94. ROMO1 ENSGALG00000027416 9560 0.946 - - - - 0.946 - - - - - reactive oxygen species modulator 1 [Source:NCBI gene;Acc:768833]
95. PWP1 ENSGALG00000012631 10536 0.946 - - - - 0.946 - - - - - PWP1 homolog, endonuclein [Source:NCBI gene;Acc:418066]
96. HMGN1 ENSGALG00000016067 17375 0.946 - - - - 0.946 - - - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
97. ZWILCH ENSGALG00000007736 4939 0.945 - - - - 0.945 - - - - - zwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]
98. C19orf70 ENSGALG00000026847 19315 0.945 - - - - 0.945 - - - - - chromosome 19 open reading frame 70 [Source:HGNC Symbol;Acc:HGNC:33702]
99. ATPAF1 ENSGALG00000010444 3677 0.943 - - - - 0.943 - - - - - ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18803]
100. POLR1B ENSGALG00000032273 3845 0.943 - - - - 0.943 - - - - - RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]

There are 377 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA