Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CHD1

Gene Name Gene ID Reads Annotation
CHD1 ENSDARG00000103787 1645 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]










Genes with expression patterns similar to CHD1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. CHD1 ENSDARG00000103787 1645 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
2. u2af2b ENSDARG00000011740 6946 3.159 - - 0.772 - - - 0.735 0.781 0.871 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
3. rerea ENSDARG00000077353 4162 2.507 - 0.989 - - - - - 0.732 0.786 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
4. SPIN4_1 SPIN4_1 2562 2.344 - - 0.713 0.704 - - - - 0.927
5. zgc:113348 ENSDARG00000103795 1351 2.326 - - - - - 0.721 - 0.717 0.888 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
6. rbbp6 ENSDARG00000037919 4813 2.302 - 0.799 0.706 - - - - - 0.797 retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5]
7. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 2.284 - - 0.735 0.799 - - - - 0.750 chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
8. prr12a ENSDARG00000074229 1668 1.89 - 0.995 - - - - - - 0.895 proline rich 12a [Source:ZFIN;Acc:ZDB-GENE-041111-223]
9. cnot3b ENSDARG00000019842 838 1.886 - 0.993 - - - - - - 0.893 CCR4-NOT transcription complex, subunit 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5838]
10. larp1 ENSDARG00000101722 976 1.875 - 0.990 - - - - - - 0.885 La ribonucleoprotein domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5386]
11. tox4 tox4 1671 1.873 - 0.995 - - - - - - 0.878
12. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.87 - 0.993 - - - - - - 0.877 netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
13. eya3 ENSDARG00000036100 1965 1.859 - 0.991 - - - - - - 0.868 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
14. tsc22d1 ENSDARG00000038306 2413 1.851 - 0.992 - - - - - - 0.859 TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
15. aqr ENSDARG00000016775 1581 1.836 - 0.984 - - - - - - 0.852 aquarius intron-binding spliceosomal factor [Source:ZFIN;Acc:ZDB-GENE-040426-1189]
16. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 1.821 - 0.988 0.833 - - - - - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
17. KLF8 ENSDARG00000060661 219 1.817 - 0.994 - - - - - - 0.823 Kruppel-like factor 8 [Source:ZFIN;Acc:ZDB-GENE-070424-152]
18. tpst1 ENSDARG00000073872 2490 1.814 - 0.989 - - - - - - 0.825 tyrosylprotein sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-000210-10]
19. ankhd1 ENSDARG00000077860 5510 1.806 - 0.949 - - - - - - 0.857 ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
20. spag7 ENSDARG00000011555 3224 1.785 - 0.980 - - - 0.805 - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
21. PSIP1 PSIP1 5252 1.776 - 0.971 - - - - - - 0.805
22. si:ch211-121a2.2 ENSDARG00000039682 1240 1.744 - 0.981 - - - - 0.763 - - si:ch211-121a2.2 [Source:ZFIN;Acc:ZDB-GENE-070705-21]
23. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.725 - 0.926 - - - - - - 0.799 translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
24. si:dkey-238c7.12 si:dkey-238c7.12 6600 1.703 - 0.945 - 0.758 - - - - -
25. ptpn9a ENSDARG00000077495 2295 1.7 - 0.995 - - - - 0.705 - - protein tyrosine phosphatase, non-receptor type 9, a [Source:ZFIN;Acc:ZDB-GENE-101027-1]
26. ptpn4b ENSDARG00000000183 425 1.694 - 0.993 - - - 0.701 - - - protein tyrosine phosphatase, non-receptor type 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]
27. wdr5 ENSDARG00000016903 4834 1.693 - 0.976 0.717 - - - - - - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
28. klf11a ENSDARG00000030844 3972 1.658 - 0.919 - - - - - - 0.739 Kruppel-like factor 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3568]
29. ftsjd2 ftsjd2 2694 1.648 - - - - - - 0.787 - 0.861
30. sumo3b ENSDARG00000035993 3414 1.639 - - 0.726 - - - - - 0.913 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
31. TAF2 ENSDARG00000102307 1401 1.638 - - - - - - - 0.777 0.861 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
32. hnrnpk ENSDARG00000018914 8841 1.637 - 0.901 - - - - - 0.736 - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
33. plagx ENSDARG00000036855 3768 1.634 - - 0.784 - - - - - 0.850 pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
34. TNPO2 ENSDARG00000042887 2290 1.618 - - 0.712 - - - - - 0.906 transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
35. CABZ01059390.1 CABZ01059390.1 4340 1.61 - 0.877 - - - - - - 0.733
36. cwc25 ENSDARG00000003382 2134 1.608 - - - - 0.703 - - - 0.905 CWC25 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-2817]
37. ZNF462 ENSDARG00000112909 1132 1.606 - - - - - 0.719 - - 0.887 zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
38. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 1.602 - - - - - - - 0.750 0.852 zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
39. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.595 - - 0.727 - - - - - 0.868 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
40. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.593 - - 0.742 - - - - - 0.851 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
41. tox3 ENSDARG00000073957 3075 1.578 - - - - - - - 0.706 0.872 TOX high mobility group box family member 3 [Source:ZFIN;Acc:ZDB-GENE-090312-209]
42. morc2 ENSDARG00000028539 3259 1.577 - - 0.756 - - - - - 0.821 MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]
43. si:ch211-288g17.3 ENSDARG00000070959 2425 1.575 - - 0.762 - - - - - 0.813 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
44. srek1ip1 ENSDARG00000043728 985 1.572 - - - - - - - 0.703 0.869 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
45. stard8 ENSDARG00000014003, ENSDARG00000114410 1237 1.571 - - - - - - 0.766 - 0.805 StAR-related lipid transfer (START) domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030131-9447]
46. dpf3 ENSDARG00000025309 1376 1.571 - - - - - - - 0.702 0.869 D4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]
47. FOXO4 ENSDARG00000055792 1457 1.566 - - - - - - - 0.780 0.786 forkhead box O4 [Source:ZFIN;Acc:ZDB-GENE-150311-1]
48. npas3b npas3b 1446 1.566 - - 0.738 - - - - - 0.828
49. ctnnb1 ENSDARG00000014571 12004 1.562 - - 0.840 - - - - 0.722 - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
50. snrnp70 ENSDARG00000077126 5921 1.56 - - 0.748 - - - - - 0.812 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
51. CHL1 CHL1 1553 1.558 - - 0.717 - - - - - 0.841
52. CABZ01028296.1 CABZ01028296.1 6203 1.557 - - - - - - 0.740 - 0.817
53. klhdc10 ENSDARG00000007764 529 1.556 - - - - - - 0.737 - 0.819 kelch domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-776]
54. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.547 - - 0.829 - - - 0.718 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
55. ebf3 ebf3 4238 1.541 - - 0.705 - - - - - 0.836
56. ylpm1 ENSDARG00000043680 7676 1.539 - - 0.784 - - 0.755 - - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
57. otub1b ENSDARG00000011462 4329 1.536 - - - - - - - 0.711 0.825 OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
58. bcor ENSDARG00000017798 1719 1.535 - - 0.767 - - - - - 0.768 BCL6 corepressor [Source:ZFIN;Acc:ZDB-GENE-040408-1]
59. cspg5a ENSDARG00000069981 1699 1.534 - - 0.709 - - - - - 0.825 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
60. AOC3 AOC3 590 1.527 - - - - - 0.740 - - 0.787
61. mta2 ENSDARG00000013031 2932 1.526 - - - - - - - 0.771 0.755 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
62. eml3 ENSDARG00000058038 449 1.524 0.702 - - - - - - - 0.822 echinoderm microtubule associated protein like 3 [Source:ZFIN;Acc:ZDB-GENE-110304-3]
63. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 1.518 - - - 0.712 - - - - 0.806 LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
64. TAF15 ENSDARG00000070019 5102 1.515 - - 0.751 - - - - 0.764 - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
65. p4hb ENSDARG00000105116, ENSDARG00000116847 6885 1.513 - 0.715 - - - - - - 0.798 prolyl 4-hydroxylase, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-080610-1]
66. hdac1 ENSDARG00000015427 19804 1.513 - 0.787 0.726 - - - - - - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
67. sin3b ENSDARG00000062472 2025 1.512 - - 0.739 0.773 - - - - - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
68. pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 1.511 - - 0.747 0.764 - - - - - PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
69. arhgef2 ENSDARG00000075819 2173 1.51 - - - 0.749 - - - 0.761 - rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030717-1]
70. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.508 - - 0.746 - - - - - 0.762 nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
71. top2b ENSDARG00000034195 3715 1.501 - - 0.737 0.764 - - - - - DNA topoisomerase II beta [Source:ZFIN;Acc:ZDB-GENE-041008-136]
72. mab21l1 ENSDARG00000102047 4665 1.496 - - 0.772 0.724 - - - - - mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
73. CABZ01111990.1 CABZ01111990.1 4374 1.494 - - - - - - - 0.708 0.786
74. slbp ENSDARG00000100558 3405 1.493 - - 0.752 - - - - - 0.741 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
75. polr2a ENSDARG00000099966 5706 1.49 - - 0.737 0.753 - - - - - polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78]
76. kdm5c ENSDARG00000006124 4389 1.483 - - - - - - - 0.700 0.783 lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
77. vdac1 ENSDARG00000045132 8051 1.478 - - - - - - 0.709 - 0.769 voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
78. phf20b ENSDARG00000038737, ENSDARG00000111662, ENSDARG00000116554 1385 1.474 - - 0.725 - - - - 0.749 - PHD finger protein 20, b [Source:ZFIN;Acc:ZDB-GENE-040822-33]
79. BX294110.1 ENSDARG00000096875 1761 1.466 - - - - - - 0.712 0.754 -
80. psmd1 ENSDARG00000003189 4373 1.462 - - 0.745 - - - - - 0.717 proteasome 26S subunit, non-ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-810]
81. ubr5 ENSDARG00000018192 9267 1.458 - - 0.733 - - - - 0.725 - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
82. u2af2a ENSDARG00000012505 2920 1.458 - - 0.709 - - - - 0.749 - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
83. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.457 - - 0.723 - - - - 0.734 - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
84. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.452 - - 0.736 0.716 - - - - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
85. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.444 - - 0.741 0.703 - - - - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
86. ghitm 1443 1.444 - - - - - - 0.731 - 0.713 growth hormone inducible transmembrane protein
87. sirt1 ENSDARG00000068064 1393 0.997 - 0.997 - - - - - - - sirtuin 1 [Source:ZFIN;Acc:ZDB-GENE-070801-2]
88. appl1 1019 0.997 - 0.997 - - - - - - - adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1, transcript variant X1
89. tpi1a ENSDARG00000025012 562 0.996 - 0.996 - - - - - - - triosephosphate isomerase 1a [Source:ZFIN;Acc:ZDB-GENE-020416-3]
90. polr1e ENSDARG00000006434, ENSDARG00000113920 770 0.996 - 0.996 - - - - - - - RNA polymerase I subunit E [Source:ZFIN;Acc:ZDB-GENE-050522-251]
91. dhrs9 ENSDARG00000019260 250 0.996 - 0.996 - - - - - - - dehydrogenase/reductase (SDR family) member 9 [Source:ZFIN;Acc:ZDB-GENE-030131-1249]
92. scg3 ENSDARG00000086288, ENSDARG00000115955 1587 0.996 - 0.996 - - - - - - - secretogranin III [Source:ZFIN;Acc:ZDB-GENE-040426-1725]
93. RCSD1 RCSD1 144 0.995 - 0.995 - - - - - - -
94. ube2e2 ENSDARG00000034670 5918 0.995 - 0.995 - - - - - - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
95. pip4k2aa ENSDARG00000003776 865 0.995 - 0.995 - - - - - - - phosphatidylinositol-5-phosphate 4-kinase, type II, alpha a [Source:ZFIN;Acc:ZDB-GENE-080721-18]
96. ubn2 ubn2 534 0.995 - 0.995 - - - - - - -
97. ptk6a ENSDARG00000017947 682 0.995 - 0.995 - - - - - - - PTK6 protein tyrosine kinase 6a [Source:ZFIN;Acc:ZDB-GENE-081105-117]
98. fosl2 ENSDARG00000040623 2041 0.995 - 0.995 - - - - - - - fos-like antigen 2 [Source:ZFIN;Acc:ZDB-GENE-070209-164]
99. SETDB2 ENSDARG00000101462 249 0.995 - 0.995 - - - - - - - SET domain, bifurcated 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7093]
100. THSD1 ENSDARG00000075273, ENSDARG00000112294 228 0.995 - 0.995 - - - - - - - thrombospondin, type I, domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100105-3]

There are 1221 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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