Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CDX1

Gene Name Gene ID Reads Annotation
CDX1 ENSGALG00000005679 461 caudal type homeobox 1 [Source:NCBI gene;Acc:395397]











Genes with expression patterns similar to CDX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CDX1 ENSGALG00000005679 461 6 - 1.000 - - 1.000 1.000 1.000 1.000 - 1.000 caudal type homeobox 1 [Source:NCBI gene;Acc:395397]
2. C14orf79 C14orf79 401 2.298 - - - - - - 0.781 0.786 - 0.731
3. BAAT ENSGALG00000040619 579 1.595 - - - - - - 0.780 0.815 - - bile acid-CoA:amino acid N-acyltransferase [Source:HGNC Symbol;Acc:HGNC:932]
4. MAPRE2 ENSGALG00000015215 58 1.549 - - - - 0.803 - - - - 0.746 microtubule associated protein RP/EB family member 2 [Source:NCBI gene;Acc:421105]
5. NTNG2 ENSGALG00000003677 73 1.521 - - - - - - - 0.718 - 0.803 netrin G2 [Source:HGNC Symbol;Acc:HGNC:14288]
6. ENSGALG00000023557 ENSGALG00000023557 1 1 - - - - 1.000 - - - - -
7. FAM46C 13 1 - - - - 1.000 - - - - - family with sequence similarity 46 member C
8. DENND4C ENSGALG00000015083 25 1 - - - - 1.000 - - - - - DENN domain containing 4C [Source:HGNC Symbol;Acc:HGNC:26079]
9. PEX5 ENSGALG00000014683 17 1 - - - - 1.000 - - - - - peroxisomal biogenesis factor 5 [Source:NCBI gene;Acc:418299]
10. HMX1 ENSGALG00000042062 193 1 - - - - 1.000 - - - - - H6 family homeobox 1 [Source:NCBI gene;Acc:396546]
11. SLC2A9L ENSGALG00000007803 1 1 - - - - 1.000 - - - - - solute carrier family 2, facilitated glucose transporter member 9-like
12. CXorf57 ENSGALG00000008990 31 1 - - - - 1.000 - - - - - chromosome X open reading frame 57 [Source:HGNC Symbol;Acc:HGNC:25486]
13. TOMM34 ENSGALG00000004110 119 1 - - - - 1.000 - - - - - translocase of outer mitochondrial membrane 34
14. ENSGALG00000020593 ENSGALG00000020593 1 1 - - - - 1.000 - - - - -
15. ENSGALG00000023735 ENSGALG00000023735 12 1 - - - - 1.000 - - - - -
16. MOCS1 ENSGALG00000010051 70 1 - - - - 1.000 - - - - - molybdenum cofactor synthesis 1 [Source:HGNC Symbol;Acc:HGNC:7190]
17. IKBIP ENSGALG00000026284 31 1 - - - - 1.000 - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
18. SPAG8 2 1 - - - - 1.000 - - - - - sperm associated antigen 8, transcript variant X3
19. TMEM52B ENSGALG00000034698 169 0.992 - - - - - - 0.992 - - - transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
20. PGM3 ENSGALG00000015854 5 0.949 - - - - - - - - - 0.949 phosphoglucomutase 3 [Source:HGNC Symbol;Acc:HGNC:8907]
21. OTC ENSGALG00000016254 6 0.948 - - - - - - 0.948 - - - ornithine carbamoyltransferase [Source:NCBI gene;Acc:395735]
22. B3GAT1L ENSGALG00000015075 2 0.948 - - - - - - 0.948 - - - beta-1,3-glucuronyltransferase 1-like [Source:NCBI gene;Acc:408180]
23. ENTPD2 ENSGALG00000039696 3 0.948 - - - - - - 0.948 - - - ectonucleoside triphosphate diphosphohydrolase 2 [Source:NCBI gene;Acc:395797]
24. ENSGALG00000012780 ENSGALG00000012780 10 0.948 - - - - - - 0.948 - - -
25. QRSL1 ENSGALG00000015338 16 0.948 - - - - - - 0.948 - - - QRSL1, glutaminyl-tRNA amidotransferase subunit A [Source:HGNC Symbol;Acc:HGNC:21020]
26. ST3GAL2 ENSGALG00000002651 20 0.948 - - - - - - 0.948 - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Source:NCBI gene;Acc:395139]
27. ENSGALG00000024266 ENSGALG00000024266 5 0.948 - - - - - - 0.948 - - -
28. LOC415324 ENSGALG00000002097 17 0.948 - - - - - - 0.948 - - - epididymal protein-like, transcript variant X16
29. URB2 ENSGALG00000011101 12 0.948 - - - - - - 0.948 - - - URB2 ribosome biogenesis 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:28967]
30. PIK3C3 ENSGALG00000035773 52 0.948 - - - - - - 0.948 - - - phosphatidylinositol 3-kinase catalytic subunit type 3 [Source:HGNC Symbol;Acc:HGNC:8974]
31. ENSGALG00000023791 ENSGALG00000023791 3 0.948 - - - - - - 0.948 - - -
32. NEK8 ENSGALG00000003979 4 0.948 - - - - - - 0.948 - - - NIMA related kinase 8 [Source:HGNC Symbol;Acc:HGNC:13387]
33. ENSGALG00000026204 ENSGALG00000026204 2 0.948 - - - - - - 0.948 - - -
34. OLFML1 ENSGALG00000027184 19 0.948 - - - - - - 0.948 - - - olfactomedin like 1 [Source:HGNC Symbol;Acc:HGNC:24473]
35. OVST_1 ENSGALG00000011930 9 0.948 - - - - - - 0.948 - - - ovostatin [Source:NCBI gene;Acc:396151]
36. ENSGALG00000000099 ENSGALG00000000099 16 0.948 - - - - - - 0.948 - - -
37. LHX4 ENSGALG00000036587 14 0.948 - - - - - - 0.948 - - - LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:21734]
38. PSKH1 5 0.948 - - - - - - 0.948 - - - protein serine kinase H1, transcript variant X1
39. RUNX3 ENSGALG00000043372 43 0.948 - - - - - - 0.948 - - - runt related transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:10473]
40. TMCO4 ENSGALG00000004081 31 0.948 - - - - - - 0.948 - - - transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]
41. GALNT11 ENSGALG00000006233 210 0.948 - - - - - - 0.948 - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
42. WIPF2 ENSGALG00000037633 178 0.948 - - - - - - 0.948 - - - WAS/WASL interacting protein family member 2 [Source:HGNC Symbol;Acc:HGNC:30923]
43. MYRF ENSGALG00000041253 13 0.948 - - - - - - 0.948 - - - myelin regulatory factor [Source:HGNC Symbol;Acc:HGNC:1181]
44. BTBD3 ENSGALG00000009028 45 0.948 - - - - - - 0.948 - - - BTB domain containing 3 [Source:HGNC Symbol;Acc:HGNC:15854]
45. DCLK3 ENSGALG00000034493 50 0.948 - - - - - - 0.948 - - - doublecortin like kinase 3 [Source:HGNC Symbol;Acc:HGNC:19005]
46. SLC44A3 ENSGALG00000005610 18 0.948 - - - - - - 0.948 - - - solute carrier family 44 member 3 [Source:HGNC Symbol;Acc:HGNC:28689]
47. MYH7 ENSGALG00000035594 188 0.948 - - - - - - 0.948 - - - myosin, heavy chain 7, cardiac muscle, beta [Source:NCBI gene;Acc:395350]
48. EZR ENSGALG00000013742 68 0.947 - - - - 0.947 - - - - - ezrin [Source:NCBI gene;Acc:395701]
49. GPRC5B ENSGALG00000002028 28 0.914 - - - - 0.914 - - - - - G protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]
50. CELF2 ENSGALG00000034590 31 0.912 - - - - - - 0.912 - - - CUGBP Elav-like family member 2 [Source:NCBI gene;Acc:374111]
51. CHRM4 ENSGALG00000008365 1 0.911 - - - - - - - - - 0.911 Gallus gallus cholinergic receptor muscarinic 4 (CHRM4), mRNA. [Source:RefSeq mRNA;Acc:NM_001031191]
52. P2RX3 ENSGALG00000040479 5 0.911 - - - - - - - - - 0.911 Gallus gallus purinergic receptor P2X 3 (P2RX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001329216]
53. FLI1 ENSGALG00000001161 2 0.911 - - - - - - - - - 0.911 Fli-1 proto-oncogene, ETS transcription factor [Source:NCBI gene;Acc:419723]
54. SERHL2 ENSGALG00000011867 2 0.911 - - - - - - - - - 0.911 serine hydrolase like 2 [Source:NCBI gene;Acc:417976]
55. ENSGALG00000012928 ENSGALG00000012928 2 0.911 - - - - - - - - - 0.911
56. ENSGALG00000006152 ENSGALG00000006152 2 0.911 - - - - - - - - - 0.911
57. HFM1 ENSGALG00000006091 5 0.911 - - - - - - - - - 0.911 HFM1, ATP dependent DNA helicase homolog [Source:HGNC Symbol;Acc:HGNC:20193]
58. IL5RA ENSGALG00000008267 7 0.911 - - - - - - - - - 0.911 interleukin 5 receptor subunit alpha [Source:NCBI gene;Acc:771801]
59. EEF1AKMT4 ENSGALG00000026332 1 0.911 - - - - - - - - - 0.911 EEF1A lysine methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:53611]
60. SIK2 ENSGALG00000036873 7 0.911 - - - - - - - - - 0.911 salt inducible kinase 2 [Source:HGNC Symbol;Acc:HGNC:21680]
61. PPP4R1L 15 0.911 - - - - - - - - - 0.911 protein phosphatase 4, regulatory subunit 1-like, transcript variant X2
62. FGL2 ENSGALG00000008306 15 0.911 - - - - - - - - - 0.911 fibrinogen like 2 [Source:NCBI gene;Acc:768821]
63. ENSGALG00000028322 ENSGALG00000028322 19 0.911 - - - - - - - - - 0.911
64. CBS ENSGALG00000016196 8 0.911 - - - - - - - - - 0.911 cystathionine-beta-synthase, transcript variant X3
65. EPB41L5 ENSGALG00000011605 18 0.911 - - - - - - - - - 0.911 erythrocyte membrane protein band 4.1 like 5 [Source:HGNC Symbol;Acc:HGNC:19819]
66. CPO ENSGALG00000008516 3 0.911 - - - - - - - - - 0.911 carboxypeptidase O [Source:HGNC Symbol;Acc:HGNC:21011]
67. ENSGALG00000027169 ENSGALG00000027169 2 0.911 - - - - - - - - - 0.911
68. ENSGALG00000019711 ENSGALG00000019711 4 0.911 - - - - - - - - - 0.911
69. GALNTL6 ENSGALG00000030588 3 0.911 - - - - - - - - - 0.911 polypeptide N-acetylgalactosaminyltransferase-like 6
70. NEK10 ENSGALG00000040569 1 0.911 - - - - - - - - - 0.911 NIMA related kinase 10 [Source:HGNC Symbol;Acc:HGNC:18592]
71. TH ENSGALG00000029648 2 0.911 - - - - - - - - - 0.911 tyrosine hydroxylase [Source:NCBI gene;Acc:395592]
72. SIGIRR ENSGALG00000004267 72 0.903 - - - - - - 0.903 - - - single Ig and TIR domain containing [Source:NCBI gene;Acc:422995]
73. KLB ENSGALG00000041663 69 0.894 - - - - 0.894 - - - - - klotho beta [Source:HGNC Symbol;Acc:HGNC:15527]
74. PLG ENSGALG00000004293 11 0.89 - - - - - - 0.890 - - - plasminogen
75. ESRRB ENSGALG00000041775 43 0.889 - - - - - - 0.889 - - - estrogen related receptor beta [Source:HGNC Symbol;Acc:HGNC:3473]
76. TFPI2 ENSGALG00000009512 84 0.882 - - - - - - - - - 0.882 tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761]
77. PDSS2 ENSGALG00000015313 280 0.878 - - - - - - 0.878 - - - Gallus gallus prenyl (decaprenyl) diphosphate synthase, subunit 2 (PDSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318441]
78. KIRREL3 ENSGALG00000029197 5 0.878 - - - - - - - - - 0.878 kirre like nephrin family adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:23204]
79. MCOLN2 ENSGALG00000008722 33 0.863 - - - - 0.863 - - - - - mucolipin 2 [Source:HGNC Symbol;Acc:HGNC:13357]
80. TECTB ENSGALG00000008802 6 0.858 - - - - 0.858 - - - - - tectorin beta [Source:NCBI gene;Acc:396320]
81. SNORD97 SNORD97 4 0.858 - - - - - - - - - 0.858
82. RCAN2 ENSGALG00000016709 8 0.857 - - - - - - - - - 0.857 regulator of calcineurin 2 [Source:HGNC Symbol;Acc:HGNC:3041]
83. GPR39 ENSGALG00000012171 420 0.854 - - - - - - 0.854 - - - G protein-coupled receptor 39 [Source:NCBI gene;Acc:424282]
84. SLC6A11 ENSGALG00000004879 16 0.854 - - - - - - - - - 0.854 solute carrier family 6 member 11 [Source:HGNC Symbol;Acc:HGNC:11044]
85. ZBTB2 ENSGALG00000012966 112 0.854 - - - - - - - - - 0.854 zinc finger and BTB domain containing 2 [Source:NCBI gene;Acc:421635]
86. SCAMP4 ENSGALG00000001030 29 0.854 - - - - - - - - - 0.854 secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
87. KLHL1 ENSGALG00000016907 21 0.851 - - - - 0.851 - - - - - kelch like family member 1 [Source:HGNC Symbol;Acc:HGNC:6352]
88. ENSGALG00000004223 ENSGALG00000004223 7 0.841 - - - - 0.841 - - - - -
89. ABAT ENSGALG00000007334 28 0.841 - - - - 0.841 - - - - - 4-aminobutyrate aminotransferase [Source:HGNC Symbol;Acc:HGNC:23]
90. DRD3 ENSGALG00000015117 469 0.837 - - - - - - - 0.837 - - dopamine receptor D3 [Source:HGNC Symbol;Acc:HGNC:3024]
91. CSMD2 ENSGALG00000030229 716 0.836 - - - - - - - 0.836 - - CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
92. RAB30 ENSGALG00000017248 359 0.834 - - - - - - - 0.834 - - RAB30, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9770]
93. ZNF335 ENSGALG00000041370 4740 0.831 - - - - - - - 0.831 - - zinc finger protein 335 [Source:NCBI gene;Acc:396131]
94. LOC770996 ENSGALG00000016570 635 0.83 - - - - - - - 0.830 - - L-gulonolactone oxidase-like
95. CCDC73 ENSGALG00000012103 17 0.828 - - - - - - - - - 0.828 coiled-coil domain containing 73 [Source:HGNC Symbol;Acc:HGNC:23261]
96. SLC39A12 ENSGALG00000008602 6 0.828 - - - - - - - - - 0.828 solute carrier family 39 member 12 [Source:HGNC Symbol;Acc:HGNC:20860]
97. SLC7A5 ENSGALG00000005845 261 0.827 - - - - - - - 0.827 - - solute carrier family 7 member 5 [Source:NCBI gene;Acc:415832]
98. GPR132 ENSGALG00000027407 9 0.826 - - - - - - 0.826 - - - G protein-coupled receptor 132, transcript variant X2
99. ACADL ENSGALG00000002891 8058 0.824 - - - - - - - 0.824 - - acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
100. SUSD4 ENSGALG00000009388 48 0.822 - - - - - - 0.822 - - - sushi domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25470]

There are 196 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA