Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CDH4

Gene Name Gene ID Reads Annotation
CDH4 ENSGALG00000005102 3446 cadherin 4 [Source:NCBI gene;Acc:419222]











Genes with expression patterns similar to CDH4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CDH4 ENSGALG00000005102 3446 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cadherin 4 [Source:NCBI gene;Acc:419222]
2. ACAN ENSGALG00000006725 184 1.565 - - - - - - - - 0.853 0.712 aggrecan [Source:NCBI gene;Acc:395798]
3. MYOG ENSGALG00000000172 460 1.56 - - - - - - - - 0.823 0.737 myogenin [Source:NCBI gene;Acc:374004]
4. COL9A3 ENSGALG00000005628 2842 1.485 - - - - - - - - 0.773 0.712 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
5. SPON2 ENSGALG00000038433 1240 0.866 - - - - - - - - 0.866 - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
6. IYD ENSGALG00000012392 315 0.86 - - - - - - - - 0.860 - iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
7. TIMP3 ENSGALG00000028627 8706 0.854 - - - - - - - - 0.854 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
8. C9H2ORF82 ENSGALG00000040264 4201 0.845 - - - - - - - - 0.845 - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
9. COL8A1 ENSGALG00000015253 2505 0.837 - - - - - - - - 0.837 - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
10. OSF-2 OSF-2 10433 0.825 - - - - - - - - 0.825 -
11. SLC24A4 ENSGALG00000010793 238 0.824 - - - - - - - - 0.824 - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
12. PTK2 ENSGALG00000031741 13103 0.819 - - - - - - 0.819 - - - protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
13. OCA2 ENSGALG00000016740 421 0.816 - - - - - - - - 0.816 - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
14. TSPAN5 ENSGALG00000012227 8703 0.811 - - - - - - 0.811 - - - tetraspanin 5 [Source:HGNC Symbol;Acc:HGNC:17753]
15. B3GNT7 ENSGALG00000007701 929 0.811 - - - - - - - - 0.811 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
16. DDX59 ENSGALG00000002164 3314 0.801 - - - - - - 0.801 - - - DEAD-box helicase 59 [Source:HGNC Symbol;Acc:HGNC:25360]
17. CDK5RAP1 ENSGALG00000006738 2628 0.798 - - - - - - 0.798 - - - CDK5 regulatory subunit associated protein 1 [Source:HGNC Symbol;Acc:HGNC:15880]
18. FNDC1 ENSGALG00000011663 1040 0.797 - - - - - - - - - 0.797 fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
19. NPM3 ENSGALG00000032329 21138 0.797 - - - - - - 0.797 - - - nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:HGNC:7931]
20. PROSC 6856 0.796 - - - - - - 0.796 - - - proline synthetase cotranscribed homolog (bacterial), transcript variant X1
21. SCARA3 ENSGALG00000026651 2559 0.793 - - - - - - - - 0.793 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
22. ARID3B ENSGALG00000001376 4290 0.775 - - - - - - 0.775 - - - AT-rich interaction domain 3B [Source:NCBI gene;Acc:100859297]
23. LY6E ENSGALG00000041621 16227 0.77 - - - - - - 0.770 - - - lymphocyte antigen 6 family member E [Source:NCBI gene;Acc:395550]
24. SUDS3 ENSGALG00000007393 8322 0.769 - - - - - - 0.769 - - - SDS3 homolog, SIN3A corepressor complex component [Source:NCBI gene;Acc:427713]
25. STX7 ENSGALG00000034374 4695 0.769 - - - - - - 0.769 - - - syntaxin 7 [Source:NCBI gene;Acc:426930]
26. CLTCL1 ENSGALG00000041760 9351 0.767 - - - - - - 0.767 - - - clathrin, heavy chain-like 1, transcript variant X6
27. THAP5 ENSGALG00000009494 6540 0.766 - - - - - - 0.766 - - - THAP domain containing 5 [Source:NCBI gene;Acc:417784]
28. SAP130 ENSGALG00000002070 9814 0.764 - - - - - - 0.764 - - - Sin3A associated protein 130 [Source:NCBI gene;Acc:424756]
29. TMEM126A ENSGALG00000014066 6149 0.761 - - - - - - 0.761 - - - transmembrane protein 126A [Source:HGNC Symbol;Acc:HGNC:25382]
30. POLE2 ENSGALG00000012237 9023 0.761 - - - - - - 0.761 - - - DNA polymerase epsilon 2, accessory subunit [Source:NCBI gene;Acc:423567]
31. CYP1B1 ENSGALG00000025822 3143 0.761 - - - - - - - - 0.761 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
32. NFU1 ENSGALG00000030200 6882 0.758 - - - - - - 0.758 - - - NFU1 iron-sulfur cluster scaffold [Source:NCBI gene;Acc:419513]
33. SPON1 ENSGALG00000038775 16503 0.754 - - - - - - - - 0.754 - spondin 1 [Source:NCBI gene;Acc:395657]
34. MSMO1 ENSGALG00000009560 6928 0.753 - - - - - - 0.753 - - - methylsterol monooxygenase 1 [Source:NCBI gene;Acc:422423]
35. SETD7 ENSGALG00000009800 1230 0.753 - - - - - - - 0.753 - - SET domain containing lysine methyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:30412]
36. PSMC3 ENSGALG00000008108 22922 0.753 - - - - - - 0.753 - - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
37. NF2 ENSGALG00000008073 4597 0.752 - - - - - - 0.752 - - - neurofibromin 2 [Source:NCBI gene;Acc:395158]
38. ATG5 ENSGALG00000015387 7752 0.751 - - - - - - 0.751 - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
39. SERPINF1 ENSGALG00000003015 5123 0.745 - - - - - - - - - 0.745 serpin family F member 1 [Source:NCBI gene;Acc:417561]
40. UBE2R2 ENSGALG00000001668 9234 0.743 - - - - - - 0.743 - - - ubiquitin conjugating enzyme E2 R2 [Source:NCBI gene;Acc:427021]
41. SEMA3C ENSGALG00000040444 5404 0.743 - - - - - - 0.743 - - - semaphorin 3C [Source:NCBI gene;Acc:374090]
42. PTPN11 ENSGALG00000004821 2658 0.743 - - - - - - 0.743 - - - protein tyrosine phosphatase, non-receptor type 11 [Source:NCBI gene;Acc:395815]
43. COL11A1 ENSGALG00000005180 244 0.743 - - - - - - - - 0.743 - collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
44. TBX22 ENSGALG00000004093 781 0.739 - - - - - - - - - 0.739 T-box 22 [Source:NCBI gene;Acc:373895]
45. EME1 ENSGALG00000007676 3642 0.739 - - - - - - 0.739 - - - essential meiotic structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:24965]
46. FBXO5 ENSGALG00000013607 6156 0.738 - - - - - - 0.738 - - - F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
47. ADAT1 ENSGALG00000000908 1484 0.738 - - - - - - 0.738 - - - adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
48. CHCHD4 ENSGALG00000006328 5860 0.736 - - - - - - - 0.736 - - coiled-coil-helix-coiled-coil-helix domain containing 4 [Source:NCBI gene;Acc:416037]
49. ENSGALG00000020510 ENSGALG00000020510 4037 0.736 - - - - - - 0.736 - - -
50. CRCP ENSGALG00000002587 8809 0.736 - - - - - - 0.736 - - - CGRP receptor component [Source:NCBI gene;Acc:396022]
51. IFNGR1 ENSGALG00000013865 345 0.736 - - - - - - - 0.736 - - interferon gamma receptor 1 [Source:NCBI gene;Acc:421685]
52. WWP2 ENSGALG00000000699 5040 0.736 - - - - - - - - 0.736 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
53. GLIPR2 ENSGALG00000028821 5791 0.735 - - - - - - 0.735 - - - GLI pathogenesis related 2, transcript variant X2
54. GGMOXR1 GGMOXR1 6734 0.733 - - - - - - 0.733 - - -
55. TMEFF1 ENSGALG00000013212 4222 0.733 - - - - - - 0.733 - - - transmembrane protein with EGF-like and two follistatin-like domains 1
56. FADS1 ENSGALG00000007127 5231 0.732 - - - - - - 0.732 - - - fatty acid desaturase 1
57. WASL ENSGALG00000008797 5729 0.731 - - - - - - 0.731 - - - Wiskott-Aldrich syndrome like [Source:NCBI gene;Acc:417750]
58. API5 ENSGALG00000037968 18265 0.731 - - - - - - 0.731 - - - apoptosis inhibitor 5 [Source:NCBI gene;Acc:423168]
59. SNRPA1 ENSGALG00000007170 17764 0.73 - - - - - - 0.730 - - - small nuclear ribonucleoprotein polypeptide A' [Source:NCBI gene;Acc:415523]
60. LDHA ENSGALG00000006300 4796 0.73 - - - - - - 0.730 - - - lactate dehydrogenase A [Source:NCBI gene;Acc:396221]
61. ZC3H13 ENSGALG00000016984 21043 0.73 - - - - - - 0.730 - - - zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:HGNC:20368]
62. STRADA ENSGALG00000000550 6912 0.73 - - - - - - 0.730 - - - STE20-related kinase adaptor alpha [Source:NCBI gene;Acc:419957]
63. POLDIP2 ENSGALG00000003211 11664 0.73 - - - - - - 0.730 - - - DNA polymerase delta interacting protein 2 [Source:NCBI gene;Acc:417565]
64. NME3 ENSGALG00000027635 5974 0.729 - - - - - - 0.729 - - - NME/NM23 nucleoside diphosphate kinase 3 [Source:NCBI gene;Acc:416399]
65. WDR43 ENSGALG00000032529 12235 0.729 - - - - - - 0.729 - - - WD repeat domain 43 [Source:NCBI gene;Acc:421295]
66. NHP2L1 NHP2L1 12124 0.729 - - - - - - 0.729 - - -
67. BARX2B BARX2B 1983 0.727 - - - - - - - - - 0.727
68. ENSGALG00000000017 ENSGALG00000000017 1965 0.725 - - - - - - 0.725 - - -
69. HNRNPD ENSGALG00000011184 10686 0.724 - - - - - - 0.724 - - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
70. CYB5R4 1222 0.724 - - - - - - 0.724 - - - cytochrome b5 reductase 4, transcript variant X2
71. BRP44L BRP44L 30452 0.724 - - - - - - 0.724 - - -
72. COMMD4 ENSGALG00000001572 31664 0.724 - - - - - - 0.724 - - - COMM domain containing 4 [Source:NCBI gene;Acc:770048]
73. CHMP1B ENSGALG00000040746 4031 0.723 - - - - - - 0.723 - - - charged multivesicular body protein 1B [Source:NCBI gene;Acc:422143]
74. RBM17 ENSGALG00000006332 12656 0.723 - - - - - - 0.723 - - - RNA binding motif protein 17 [Source:HGNC Symbol;Acc:HGNC:16944]
75. ZNF536 ENSGALG00000035602 1127 0.723 - - - - - - - - 0.723 - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
76. SMOC1 ENSGALG00000009415 2403 0.722 - - - - - - - - 0.722 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
77. SMDT1 ENSGALG00000011897 9360 0.721 - - - - - - 0.721 - - - single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
78. MURC 3759 0.721 - - - - - - 0.721 - - - muscle related coiled-coil protein
79. T ENSGALG00000011489 2619 0.72 - - - - - - - - 0.720 - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
80. GLB1L2 ENSGALG00000001604 4057 0.72 - - - - - - 0.720 - - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
81. RBP5 ENSGALG00000014662 31268 0.72 - - - - - - 0.720 - - - retinol binding protein 5 [Source:NCBI gene;Acc:418296]
82. ENSGALG00000020995 ENSGALG00000020995 2144 0.719 - - - - - - 0.719 - - -
83. DNAJC19 ENSGALG00000008852 6093 0.719 - - - - - - 0.719 - - - DnaJ heat shock protein family (Hsp40) member C19 [Source:HGNC Symbol;Acc:HGNC:30528]
84. ATP5L ENSGALG00000006899 69561 0.719 - - - - - - 0.719 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
85. SENP6 ENSGALG00000015901 8013 0.718 - - - - - - 0.718 - - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
86. COMMD10 ENSGALG00000002308 7442 0.718 - - - - - - 0.718 - - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
87. MRPL15 ENSGALG00000041086 16820 0.718 - - - - - - 0.718 - - - mitochondrial ribosomal protein L15 [Source:NCBI gene;Acc:421121]
88. TSC22D2 ENSGALG00000027591 6594 0.717 - - - - - - 0.717 - - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
89. PCDH17 ENSGALG00000016941 1006 0.717 - - - - - - - - - 0.717 protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
90. C6orf211 C6orf211 2644 0.717 - - - - - - 0.717 - - -
91. BLOC1S5 ENSGALG00000012782 5885 0.717 - - - - - - 0.717 - - - biogenesis of lysosomal organelles complex 1 subunit 5 [Source:NCBI gene;Acc:420866]
92. MAN2A1 ENSGALG00000000255 4543 0.716 - - - - - - 0.716 - - - mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
93. KIF2C ENSGALG00000010120 8999 0.716 - - - - - - 0.716 - - - kinesin family member 2C, transcript variant X1
94. MTIF3 ENSGALG00000017097 2524 0.715 - - - - - - 0.715 - - - mitochondrial translational initiation factor 3 [Source:NCBI gene;Acc:418930]
95. KIAA0196 KIAA0196 4011 0.715 - - - - - - 0.715 - - -
96. TTYH2 ENSGALG00000026940 15628 0.715 - - - - - - 0.715 - - - tweety family member 2 [Source:HGNC Symbol;Acc:HGNC:13877]
97. RPL12 ENSGALG00000008806 229862 0.715 - - - - - - - - 0.715 - ribosomal protein L12 [Source:NCBI gene;Acc:417264]
98. MANF ENSGALG00000002362 7518 0.714 - - - - - - 0.714 - - - mesencephalic astrocyte derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:15461]
99. MSRB1 ENSGALG00000005414 4197 0.713 - - - - - - 0.713 - - - methionine sulfoxide reductase B1 [Source:NCBI gene;Acc:416540]
100. FCHSD2 ENSGALG00000017329 3190 0.713 - - - - - - 0.713 - - - FCH and double SH3 domains 2 [Source:HGNC Symbol;Acc:HGNC:29114]

There are 37 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA