Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CDH3

Gene Name Gene ID Reads Annotation
CDH3 5050 cadherin 3











Genes with expression patterns similar to CDH3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CDH3 5050 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cadherin 3
2. UPK3BL ENSGALG00000001885 1650 2.304 - - - - - - - 0.795 0.797 0.712 uroplakin 3B-like
3. MRPL21 ENSGALG00000004362 20796 1.892 - - - - 0.900 - 0.992 - - - mitochondrial ribosomal protein L21 [Source:NCBI gene;Acc:423000]
4. TMF1 ENSGALG00000013408 3344 1.776 - - - - 0.978 - - 0.798 - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
5. KIF11 ENSGALG00000030597 5528 1.744 - - 0.766 - 0.978 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
6. LMAN2 ENSGALG00000033232 11740 1.738 - - - - 0.974 - - 0.764 - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
7. COX6A1 ENSGALG00000007205 72629 1.702 - - - - 0.752 - 0.950 - - - cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
8. EIF3A ENSGALG00000009328 39982 1.697 - - - - 0.720 - 0.977 - - - eukaryotic translation initiation factor 3 subunit A [Source:HGNC Symbol;Acc:HGNC:3271]
9. EPCAM ENSGALG00000008969 10014 1.58 - - - - - 0.779 - - 0.801 - epithelial cell adhesion molecule [Source:NCBI gene;Acc:421292]
10. CDH1 ENSGALG00000000608 6156 1.556 - - - - - - - - 0.781 0.775 cadherin 3 [Source:NCBI gene;Acc:414845]
11. GAL10 GAL10 33355 1.5 - - - - - - - - 0.757 0.743
12. UBR2 ENSGALG00000009906 7717 1.488 - - 0.706 - - - - 0.782 - - ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
13. DCDC2 ENSGALG00000042454 2306 1.471 - - - - - - - - 0.771 0.700 doublecortin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18141]
14. ASTL ENSGALG00000037220 2775 1.441 - - - - - - - - 0.715 0.726 astacin like metalloendopeptidase [Source:NCBI gene;Acc:423176]
15. PRIM2 ENSGALG00000016278 5160 0.999 - - - - - - 0.999 - - - DNA primase subunit 2 [Source:NCBI gene;Acc:421878]
16. AMFR ENSGALG00000003107 6560 0.998 - - - - - - 0.998 - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
17. IFT57 ENSGALG00000015356 5540 0.998 - - - - - - 0.998 - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
18. NUP188 ENSGALG00000043394 9288 0.998 - - - - - - 0.998 - - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
19. MSH6 ENSGALG00000008957 6396 0.998 - - - - - - 0.998 - - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
20. ANAPC2 ENSGALG00000008625 8822 0.998 - - - - - - 0.998 - - - anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
21. USP9X ENSGALG00000016236 9419 0.998 - - - - - - 0.998 - - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
22. RNF126 ENSGALG00000042948 4724 0.998 - - - - - - 0.998 - - - ring finger protein 126 [Source:NCBI gene;Acc:420085]
23. EMC1 ENSGALG00000003969 6876 0.998 - - - - - - 0.998 - - - ER membrane protein complex subunit 1 [Source:NCBI gene;Acc:419470]
24. FBXL21 ENSGALG00000006327 2910 0.998 - - - - - - 0.998 - - - F-box and leucine rich repeat protein 21 [Source:NCBI gene;Acc:416306]
25. HIBCH ENSGALG00000043307 11990 0.998 - - - - - - 0.998 - - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
26. KDM4B ENSGALG00000034592 6711 0.998 - - - - - - 0.998 - - - lysine demethylase 4B, transcript variant X8
27. MIPEP ENSGALG00000017118 8666 0.998 - - - - - - 0.998 - - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
28. PSMD14 ENSGALG00000011128 13335 0.998 - - - - - - 0.998 - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
29. NUP133 ENSGALG00000011091 3804 0.998 - - - - - - 0.998 - - - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
30. FAM174A ENSGALG00000026203 8369 0.998 - - - - - - 0.998 - - - family with sequence similarity 174 member A [Source:HGNC Symbol;Acc:HGNC:24943]
31. SPAG1 ENSGALG00000033254 1370 0.998 - - - - - - 0.998 - - - sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
32. ZNF384 ENSGALG00000032599 2369 0.998 - - - - - - 0.998 - - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
33. MAMDC2 ENSGALG00000015115 1512 0.998 - - - - - - 0.998 - - - MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
34. MEX3A ENSGALG00000014016 3692 0.998 - - - - - - 0.998 - - - mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]
35. ZNF367 ENSGALG00000012629 3215 0.998 - - - - - - 0.998 - - - zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
36. SLC12A4 ENSGALG00000034179 5674 0.998 - - - - - - 0.998 - - - solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
37. SP4 ENSGALG00000039454 5597 0.998 - - - - - - 0.998 - - - Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
38. NDUFS5 ENSGALG00000003625 27698 0.997 - - - - - - 0.997 - - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
39. RWDD3 ENSGALG00000038421 10909 0.997 - - - - - - 0.997 - - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
40. SSR2 ENSGALG00000000764 32190 0.997 - - - - - - 0.997 - - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
41. SMARCD2 ENSGALG00000029304 11867 0.997 - - - - - - 0.997 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
42. AP1G1 12403 0.997 - - - - - - 0.997 - - - adaptor related protein complex 1 gamma 1 subunit, transcript variant X2
43. NUP153 ENSGALG00000012720 8079 0.997 - - - - - - 0.997 - - - nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]
44. TCF21 ENSGALG00000029024 8252 0.996 - - - - - - 0.996 - - - transcription factor 21 [Source:NCBI gene;Acc:421697]
45. RBPMS_1 ENSGALG00000010291 16146 0.996 - - - - - - 0.996 - - - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
46. ACVR1 ENSGALG00000037301 6448 0.996 - - - - - - 0.996 - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
47. OAZ2 ENSGALG00000036288 13213 0.996 - - - - - - 0.996 - - - Gallus gallus ornithine decarboxylase antizyme 2 (OAZ2), mRNA. [Source:RefSeq mRNA;Acc:NM_001142862]
48. NTPCR ENSGALG00000011015 8652 0.996 - - - - - - 0.996 - - - nucleoside-triphosphatase, cancer-related [Source:NCBI gene;Acc:428588]
49. HOXB2 ENSGALG00000025774 5280 0.995 - - - - - - 0.995 - - - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
50. BTBD1 ENSGALG00000006020 14157 0.994 - - - - - - 0.994 - - - BTB domain containing 1 [Source:NCBI gene;Acc:415461]
51. SPC25 ENSGALG00000010900 14238 0.994 - - - - - - 0.994 - - - SPC25, NDC80 kinetochore complex component [Source:NCBI gene;Acc:424172]
52. NANS ENSGALG00000015320 10552 0.992 - - - - - - 0.992 - - - N-acetylneuraminate synthase [Source:NCBI gene;Acc:427283]
53. NDUFB5 ENSGALG00000009076 32963 0.988 - - - - - - 0.988 - - - NADH:ubiquinone oxidoreductase subunit B5 [Source:NCBI gene;Acc:424978]
54. HOXA4 ENSGALG00000022622 22327 0.987 - - - - - - 0.987 - - - homeobox A4 [Source:NCBI gene;Acc:395307]
55. RALGDS ENSGALG00000003412 4478 0.985 - - - - 0.985 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
56. ERLIN2 ENSGALG00000003092 18251 0.983 - - - - - - 0.983 - - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
57. BRF1 ENSGALG00000011705 3406 0.982 - - - - 0.982 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
58. ZC3H15 ENSGALG00000041857 19808 0.982 - - - - - - 0.982 - - - zinc finger CCCH-type containing 15 [Source:NCBI gene;Acc:423992]
59. SNX14 ENSGALG00000015831 2554 0.982 - - - - 0.982 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
60. MRPL16 ENSGALG00000029419 8033 0.982 - - - - 0.982 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
61. SMG7 ENSGALG00000004667 707 0.981 - - - - 0.981 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
62. PRDM4 ENSGALG00000012619 876 0.981 - - - - 0.981 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
63. SDCBP ENSGALG00000015436 1228 0.981 - - - - 0.981 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
64. THG1L ENSGALG00000003722 7497 0.981 - - - - - - 0.981 - - - tRNA-histidine guanylyltransferase 1 like [Source:NCBI gene;Acc:416242]
65. ANKRD9 ENSGALG00000011376 525 0.981 - - - - 0.981 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
66. PREP2 PREP2 238 0.981 - - - - 0.981 - - - - -
67. PITHD1 ENSGALG00000003986 11470 0.981 - - - - 0.981 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
68. NDUFV1 ENSGALG00000042809 6222 0.981 - - - - 0.981 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
69. RAMP3 ENSGALG00000037246 1187 0.98 - - - - 0.980 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
70. YARS ENSGALG00000003563 11093 0.98 - - - - 0.980 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
71. HSF2 ENSGALG00000038420 5259 0.98 - - - - 0.980 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
72. RBM6 ENSGALG00000035578 1690 0.98 - - - - 0.980 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
73. SAP30 ENSGALG00000036252 2032 0.98 - - - - 0.980 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
74. MED8 ENSGALG00000009993 3095 0.98 - - - - 0.980 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
75. TSPO2 ENSGALG00000003212 5141 0.98 - - - - 0.980 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
76. PTK2B ENSGALG00000016564 406 0.98 - - - - 0.980 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
77. LZIC ENSGALG00000002616 9052 0.979 - - - - 0.979 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
78. RAD54B ENSGALG00000043597 1699 0.979 - - - - 0.979 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
79. ASAP2 ENSGALG00000016419 1393 0.979 - - - - 0.979 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
80. GTF2H1 ENSGALG00000042340 1553 0.979 - - - - 0.979 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
81. PBRM1 ENSGALG00000037455 6450 0.978 - - - - 0.978 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
82. PHTF1 ENSGALG00000001845 3276 0.978 - - - - 0.978 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
83. DGKZ ENSGALG00000008380 5389 0.978 - - - - 0.978 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
84. FNDC5 ENSGALG00000003567 3328 0.978 - - - - 0.978 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
85. RBM34 ENSGALG00000029915 5618 0.977 - - - - 0.977 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
86. IARS2 ENSGALG00000009566 4599 0.977 - - - - 0.977 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
87. EDNRA ENSGALG00000010013 2472 0.977 - - - - 0.977 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
88. SYNE1 ENSGALG00000013505 2324 0.977 - - - - 0.977 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
89. ETS1 ENSGALG00000001143 7284 0.977 - - - - 0.977 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
90. PSMG3 ENSGALG00000004203 11240 0.975 - - - - 0.975 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
91. TIMMDC1 ENSGALG00000024480 9337 0.975 - - - - 0.975 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
92. COQ5 ENSGALG00000007185 5614 0.974 - - - - 0.974 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
93. UPF3B ENSGALG00000008618 12350 0.974 - - - - 0.974 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
94. FAM214A ENSGALG00000042839 3378 0.974 - - - - - - - 0.974 - - family with sequence similarity 214 member A [Source:NCBI gene;Acc:415416]
95. ENSGALG00000006569 ENSGALG00000006569 2169 0.974 - - - - 0.974 - - - - -
96. BAHD1 ENSGALG00000033675 1779 0.974 - - - - 0.974 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
97. STARD3NL ENSGALG00000033038 4851 0.973 - - - - 0.973 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
98. LGMN ENSGALG00000010811 7401 0.973 - - - - 0.973 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
99. C9orf85 ENSGALG00000026001 4110 0.972 - - - - 0.972 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
100. SFXN5 ENSGALG00000016094 2678 0.972 - - - - 0.972 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]

There are 288 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA