Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CDH1

Gene Name Gene ID Reads Annotation
CDH1 ENSGALG00000000608 6156 cadherin 3 [Source:NCBI gene;Acc:414845]











Genes with expression patterns similar to CDH1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CDH1 ENSGALG00000000608 6156 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cadherin 3 [Source:NCBI gene;Acc:414845]
2. GAL10 GAL10 33355 2.657 - - - 0.865 - - - - 0.923 0.869
3. EPCAM ENSGALG00000008969 10014 2.505 - - 0.782 - - - - - 0.855 0.868 epithelial cell adhesion molecule [Source:NCBI gene;Acc:421292]
4. FAH ENSGALG00000006482 589 2.383 - - - 0.797 - - - - 0.732 0.854 fumarylacetoacetate hydrolase [Source:NCBI gene;Acc:415482]
5. TF ENSGALG00000006453 14007 2.345 - - - 0.766 - - - - 0.805 0.774 transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
6. UPK3BL ENSGALG00000001885 1650 1.748 - - - - - - - - 0.863 0.885 uroplakin 3B-like
7. ASTL ENSGALG00000037220 2775 1.712 - - - - - - - - 0.821 0.891 astacin like metalloendopeptidase [Source:NCBI gene;Acc:423176]
8. DCDC2 ENSGALG00000042454 2306 1.704 - - - - - - - - 0.870 0.834 doublecortin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18141]
9. C1orf216 ENSGALG00000002353 1886 1.691 - - - - - - - - 0.846 0.845 chromosome 1 open reading frame 216 [Source:HGNC Symbol;Acc:HGNC:26800]
10. TSPAN8 ENSGALG00000010152 2666 1.668 - - - - - - - - 0.784 0.884 tetraspanin 8 [Source:NCBI gene;Acc:417854]
11. GSTA3 ENSGALG00000016325 1254 1.666 - - - 0.818 - - - - - 0.848 glutathione S-transferase alpha 3 [Source:NCBI gene;Acc:414896]
12. PAX2 ENSGALG00000005689 351 1.627 - - - - - - - - 0.786 0.841 paired box 2 [Source:NCBI gene;Acc:395574]
13. PGO2 PGO2 589 1.593 - - - - - - - - 0.760 0.833
14. HNF1B ENSGALG00000005504 1146 1.591 - - - - - - - - 0.726 0.865 HNF1 homeobox B [Source:HGNC Symbol;Acc:HGNC:11630]
15. VMA21 ENSGALG00000009065 6432 1.565 - - - - - - 0.745 0.820 - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
16. HOXD8 ENSGALG00000037272 4338 1.559 - - - - - - - 0.776 - 0.783 homeobox D8 [Source:NCBI gene;Acc:396301]
17. CDH3 5050 1.556 - - - - - - - - 0.781 0.775 cadherin 3
18. SLC2A9 ENSGALG00000014971 751 1.547 - - - - - - - - 0.729 0.818 solute carrier family 2 member 9 [Source:HGNC Symbol;Acc:HGNC:13446]
19. PPDPF ENSGALG00000005849 16711 1.515 - - - - - - 0.782 - 0.733 - pancreatic progenitor cell differentiation and proliferation factor [Source:NCBI gene;Acc:419245]
20. OGFOD3 ENSGALG00000001618 2438 1.507 - - 0.701 - - - - 0.806 - - 2-oxoglutarate and iron dependent oxygenase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26174]
21. MAP3K7 ENSGALG00000015596 15164 1.506 - - - - - - 0.730 0.776 - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
22. LGALS3 ENSGALG00000012173 3306 1.5 - - - - - - - - 0.763 0.737 galectin 3 [Source:NCBI gene;Acc:373917]
23. EGFL7 ENSGALG00000043499 6272 1.43 - - - - - - - - 0.715 0.715 EGF like domain multiple 7 [Source:NCBI gene;Acc:417137]
24. MST4 MST4 1931 0.93 - - 0.930 - - - - - - -
25. TTR ENSGALG00000015143 9764 0.891 - - - 0.891 - - - - - - transthyretin [Source:NCBI gene;Acc:396277]
26. TMEM9B ENSGALG00000005908 14074 0.89 - - - - - - - 0.890 - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
27. PKD2 ENSGALG00000010921 55 0.881 - - 0.881 - - - - - - - polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
28. BRWD3 ENSGALG00000007151 3495 0.88 - - 0.880 - - - - - - - bromodomain and WD repeat domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17342]
29. ENSGALG00000011942 ENSGALG00000011942 175 0.869 - - 0.869 - - - - - - -
30. MAB21L2 4841 0.868 - - 0.868 - - - - - - - mab-21-like 2 (C. elegans)
31. SERPINF2 ENSGALG00000002987 236 0.863 - - - 0.863 - - - - - - serpin family F member 2 [Source:HGNC Symbol;Acc:HGNC:9075]
32. MYLK ENSGALG00000011708 10434 0.861 - - - - - - - 0.861 - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
33. RILPL2 ENSGALG00000003321 5632 0.859 - - - - - - - 0.859 - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
34. DVL3 ENSGALG00000008414 38 0.859 - - 0.859 - - - - - - - dishevelled segment polarity protein 3 [Source:HGNC Symbol;Acc:HGNC:3087]
35. ENSGALG00000004127 ENSGALG00000004127 566 0.858 - - 0.858 - - - - - - -
36. SMS ENSGALG00000016379 11607 0.857 - - - - - - - - - 0.857 spermine synthase [Source:NCBI gene;Acc:418602]
37. ANGPTL3 ENSGALG00000010978 335 0.856 - - - 0.856 - - - - - - angiopoietin like 3 [Source:NCBI gene;Acc:100189558]
38. EMX1 ENSGALG00000030516 408 0.853 - - - - - - - - - 0.853 empty spiracles homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3340]
39. ARF6 ENSGALG00000026944 22014 0.849 - - - - - - - 0.849 - - ADP ribosylation factor 6 [Source:NCBI gene;Acc:428927]
40. RIPK4 ENSGALG00000040189 102 0.848 - - 0.848 - - - - - - - receptor interacting serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:496]
41. TXNL4B ENSGALG00000015327 1505 0.847 - - 0.847 - - - - - - - thioredoxin like 4B [Source:NCBI gene;Acc:418396]
42. SERPINC1 ENSGALG00000004591 68 0.846 - - - 0.846 - - - - - - Gallus gallus serpin family C member 1 (SERPINC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001353945]
43. EML5 ENSGALG00000010639 25 0.846 - - 0.846 - - - - - - - echinoderm microtubule associated protein like 5, transcript variant X1
44. ELF3 ENSGALG00000000616 217 0.846 - - - - - - - - - 0.846 E74 like ETS transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3318]
45. RWDD3 ENSGALG00000038421 10909 0.846 - - - - - - - 0.846 - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
46. KIDINS220 ENSGALG00000016409 854 0.844 - - 0.844 - - - - - - - kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
47. AHR2 ENSGALG00000023742 21 0.844 - - 0.844 - - - - - - - Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
48. UGT1A1 ENSGALG00000004196 30 0.843 - - - - - - - - - 0.843 UDP glucuronosyltransferase family 1 member A1, transcript variant X1
49. PDZK1IP1 ENSGALG00000010473 551 0.842 - - 0.842 - - - - - - - PDZK1 interacting protein 1 [Source:NCBI gene;Acc:424619]
50. C1H11ORF70 ENSGALG00000017189 395 0.842 - - 0.842 - - - - - - - chromosome 1 open reading frame, human C11orf70 [Source:NCBI gene;Acc:418985]
51. BMP2K ENSGALG00000010885 37 0.841 - - 0.841 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
52. ATXN3 ENSGALG00000010766 48 0.841 - - 0.841 - - - - - - - ataxin 3 [Source:NCBI gene;Acc:378424]
53. LLGL1 ENSGALG00000014408 15 0.841 - - 0.841 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
54. RAB11FIP1 41 0.84 - - 0.840 - - - - - - - RAB11 family interacting protein 1, transcript variant X2
55. MB ENSGALG00000012541 260 0.839 - - 0.839 - - - - - - - myoglobin [Source:NCBI gene;Acc:418056]
56. ENSGALG00000028778 ENSGALG00000028778 47 0.839 - - 0.839 - - - - - - -
57. MAP3K8 ENSGALG00000007356 188 0.838 - - 0.838 - - - - - - - mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
58. PLXNB2 ENSGALG00000039861 338 0.838 - - 0.838 - - - - - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
59. FSCN2 ENSGALG00000023354 13 0.837 - - 0.837 - - - - - - - fascin actin-bundling protein 2, retinal [Source:NCBI gene;Acc:429198]
60. FAM3B ENSGALG00000016140 111 0.837 - - 0.837 - - - - - - - family with sequence similarity 3 member B [Source:HGNC Symbol;Acc:HGNC:1253]
61. TIMM10 ENSGALG00000004845 31395 0.837 - - - - - - - 0.837 - - translocase of inner mitochondrial membrane 10 [Source:NCBI gene;Acc:425202]
62. C15orf60 C15orf60 16 0.836 - - 0.836 - - - - - - -
63. DLX6 ENSGALG00000023195 29 0.836 - - 0.836 - - - - - - - distal-less homeobox 6 [Source:NCBI gene;Acc:772070]
64. DNALI1 ENSGALG00000001996 64 0.835 - - 0.835 - - - - - - - dynein axonemal light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
65. NCAPD2 ENSGALG00000039448 8658 0.834 - - - - - - - 0.834 - - non-SMC condensin I complex subunit D2 [Source:NCBI gene;Acc:418275]
66. GALNT11 ENSGALG00000006233 210 0.833 - - 0.833 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
67. PSTK 2511 0.833 - - - - - - - 0.833 - - phosphoseryl-tRNA kinase, transcript variant X1
68. TBC1D8B ENSGALG00000009040 75 0.832 - - 0.832 - - - - - - - TBC1 domain family member 8B [Source:HGNC Symbol;Acc:HGNC:24715]
69. MCM2 ENSGALG00000006037 13458 0.831 - - - - - - - 0.831 - - minichromosome maintenance complex component 2 [Source:NCBI gene;Acc:416027]
70. PRC1 ENSGALG00000012836 20 0.83 - - 0.830 - - - - - - - protein regulator of cytokinesis 1 [Source:NCBI gene;Acc:770336]
71. CYFIP1 ENSGALG00000016736 6701 0.829 - - - - - - - 0.829 - - cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13759]
72. LCAT ENSGALG00000028928 484 0.829 - - - 0.829 - - - - - - lecithin-cholesterol acyltransferase [Source:NCBI gene;Acc:396136]
73. CREB3 ENSGALG00000002523 23 0.829 - - 0.829 - - - - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
74. ANGPTL2 ENSGALG00000000927 2580 0.828 - - - - - - - 0.828 - - angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
75. DGCR2 ENSGALG00000005891 8405 0.828 - - - - - - - 0.828 - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
76. KPNA5 ENSGALG00000014937 28 0.828 - - 0.828 - - - - - - - karyopherin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6398]
77. C1H11ORF67 C1H11ORF67 2089 0.828 - - - - - - - 0.828 - -
78. EPHA1 ENSGALG00000014687 174 0.827 - - 0.827 - - - - - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
79. C4orf19 ENSGALG00000027885 305 0.827 - - - - - - - - - 0.827 chromosome 4 open reading frame 19 [Source:HGNC Symbol;Acc:HGNC:25618]
80. SLC4A1AP ENSGALG00000010047 3171 0.826 - - - - - - - 0.826 - - solute carrier family 4 member 1 adaptor protein [Source:HGNC Symbol;Acc:HGNC:13813]
81. CLCNKB ENSGALG00000003713 27 0.824 - - - - - - - - 0.824 - chloride voltage-gated channel Kb, transcript variant X3
82. ACSF3 ENSGALG00000035225 261 0.823 - - 0.823 - - - - - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
83. ANXA2 ENSGALG00000003770 18252 0.822 - - 0.822 - - - - - - - annexin A2 [Source:NCBI gene;Acc:396297]
84. EIF4E2 ENSGALG00000007919 8163 0.822 - - - - - - - 0.822 - - eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:HGNC:3293]
85. TSG101 ENSGALG00000006312 8289 0.821 - - - - - - - 0.821 - - tumor susceptibility gene 101 [Source:NCBI gene;Acc:423082]
86. PDS5A ENSGALG00000014286 13077 0.82 - - 0.820 - - - - - - - PDS5 cohesin associated factor A [Source:NCBI gene;Acc:422787]
87. TOX3 ENSGALG00000034649 54 0.82 - - 0.820 - - - - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
88. CDC42SE2 ENSGALG00000027258 4725 0.819 - - - - - - - 0.819 - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
89. HADHA ENSGALG00000016536 3791 0.819 - - - - - - - 0.819 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:NCBI gene;Acc:395929]
90. ALG6 ENSGALG00000010991 3258 0.818 - - - - - - - 0.818 - - ALG6, alpha-1,3-glucosyltransferase [Source:NCBI gene;Acc:395078]
91. ZNF800 ENSGALG00000033997 415 0.818 - - 0.818 - - - - - - - zinc finger protein 800 [Source:NCBI gene;Acc:417747]
92. ENSGALG00000005723 ENSGALG00000005723 36 0.818 - - 0.818 - - - - - - -
93. ING4 ENSGALG00000014457 5561 0.817 - - - - - - - 0.817 - - inhibitor of growth family member 4 [Source:NCBI gene;Acc:418281]
94. OTOA ENSGALG00000007070 94 0.815 - - 0.815 - - - - - - - otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
95. FGG ENSGALG00000009268 418 0.815 - - - 0.815 - - - - - - fibrinogen gamma chain [Source:NCBI gene;Acc:395837]
96. FAM199X ENSGALG00000008872 44 0.812 - - 0.812 - - - - - - - family with sequence similarity 199, X-linked [Source:HGNC Symbol;Acc:HGNC:25195]
97. EVC ENSGALG00000015037 1963 0.81 - - - - - - - 0.810 - - EvC ciliary complex subunit 1 [Source:NCBI gene;Acc:422851]
98. SIK1 ENSGALG00000041988 2179 0.81 - - - - - - - 0.810 - - salt inducible kinase 1 [Source:NCBI gene;Acc:395417]
99. NME3 ENSGALG00000027635 5974 0.809 - - - - - - - 0.809 - - NME/NM23 nucleoside diphosphate kinase 3 [Source:NCBI gene;Acc:416399]
100. CD300A CD300A 173 0.809 - - 0.809 - - - - - - -

There are 364 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA