Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCNF

Gene Name Gene ID Reads Annotation
CCNF ENSGALG00000038502 194 cyclin F [Source:HGNC Symbol;Acc:HGNC:1591]











Genes with expression patterns similar to CCNF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CCNF ENSGALG00000038502 194 8 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cyclin F [Source:HGNC Symbol;Acc:HGNC:1591]
2. SAMSN1 ENSGALG00000040926 88 1.666 - - - - - - - 0.802 0.864 - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
3. DCT ENSGALG00000016899 37 0.924 - - - - - - - 0.924 - - dopachrome tautomerase [Source:NCBI gene;Acc:395775]
4. ENSGALG00000005097 ENSGALG00000005097 85 0.919 - - - - - - - - 0.919 -
5. KK34 ENSGALG00000037851 21 0.902 - - - - - - - - 0.902 - interleukin-like [Source:NCBI gene;Acc:407087]
6. CTBS ENSGALG00000008780 26 0.889 - - - - - - - - 0.889 - chitobiase [Source:HGNC Symbol;Acc:HGNC:2496]
7. HAGH ENSGALG00000005398 168 0.876 - - - - - - - 0.876 - - hydroxyacylglutathione hydrolase [Source:NCBI gene;Acc:416537]
8. SYPL1 ENSGALG00000029006 126 0.869 - - - - - - - - 0.869 - synaptophysin like 1 [Source:NCBI gene;Acc:417708]
9. TTF2 ENSGALG00000015249 392 0.861 - - - - - - - - 0.861 - transcription termination factor 2
10. RGS12 ENSGALG00000015626 280 0.857 - - - - - - - - 0.857 - regulator of G protein signaling 12 [Source:HGNC Symbol;Acc:HGNC:9994]
11. GAS2L3 ENSGALG00000028373 1452 0.853 - - - - - - - - 0.853 - growth arrest specific 2 like 3 [Source:NCBI gene;Acc:417931]
12. NR5A2 ENSGALG00000002182 392 0.852 - - - - - - - - 0.852 - nuclear receptor subfamily 5 group A member 2 [Source:NCBI gene;Acc:395961]
13. SIAH3 ENSGALG00000026849 384 0.845 - - - - - - - 0.845 - - siah E3 ubiquitin protein ligase family member 3 [Source:HGNC Symbol;Acc:HGNC:30553]
14. PAWR ENSGALG00000010320 295 0.843 - - - - - - - - 0.843 - pro-apoptotic WT1 regulator [Source:HGNC Symbol;Acc:HGNC:8614]
15. C1QB ENSGALG00000004771 368 0.835 - - - - - - - - 0.835 - complement C1q B chain [Source:HGNC Symbol;Acc:HGNC:1242]
16. GXYLT2 ENSGALG00000007804 670 0.834 - - - - - - - - 0.834 - glucoside xylosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:33383]
17. PLPPR4 ENSGALG00000025896 120 0.832 - - - - - - - - 0.832 - phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]
18. BMP5 ENSGALG00000016293 2119 0.82 - - - - - - - - 0.820 - bone morphogenetic protein 5 [Source:NCBI gene;Acc:396053]
19. TRABD2B ENSGALG00000027655 1090 0.818 - - - - - - - - 0.818 - TraB domain containing 2B [Source:HGNC Symbol;Acc:HGNC:44200]
20. ALKBH8 ENSGALG00000017170 699 0.814 - - - - - - - - 0.814 - alkB homolog 8, tRNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:25189]
21. PVALB1 PVALB1 267 0.813 - - - - - - - 0.813 - -
22. SNTB1 ENSGALG00000034528 3907 0.803 - - - - - - - - 0.803 - syntrophin beta 1 [Source:NCBI gene;Acc:404774]
23. PNPLA7 ENSGALG00000008736 206 0.8 - - - - - - - - 0.800 - patatin like phospholipase domain containing 7 [Source:NCBI gene;Acc:427774]
24. ZFAND4 ENSGALG00000005893 1415 0.798 - - - - - - - - 0.798 - zinc finger AN1-type containing 4 [Source:HGNC Symbol;Acc:HGNC:23504]
25. FGFBP2 ENSGALG00000014501 12 0.796 - - - - - - 0.796 - - - fibroblast growth factor binding protein 2 [Source:NCBI gene;Acc:395094]
26. gga-mir-454 ENSGALG00000033526 22 0.796 - - - - - - - 0.796 - - gga-mir-454 [Source:miRBase;Acc:MI0006984]
27. KLF11 ENSGALG00000016440 65 0.794 - - - - - - - 0.794 - - Kruppel like factor 11 [Source:NCBI gene;Acc:421934]
28. UBE3C ENSGALG00000006461 57 0.794 - - - - - - - 0.794 - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
29. TAGAP ENSGALG00000013747 34 0.794 - - - - - - - 0.794 - - T cell activation RhoGTPase activating protein [Source:HGNC Symbol;Acc:HGNC:15669]
30. ENSGALG00000018499 ENSGALG00000018499 100 0.794 - - - - - - - 0.794 - -
31. DHX58 ENSGALG00000023821 15 0.794 - - - - - - - 0.794 - - Gallus gallus DExH-box helicase 58 (DHX58), mRNA. [Source:RefSeq mRNA;Acc:NM_001318408]
32. CPB1 ENSGALG00000006834 25 0.794 - - - - - - - 0.794 - - carboxypeptidase B1 [Source:NCBI gene;Acc:424888]
33. SLC38A6 ENSGALG00000011893 737 0.792 - - - - - - - - 0.792 - solute carrier family 38 member 6 [Source:HGNC Symbol;Acc:HGNC:19863]
34. IRF-4 IRF-4 19 0.787 - - - - - - - 0.787 - -
35. MGEA5 116 0.786 - - - - - - - 0.786 - - meningioma expressed antigen 5 (hyaluronidase), transcript variant X1
36. REEP2 ENSGALG00000017365 338 0.785 - - - - - - - 0.785 - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
37. BTD ENSGALG00000011216 566 0.783 - - - - - - - 0.783 - - biotinidase [Source:NCBI gene;Acc:420639]
38. PIGF ENSGALG00000020057 201 0.777 - - - - - - - 0.777 - - phosphatidylinositol glycan anchor biosynthesis class F [Source:HGNC Symbol;Acc:HGNC:8962]
39. TRAPPC10 ENSGALG00000022804 407 0.775 - - - - - - - - 0.775 - trafficking protein particle complex 10
40. HMGXB3 ENSGALG00000005770 119 0.775 - - - - - - - 0.775 - - HMG-box containing 3 [Source:HGNC Symbol;Acc:HGNC:28982]
41. SH3GL1 ENSGALG00000001121 159 0.774 - - - - - - - 0.774 - - SH3 domain containing GRB2 like 1, endophilin A2 [Source:NCBI gene;Acc:395202]
42. BTK ENSGALG00000004958 272 0.774 - - - - - - - 0.774 - - Bruton tyrosine kinase [Source:NCBI gene;Acc:374075]
43. ANKRD26 ENSGALG00000009104 71 0.773 - - - - - - - 0.773 - - ankyrin repeat domain 26 [Source:NCBI gene;Acc:417764]
44. PSTPIP2 ENSGALG00000040136 37 0.773 - - - - - - - 0.773 - - proline-serine-threonine phosphatase interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9581]
45. PPP2CA_1 ENSGALG00000006462 3170 0.772 - - - - - - - 0.772 - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
46. SENP7 ENSGALG00000044642 48 0.77 - - - - - - - 0.770 - - SUMO specific peptidase 7 [Source:HGNC Symbol;Acc:HGNC:30402]
47. C2CD5 ENSGALG00000013210 3060 0.768 - - - - - - - - 0.768 - C2 calcium dependent domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29062]
48. FAT4 ENSGALG00000011823 774 0.768 - - - - - - - 0.768 - - FAT atypical cadherin 4 [Source:HGNC Symbol;Acc:HGNC:23109]
49. VIP ENSGALG00000013604 153 0.768 - - - - - - - 0.768 - - vasoactive intestinal peptide [Source:NCBI gene;Acc:396323]
50. ACTR10 ENSGALG00000012041 2752 0.766 - - - - - - - - 0.766 - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
51. CHMP4C ENSGALG00000043573 370 0.766 - - - - - - - - 0.766 - charged multivesicular body protein 4C [Source:NCBI gene;Acc:420201]
52. SLC16A7 ENSGALG00000009759 1108 0.763 - - - - - - - - 0.763 - solute carrier family 16 member 7 [Source:NCBI gene;Acc:417815]
53. SLC1A3 ENSGALG00000003582 2283 0.763 - - - - - - - 0.763 - - solute carrier family 1 member 3 [Source:HGNC Symbol;Acc:HGNC:10941]
54. ZDHHC20 ENSGALG00000017126 58 0.762 - - - - - - - 0.762 - - zinc finger DHHC-type containing 20 [Source:HGNC Symbol;Acc:HGNC:20749]
55. PARM1 ENSGALG00000010268 13 0.76 - - - - - - - 0.760 - - prostate androgen-regulated mucin-like protein 1 [Source:HGNC Symbol;Acc:HGNC:24536]
56. CYP2J22 ENSGALG00000011394 76 0.759 - - - - - - - 0.759 - - Gallus gallus cytochrome P450, family 2, subfamily J, polypeptide 22 (CYP2J22), mRNA. [Source:RefSeq mRNA;Acc:NM_001329480]
57. E2F6 ENSGALG00000016454 4747 0.755 - - - - - - - - 0.755 - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
58. APBA2 ENSGALG00000003930 408 0.753 - - - - - - - - 0.753 - amyloid beta precursor protein binding family A member 2 [Source:HGNC Symbol;Acc:HGNC:579]
59. EPC1 ENSGALG00000007169 101 0.752 - - - - - - - 0.752 - - enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
60. PCASP2 ENSGALG00000027961 42 0.751 - - - - - - - 0.751 - - paracaspase 2 [Source:NCBI gene;Acc:429451]
61. NTL ENSGALG00000005156 278 0.751 - - - - - - 0.751 - - - neurotrypsin-like, transcript variant X7
62. ARSH ENSGALG00000016636 34 0.75 - - - - - - - 0.750 - - arylsulfatase family, member H [Source:NCBI gene;Acc:378798]
63. FBXO22 ENSGALG00000039897 377 0.748 - - - - - - - 0.748 - - F-box protein 22 [Source:NCBI gene;Acc:415355]
64. SLC43A2 ENSGALG00000002783 146 0.748 - - - - - - - - 0.748 - solute carrier family 43 member 2 [Source:HGNC Symbol;Acc:HGNC:23087]
65. LHFPL5 ENSGALG00000039170 247 0.747 - - - - - - - 0.747 - - LHFPL tetraspan subfamily member 5 [Source:NCBI gene;Acc:378916]
66. HOOK1 ENSGALG00000010889 1007 0.747 - - - - - - - - 0.747 - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
67. ZNF236 ENSGALG00000013657 154 0.746 - - - - - - - - 0.746 - zinc finger protein 236 [Source:HGNC Symbol;Acc:HGNC:13028]
68. EGLN3 ENSGALG00000010001 32 0.745 - - - - - - - 0.745 - - egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]
69. PIK3CB ENSGALG00000005505 338 0.745 - - - - - - - 0.745 - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [Source:NCBI gene;Acc:424826]
70. GTF3C6 ENSGALG00000015044 112 0.744 - - - - - - - - 0.744 - general transcription factor IIIC subunit 6 [Source:NCBI gene;Acc:421754]
71. CEP350 ENSGALG00000003955 184 0.744 - - - - - - - - 0.744 - centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
72. ATPBD4 ATPBD4 1823 0.744 - - - - - - - 0.744 - -
73. SLC6A2 ENSGALG00000003560 108 0.744 - - - - - - - 0.744 - - solute carrier family 6 member 2 [Source:NCBI gene;Acc:395458]
74. SFI1 104 0.743 - - - - - - - 0.743 - - SFI1 centrin binding protein, transcript variant X6
75. PDXK ENSGALG00000016205 26 0.742 - - - - - - - 0.742 - - pyridoxal kinase [Source:NCBI gene;Acc:418549]
76. KLF4 ENSGALG00000026928 184 0.742 - - - - - - - - 0.742 - Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]
77. CCDC73 ENSGALG00000012103 17 0.74 - - - - - - - 0.740 - - coiled-coil domain containing 73 [Source:HGNC Symbol;Acc:HGNC:23261]
78. ANGEL2 ENSGALG00000009802 400 0.736 - - - - - - - - 0.736 - angel homolog 2 [Source:NCBI gene;Acc:421363]
79. SACM1L ENSGALG00000040902 70 0.734 - - - - - - - 0.734 - - SAC1 like phosphatidylinositide phosphatase [Source:HGNC Symbol;Acc:HGNC:17059]
80. GINS1 ENSGALG00000008538 4786 0.733 - - - - - - - 0.733 - - GINS complex subunit 1 [Source:NCBI gene;Acc:425297]
81. INO80 ENSGALG00000008553 846 0.732 - - - - - - - - 0.732 - INO80 complex subunit [Source:NCBI gene;Acc:423210]
82. MFSD7 209 0.732 - - - - - - - 0.732 - - major facilitator superfamily domain containing 7, transcript variant X2
83. SVCT2 SVCT2 400 0.73 - - - - - - - 0.730 - -
84. ZC4H2 ENSGALG00000042725 361 0.73 - - - - - - - - 0.730 - zinc finger C4H2-type containing, transcript variant X4
85. PHF20L1 ENSGALG00000033205 7598 0.729 - - - - - - - - 0.729 - PHD finger protein 20 like 1 [Source:NCBI gene;Acc:420323]
86. POLR1D ENSGALG00000007470 1342 0.729 - - - - - - - 0.729 - - RNA polymerase I subunit D
87. PRDM4 ENSGALG00000012619 876 0.729 - - 0.729 - - - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
88. MTBP ENSGALG00000031524 1680 0.728 - - - - - - - - 0.728 - MDM2 binding protein [Source:HGNC Symbol;Acc:HGNC:7417]
89. NSUN3 ENSGALG00000015414 1132 0.728 - - - - - - - - 0.728 - NOP2/Sun RNA methyltransferase family member 3 [Source:HGNC Symbol;Acc:HGNC:26208]
90. LDLRAD1 ENSGALG00000020647 128 0.726 - - - - - - - 0.726 - - low density lipoprotein receptor class A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32069]
91. CYTIP ENSGALG00000012545 25 0.725 - - - - - - - 0.725 - - cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
92. DNAH12 ENSGALG00000005601 80 0.723 - - - - - - - - 0.723 - dynein, axonemal, heavy chain 12, transcript variant X6
93. TCTN3 ENSGALG00000010517 3985 0.723 - - - - - - - - 0.723 - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
94. PPAPDC1A PPAPDC1A 2790 0.722 - - - - - - - - 0.722 -
95. DEF6 ENSGALG00000002615 1038 0.722 - - - - - - - - 0.722 - DEF6, guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:2760]
96. TRIM35 ENSGALG00000016595 357 0.722 - - - - - - - - 0.722 - tripartite motif containing 35 [Source:HGNC Symbol;Acc:HGNC:16285]
97. C20orf194 C20orf194 145 0.722 - - - - - - - - 0.722 -
98. PLAC8 PLAC8 20 0.721 - - - - - - - 0.721 - -
99. CEP104 ENSGALG00000000978 1130 0.718 - - - - - - - 0.718 - - centrosomal protein 104 [Source:HGNC Symbol;Acc:HGNC:24866]
100. TK1 ENSGALG00000007191 277 0.714 - - - - - - - 0.714 - - thymidine kinase 1 [Source:NCBI gene;Acc:395719]

There are 39 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA