Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for CCDC88A_1

Gene Name Gene ID Reads Annotation
CCDC88A_1 CCDC88A_1 12










Genes with expression patterns similar to CCDC88A_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. CCDC88A_1 CCDC88A_1 12 5 - - - 1.000 - 1.000 1.000 1.000 1.000
2. ppp1r3db ENSDARG00000076248 32 2.495 - - - 0.760 - 1.000 0.735 - - protein phosphatase 1, regulatory subunit 3Db [Source:ZFIN;Acc:ZDB-GENE-110201-1]
3. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 2.404 - - - - - 0.844 - 0.804 0.756 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
4. zgc:162402 zgc:162402 298 2.375 - - - - - - 0.708 0.950 0.717
5. hmx4 ENSDARG00000007941, ENSDARG00000115000, ENSDARG00000116208 447 1.879 - - - - - 1.000 - - 0.879 H6 family homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060825-142]
6. cx44.1 cx44.1 799 1.802 - - - - - - - 0.962 0.840
7. foxq2 ENSDARG00000071394 3 1.793 - - - - - - - 0.961 0.832 forkhead box Q2 [Source:ZFIN;Acc:ZDB-GENE-050208-663]
8. crygm2d16 ENSDARG00000076790 129 1.79 - - - - - - - 0.962 0.828 crystallin, gamma M2d16 [Source:ZFIN;Acc:ZDB-GENE-071004-53]
9. zgc:86723 zgc:86723 299 1.784 - - - - - - - 0.948 0.836
10. lim2.1 ENSDARG00000068974, ENSDARG00000114525 233 1.78 - - - - - - - 0.961 0.819 lens intrinsic membrane protein 2.1 [Source:ZFIN;Acc:ZDB-GENE-050522-398]
11. crygm2d9 ENSDARG00000115701 28 1.779 - - - - - - - 0.960 0.819 crystallin, gamma M2d9 [Source:ZFIN;Acc:ZDB-GENE-081105-81]
12. crygm2d8 ENSDARG00000116164 698 1.777 - - - - - - - 0.942 0.835 crystallin, gamma M2d8 [Source:ZFIN;Acc:ZDB-GENE-040718-321]
13. crygm2d14 ENSDARG00000087301 66 1.766 - - - - - - - 0.945 0.821 crystallin, gamma M2d14 [Source:ZFIN;Acc:ZDB-GENE-070822-20]
14. si:ch211-212n6.18 si:ch211-212n6.18 233 1.766 - - - - - - - 0.932 0.834
15. mipa ENSDARG00000037285, ENSDARG00000116133 507 1.758 - - - - - - - 0.922 0.836 major intrinsic protein of lens fiber a [Source:ZFIN;Acc:ZDB-GENE-040801-41]
16. lim2.4 ENSDARG00000015445 791 1.756 - - - - - - - 0.942 0.814 lens intrinsic membrane protein 2.4 [Source:ZFIN;Acc:ZDB-GENE-040718-104]
17. cryba1l2 ENSDARG00000014803 47 1.739 - - - - - - - 0.909 0.830 crystallin, beta A1, like 2 [Source:ZFIN;Acc:ZDB-GENE-041010-40]
18. crygm2d1 ENSDARG00000087324 258 1.737 - - - - - - - 0.901 0.836 crystallin, gamma M2d1 [Source:ZFIN;Acc:ZDB-GENE-050522-395]
19. zgc:165347_1 zgc:165347_1 69 1.734 - - - - - - - 0.921 0.813
20. ggt1a ENSDARG00000023526 26 1.723 - - - - - - - 0.884 0.839 gamma-glutamyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1388]
21. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 1.721 - - - - - - - 0.902 0.819 crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]
22. crygmxl1 ENSDARG00000018797 7 1.717 - - - - - - - 0.899 0.818 crystallin, gamma MX, like 1 [Source:ZFIN;Acc:ZDB-GENE-050522-392]
23. crygm2d12 ENSDARG00000069801, ENSDARG00000113681 394 1.715 - - - - - - - 0.949 0.766 crystallin, gamma M2d12 [Source:ZFIN;Acc:ZDB-GENE-070822-19]
24. dnase1l3l dnase1l3l 16 1.711 - - - - - - - 0.881 0.830
25. cps1 ENSDARG00000020028 67 1.696 - - - - - - - 0.859 0.837 carbamoyl-phosphate synthase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-081105-17]
26. mipb ENSDARG00000013963 753 1.695 - - - - - - - 0.871 0.824 major intrinsic protein of lens fiber b [Source:ZFIN;Acc:ZDB-GENE-050706-86]
27. cryba2a ENSDARG00000030349 1342 1.693 - - - - - - - 0.920 0.773 crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
28. crygm2d10 ENSDARG00000087765 358 1.686 - - - - - - - 0.924 0.762 crystallin, gamma M2d10 [Source:ZFIN;Acc:ZDB-GENE-071004-96]
29. zgc:110053 zgc:110053 69 1.679 - - - - - - - 0.868 0.811
30. si:ch211-212n6.16 si:ch211-212n6.16 314 1.677 - - - - - - - 0.927 0.750
31. pax6l pax6l 54 1.676 - - - - - - - 0.974 0.702
32. cx50.5 cx50.5 15 1.675 - - - - - - - 0.843 0.832
33. cryaa ENSDARG00000053502, ENSDARG00000113469 80 1.67 - - - - - - - 0.846 0.824 crystallin, alpha A [Source:ZFIN;Acc:ZDB-GENE-020508-1]
34. crygm2d6 ENSDARG00000073874 38 1.668 - - - - - - - 0.845 0.823 crystallin, gamma M2d6 [Source:ZFIN;Acc:ZDB-GENE-040625-145]
35. crygm2d15 ENSDARG00000069826 48 1.662 - - - - - - - 0.850 0.812 crystallin, gamma M2d15 [Source:ZFIN;Acc:ZDB-GENE-040718-322]
36. zfpm2b ENSDARG00000100560 125 1.654 - - - - - 0.844 0.810 - - zinc finger protein, FOG family member 2b [Source:ZFIN;Acc:ZDB-GENE-060130-5]
37. lctla ENSDARG00000036139, ENSDARG00000116316 32 1.65 - - - - - - - 0.844 0.806 lactase-like a [Source:ZFIN;Acc:ZDB-GENE-040718-233]
38. cryba1l1 ENSDARG00000032929 1868 1.649 - - - - - - - 0.863 0.786 crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
39. nrl ENSDARG00000100466 41 1.646 - - - - - - - 0.813 0.833 neural retina leucine zipper [Source:ZFIN;Acc:ZDB-GENE-050729-1]
40. lim2.5 ENSDARG00000041295 56 1.646 - - - - - - - 0.918 0.728 lens intrinsic membrane protein 2.5 [Source:ZFIN;Acc:ZDB-GENE-050320-94]
41. SLC38A8 SLC38A8 17 1.644 - - - - - 0.799 - 0.845 -
42. sparcl1 ENSDARG00000074989 80 1.641 - - - - - - - 0.931 0.710 SPARC-like 1 [Source:ZFIN;Acc:ZDB-GENE-060130-6]
43. si:dkey-21o19.2 ENSDARG00000088900 52 1.64 - - - - - - - 0.903 0.737 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
44. si:ch211-219a15.3 ENSDARG00000087659 12 1.639 - - - - - - - 0.836 0.803 si:ch211-219a15.3 [Source:ZFIN;Acc:ZDB-GENE-060503-214]
45. cx23 ENSDARG00000054150 115 1.638 - - - - - - - 0.844 0.794 connexin 23 [Source:ZFIN;Acc:ZDB-GENE-050320-121]
46. crygmxl2 ENSDARG00000074001 282 1.637 - - - - - - - 0.919 0.718 crystallin, gamma MX, like 2 [Source:ZFIN;Acc:ZDB-GENE-050522-401]
47. si:ch211-274p24.3 si:ch211-274p24.3 72 1.634 - - - - - - - 0.898 0.736
48. prox2 ENSDARG00000041952, ENSDARG00000117137 112 1.621 - - - - - - - 0.814 0.807 prospero homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-081003-3]
49. crybb1l1 ENSDARG00000007576 1020 1.612 - - - - - - - 0.802 0.810 crystallin, beta B1, like 1 [Source:ZFIN;Acc:ZDB-GENE-100112-3]
50. lim2.3 ENSDARG00000037402 302 1.608 - - - - - - - 0.893 0.715 lens intrinsic membrane protein 2.3 [Source:ZFIN;Acc:ZDB-GENE-040718-327]
51. ahr1b ENSDARG00000023537 44 1.596 - - - - - - - 0.881 0.715 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
52. hmx1 ENSDARG00000095651, ENSDARG00000109725, ENSDARG00000111765 151 1.593 - - - - - - - 0.776 0.817 H6 family homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-080204-54]
53. capn3a ENSDARG00000041864 89 1.592 - - - - - - - 0.760 0.832 calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
54. otc ENSDARG00000062147 95 1.592 - - - - - - - 0.759 0.833 ornithine carbamoyltransferase [Source:ZFIN;Acc:ZDB-GENE-070912-422]
55. crybb1l3 ENSDARG00000007655 33 1.579 - - - - - - - 0.750 0.829 crystallin, beta B1, like 3 [Source:ZFIN;Acc:ZDB-GENE-070820-11]
56. grifin ENSDARG00000033382 141 1.549 - - - - - - - 0.731 0.818 galectin-related inter-fiber protein [Source:ZFIN;Acc:ZDB-GENE-040801-163]
57. sprn2 ENSDARG00000057665, ENSDARG00000115640 69 1.527 - - - - - 0.804 - - 0.723 shadow of prion protein 2 [Source:ZFIN;Acc:ZDB-GENE-041221-1]
58. ptf1a ENSDARG00000014479 349 1.524 - - - - - - - 0.733 0.791 pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
59. hes2.2 ENSDARG00000068168 197 1.457 - - - - - - - 0.716 0.741 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
60. ndrg1b ENSDARG00000010420 116 1.448 - - - - - - - 0.732 0.716 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
61. rorb ENSDARG00000033498 544 1.425 - - - - - - - 0.720 0.705 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
62. snx24 ENSDARG00000053527 31 1 - - - - - 1.000 - - - sorting nexin 24 [Source:ZFIN;Acc:ZDB-GENE-050913-45]
63. zgc:158260_1 ENSDARG00000101703 0 1 - - - - - 1.000 - - - zgc:158260 [Source:ZFIN;Acc:ZDB-GENE-061201-24]
64. CU041398.1 CU041398.1 17 1 - - - - - 1.000 - - -
65. si:ch211-220b11.4 si:ch211-220b11.4 8 1 - - - - - 1.000 - - -
66. si:ch211-119d14.3 ENSDARG00000075332 12 1 - - - - - 1.000 - - - si:ch211-119d14.3 [Source:ZFIN;Acc:ZDB-GENE-081104-100]
67. cga ENSDARG00000040479 3 1 - - - - - 1.000 - - - glycoprotein hormones, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-040715-2]
68. si:ch73-249k16.1 si:ch73-249k16.1 36 1 - - - - - 1.000 - - -
69. VASH1 ENSDARG00000092716 33 1 - - - - - 1.000 - - - vasohibin 1 [Source:HGNC Symbol;Acc:HGNC:19964]
70. BPHL ENSDARG00000102877 28 1 - - - - - 1.000 - - - biphenyl hydrolase like [Source:ZFIN;Acc:ZDB-GENE-170623-2]
71. clcn2 clcn2 13 1 - - - - - 1.000 - - -
72. si:ch211-196h16.12 ENSDARG00000028276 3 1 - - - - - 1.000 - - - si:ch211-196h16.12 [Source:ZFIN;Acc:ZDB-GENE-121214-351]
73. zgc:171551 ENSDARG00000073708, ENSDARG00000111940 24 1 - - - - - 1.000 - - - zgc:171551 [Source:ZFIN;Acc:ZDB-GENE-080220-8]
74. CABZ01070637.1 CABZ01070637.1 1 1 - - - - - 1.000 - - -
75. SLC4A8 ENSDARG00000015531 16 1 - - - - - 1.000 - - - solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
76. si:dkey-88n24.8 ENSDARG00000091095 9 1 - - - - - 1.000 - - - si:dkey-88n24.8 [Source:ZFIN;Acc:ZDB-GENE-041014-92]
77. slc7a10b ENSDARG00000051730 44 1 - - - - - 1.000 - - - solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10b [Source:ZFIN;Acc:ZDB-GENE-121105-2]
78. FAM188B2 4 1 - - - - - 1.000 - - - family with sequence similarity 188, member B2
79. GSTK1_2 GSTK1_2 8 1 - - - - - 1.000 - - -
80. wdr27 ENSDARG00000053386 2 1 - - - - - 1.000 - - - WD repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-051120-93]
81. tmem64 ENSDARG00000061723, ENSDARG00000113304 62 1 - - - - - 1.000 - - - transmembrane protein 64 [Source:ZFIN;Acc:ZDB-GENE-060503-182]
82. isg15 ENSDARG00000086374 8 1 - - - - - 1.000 - - - ISG15 ubiquitin-like modifier [Source:ZFIN;Acc:ZDB-GENE-021211-1]
83. CU183952.2 CU183952.2 6 1 - - - - - 1.000 - - -
84. MFAP4_6 MFAP4_6 162 1 - - - - - 1.000 - - -
85. UBXN11 ENSDARG00000053828 22 1 - - - - - 1.000 - - - UBX domain protein 11 [Source:ZFIN;Acc:ZDB-GENE-100922-125]
86. fasn ENSDARG00000087657 99 1 - - - - - 1.000 - - - fatty acid synthase [Source:ZFIN;Acc:ZDB-GENE-030131-7802]
87. CR388132.1 ENSDARG00000097728 61 1 - - - - - 1.000 - - -
88. cplx3a ENSDARG00000062508, ENSDARG00000099196, ENSDARG00000112735 58 1 - - - - - 1.000 - - - complexin 3a [Source:ZFIN;Acc:ZDB-GENE-090313-349]
89. CHD6 ENSDARG00000017244 219 1 - - - - - 1.000 - - - chromodomain helicase DNA binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-130530-559]
90. lonrf1 ENSDARG00000075048 13 1 - - - - - 1.000 - - - LON peptidase N-terminal domain and ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-101021-4]
91. CU570981.1 CU570981.1 9 1 - - - - - 1.000 - - -
92. CU571310.1 ENSDARG00000102580 53 1 - - - - - 1.000 - - - ras-related protein Rab-39A-like [Source:NCBI gene;Acc:100330257]
93. si:dkeyp-3f10.17 ENSDARG00000087254 1 1 - - - - - 1.000 - - - si:dkeyp-3f10.17 [Source:ZFIN;Acc:ZDB-GENE-081104-467]
94. pcdh2aa3 0 1 - - - - - 1.000 - - - protocadherin 2 alpha a 3
95. CABZ01055869.1 CABZ01055869.1 2 1 - - - - - 1.000 - - -
96. cabp7b ENSDARG00000060846 5 1 - - - - - 1.000 - - - calcium binding protein 7b [Source:ZFIN;Acc:ZDB-GENE-060526-366]
97. KBTBD13 ENSDARG00000076449 10 1 - - - - - 1.000 - - - kelch repeat and BTB (POZ) domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-140106-122]
98. si:ch211-10j20.1 si:ch211-10j20.1 24 1 - - - - - 1.000 - - -
99. si:dkey-77p23.1 si:dkey-77p23.1 4 1 - - - - - 1.000 - - -
100. SRCRB4D SRCRB4D 4 1 - - - - - 1.000 - - -

There are 474 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA