Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCDC88A

Gene Name Gene ID Reads Annotation
CCDC88A ENSGALG00000043587 2208 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]











Genes with expression patterns similar to CCDC88A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CCDC88A ENSGALG00000043587 2208 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
2. C26H6ORF89 C26H6ORF89 1826 1.802 - - - - 0.846 - - - - 0.956
3. PTX3 ENSGALG00000028284 2984 1.792 - - - - 0.825 - - - - 0.967 pentraxin 3 [Source:NCBI gene;Acc:548626]
4. PCNP ENSGALG00000015330 15750 1.759 - - - - 0.843 - - - - 0.916 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
5. STIL ENSGALG00000010478 1398 1.755 - - - - 0.837 - - - - 0.918 STIL, centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]
6. GTF3C1 ENSGALG00000007387 5788 1.748 - - - - 0.809 - - - - 0.939 general transcription factor IIIC subunit 1 [Source:HGNC Symbol;Acc:HGNC:4664]
7. TMEM68 ENSGALG00000031835 1691 1.707 - - - - 0.775 - - - - 0.932 transmembrane protein 68 [Source:NCBI gene;Acc:421124]
8. RRAGC ENSGALG00000033079 4966 1.683 - - - - 0.738 - - - - 0.945 Ras related GTP binding C [Source:NCBI gene;Acc:419605]
9. NAA30 ENSGALG00000012098 4681 1.674 - - - - - 0.787 - - - 0.887 N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
10. WRNIP1 ENSGALG00000012856 1954 1.668 - - - - 0.731 - - - - 0.937 Werner helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
11. CCNE2 ENSGALG00000040794 1229 1.659 - - - - - 0.732 - - - 0.927 cyclin E2 [Source:NCBI gene;Acc:420231]
12. AFG3L2 ENSGALG00000013853 1138 1.647 - - - - - 0.759 - - - 0.888 AFG3 like matrix AAA peptidase subunit 2 [Source:HGNC Symbol;Acc:HGNC:315]
13. WASF1 ENSGALG00000015066 5628 1.622 - - - - 0.740 - - - - 0.882 WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
14. TCERG1 ENSGALG00000007528 6346 1.612 0.736 - - - - - - - - 0.876 transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
15. RDX ENSGALG00000017153 6734 1.609 0.773 - - - - - - - - 0.836 radixin [Source:NCBI gene;Acc:395511]
16. EXOSC1 ENSGALG00000039917 5259 1.604 - - - - 0.815 - - - - 0.789 exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]
17. NAP1L1 ENSGALG00000010238 14506 1.603 0.824 - - - - - - - - 0.779 nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
18. C10ORF58 C10ORF58 5045 1.589 - - - - 0.727 - - - - 0.862
19. GTF2E1 ENSGALG00000042320 7712 1.569 - - - - 0.763 - - - - 0.806 general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
20. SYNGR2 ENSGALG00000027902 6953 1.568 - - - - 0.729 - - - - 0.839 Gallus gallus synaptogyrin 2 (SYNGR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318453]
21. RPA3 ENSGALG00000010700 6212 1.549 - - - - 0.812 - - - - 0.737 replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
22. NUBP1 ENSGALG00000007241 3791 1.505 - - - - 0.740 - - - - 0.765 nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
23. UFD1L 12964 1.504 - - - - 0.781 - - - - 0.723 ubiquitin fusion degradation 1 like (yeast)
24. MRPS10 ENSGALG00000009890 9157 1.436 - - - - - 0.715 - - - 0.721 mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:421385]
25. AGGF1 ENSGALG00000004311 3011 0.985 - - - - - - - - - 0.985 angiogenic factor with G-patch and FHA domains 1, transcript variant X1
26. MTSS1 ENSGALG00000041969 1312 0.984 - - - - - - - - - 0.984 MTSS1, I-BAR domain containing [Source:NCBI gene;Acc:420336]
27. RWDD2B ENSGALG00000015807 3601 0.982 - - - - - - - - - 0.982 RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
28. DIAPH3 ENSGALG00000016937 1069 0.982 - - - - - - - - - 0.982 diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
29. LAMP2 ENSGALG00000008572 198 0.981 - - - - - - - - - 0.981 lysosomal associated membrane protein 2 [Source:NCBI gene;Acc:414800]
30. IL10R2 IL10R2 72 0.981 - - - - - - - - - 0.981
31. PM20D2 ENSGALG00000015779 1301 0.98 - - - - - - - - - 0.980 peptidase M20 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21408]
32. ZNF6 ZNF6 138 0.98 - - - - - - - - - 0.980
33. FAM190B FAM190B 165 0.979 - - - - - - - - - 0.979
34. CPNE2 ENSGALG00000001316 236 0.979 - - - - - - - - - 0.979 copine 2 [Source:NCBI gene;Acc:415646]
35. MSI1 ENSGALG00000007227 2279 0.979 - - - - - - - - - 0.979 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
36. 5S_2 5S_2 58 0.979 - - - - - - - - - 0.979
37. SSH1 ENSGALG00000004928 222 0.978 - - - - - - - - - 0.978 slingshot protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:30579]
38. WDSUB1 ENSGALG00000012574 2038 0.978 - - - - - - - - - 0.978 WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
39. SOX6 ENSGALG00000006074 102 0.978 - - - - - - - - - 0.978 Gallus gallus SRY-box 6 (SOX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001318451]
40. BRD1 ENSGALG00000029379 6047 0.978 - - - - - - - - - 0.978 bromodomain containing 1 [Source:NCBI gene;Acc:417731]
41. CXADR ENSGALG00000015701 96 0.978 - - - - - - - - - 0.978 coxsackie virus and adenovirus receptor, transcript variant X2
42. CNTRL ENSGALG00000001513 1773 0.977 - - - - - - - - - 0.977 centriolin [Source:NCBI gene;Acc:417121]
43. ACADL ENSGALG00000002891 8058 0.977 - - - - - - - - - 0.977 acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
44. PROM1 ENSGALG00000014496 2494 0.977 - - - - - - - - - 0.977 prominin 1 [Source:NCBI gene;Acc:422825]
45. FRMD3 ENSGALG00000012577 999 0.977 - - - - - - - - - 0.977 FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
46. AURKA ENSGALG00000007768 793 0.977 - - - - - - - - - 0.977 aurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]
47. ITSN2 ENSGALG00000016504 651 0.977 - - - - - - - - - 0.977 intersectin 2 [Source:HGNC Symbol;Acc:HGNC:6184]
48. SSR2 ENSGALG00000000764 32190 0.976 - - - - - - - - - 0.976 signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
49. ARHGAP21 ENSGALG00000007721 3961 0.976 - - - - - - - - - 0.976 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
50. CDH1-A CDH1-A 343 0.976 - - - - - - - - - 0.976
51. PCLO 249 0.976 - - - - - - - - - 0.976 piccolo presynaptic cytomatrix protein
52. HYAL3 ENSGALG00000029000 712 0.976 - - - - - - - - - 0.976 hyaluronoglucosaminidase 3 [Source:HGNC Symbol;Acc:HGNC:5322]
53. FSTL4 ENSGALG00000031487 529 0.975 - - - - - - - - - 0.975 follistatin like 4 [Source:NCBI gene;Acc:395163]
54. SMC6 ENSGALG00000016467 3321 0.975 - - - - - - - - - 0.975 Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
55. APBA3 ENSGALG00000000740 1249 0.975 - - - - - - - - - 0.975 amyloid beta precursor protein binding family A member 3 [Source:HGNC Symbol;Acc:HGNC:580]
56. CASKIN1 604 0.974 - - - - - - - - - 0.974 CASK interacting protein 1, transcript variant X4
57. MYOCD ENSGALG00000001021 351 0.974 - - - - - - - - - 0.974 myocardin [Source:NCBI gene;Acc:427790]
58. HAUS8 ENSGALG00000003727 351 0.974 - - - - - - - - - 0.974 HAUS augmin like complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:30532]
59. C10orf118 C10orf118 762 0.974 - - - - - - - - - 0.974
60. NARS ENSGALG00000040506 9506 0.974 - - - - - - - - - 0.974 asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
61. C14orf80 C14orf80 1921 0.974 - - - - - - - - - 0.974
62. PLA2G15 ENSGALG00000041787 762 0.973 - - - - - - - - - 0.973 phospholipase A2 group XV [Source:HGNC Symbol;Acc:HGNC:17163]
63. WHSC1 1712 0.972 - - - - - - - - - 0.972 Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
64. FASTKD3 ENSGALG00000033521 1186 0.972 - - - - - - - - - 0.972 FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
65. ITGA9 ENSGALG00000029378 415 0.972 - - - - - - - - - 0.972 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
66. TBC1D19 ENSGALG00000029673 1868 0.972 - - - - - - - - - 0.972 TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
67. MPP5 ENSGALG00000009581 724 0.971 - - - - - - - - - 0.971 membrane palmitoylated protein 5 [Source:NCBI gene;Acc:423281]
68. PREX2 ENSGALG00000042354 134 0.971 - - - - - - - - - 0.971 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
69. MB21D1 2460 0.971 - - - - - - - - - 0.971 Mab-21 domain containing 1
70. MYH1D ENSGALG00000027323 365 0.97 - - - - - - - - - 0.970 Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
71. LRRN4 ENSGALG00000008815 481 0.97 - - - - - - - - - 0.970 leucine rich repeat neuronal 4 [Source:HGNC Symbol;Acc:HGNC:16208]
72. FAM129A ENSGALG00000004812 269 0.97 - - - - - - - - - 0.970 family with sequence similarity 129 member A [Source:NCBI gene;Acc:424451]
73. ERI2 1087 0.97 - - - - - - - - - 0.970 ERI1 exoribonuclease family member 2, transcript variant X1
74. CRYM ENSGALG00000002484 3558 0.97 - - - - - - - - - 0.970 crystallin mu [Source:HGNC Symbol;Acc:HGNC:2418]
75. MPRIP ENSGALG00000004798 6700 0.97 - - - - - - - - - 0.970 myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
76. CKAP2 ENSGALG00000017025 25020 0.97 - - - - - - - - - 0.970 cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
77. ZNF106 ENSGALG00000009081 1520 0.97 - - - - - - - - - 0.970 zinc finger protein 106 [Source:HGNC Symbol;Acc:HGNC:12886]
78. INTS10 ENSGALG00000010130 6320 0.969 - - - - - - - - - 0.969 integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
79. GRK4 ENSGALG00000015645 1065 0.969 - - - - - - - - - 0.969 G protein-coupled receptor kinase 4 [Source:NCBI gene;Acc:422879]
80. RTN4R ENSGALG00000007732 1515 0.969 - - - - - - - - - 0.969 reticulon 4 receptor
81. PPFIA1 ENSGALG00000035774 5258 0.968 - - - - - - - - - 0.968 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
82. KMT2C 6306 0.968 - - - - - - - - - 0.968 lysine methyltransferase 2C, transcript variant X14
83. PDPN ENSGALG00000030096 647 0.968 - - - - - - - - - 0.968 podoplanin, transcript variant X4
84. KCNMA1 ENSGALG00000004980 261 0.968 - - - - - - - - - 0.968 potassium calcium-activated channel subfamily M alpha 1 [Source:NCBI gene;Acc:374065]
85. ENSGALG00000005389 ENSGALG00000005389 553 0.967 - - - - - - - - - 0.967
86. TANGO2 ENSGALG00000002056 1971 0.967 - - - - - - - - - 0.967 transport and golgi organization 2 homolog [Source:NCBI gene;Acc:416784]
87. ASAP2 ENSGALG00000016419 1393 0.966 - - - - - - - - - 0.966 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
88. SLC2A3 SLC2A3 527 0.966 - - - - - - - - - 0.966
89. MGA 1911 0.965 - - - - - - - - - 0.965 MGA, MAX dimerization protein, transcript variant X15
90. ASB3 ENSGALG00000008176 5422 0.965 - - - - - - - - - 0.965 ankyrin repeat and SOCS box containing 3 [Source:NCBI gene;Acc:428545]
91. TP53BP1 ENSGALG00000042201 708 0.965 - - - - - - - - - 0.965 tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11999]
92. PPM1E ENSGALG00000005061 2606 0.965 - - - - - - - - - 0.965 protein phosphatase, Mg2+/Mn2+ dependent 1E [Source:HGNC Symbol;Acc:HGNC:19322]
93. SLC39A13 ENSGALG00000008122 2003 0.965 - - - - - - - - - 0.965 solute carrier family 39 member 13 [Source:NCBI gene;Acc:423183]
94. FREM3 ENSGALG00000020561 1824 0.965 - - - - - - - - - 0.965 FRAS1 related extracellular matrix 3
95. RAD50 ENSGALG00000006794 4308 0.964 - - - - - - - - - 0.964 RAD50 double strand break repair protein, transcript variant X4
96. CCT8 ENSGALG00000015821 12161 0.964 - - - - - - - - - 0.964 chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
97. SGSH ENSGALG00000007027 1115 0.963 - - - - - - - - - 0.963 N-sulfoglucosamine sulfohydrolase [Source:HGNC Symbol;Acc:HGNC:10818]
98. ESRRG ENSGALG00000009645 2783 0.963 - - - - - - - - - 0.963 estrogen related receptor gamma [Source:NCBI gene;Acc:421357]
99. PHF13 ENSGALG00000028148 1240 0.963 - - - - - - - - - 0.963 PHD finger protein 13 [Source:NCBI gene;Acc:101750144]
100. MRPL50 ENSGALG00000015543 11649 0.963 - - - - - - - - - 0.963 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]

There are 648 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA