Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCDC40

Gene Name Gene ID Reads Annotation
CCDC40 ENSGALG00000007042 596 coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:HGNC:26090]











Genes with expression patterns similar to CCDC40

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CCDC40 ENSGALG00000007042 596 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:HGNC:26090]
2. LAMP1 ENSGALG00000037697 247 1.575 - - - - - 0.712 0.863 - - - lysosomal associated membrane protein 1 [Source:NCBI gene;Acc:396220]
3. CYP2H1 CYP2H1 363 1.551 - - - - - 0.799 0.752 - - -
4. RPGR ENSGALG00000036284 186 1.483 - - 0.744 - - 0.739 - - - - retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:HGNC:10295]
5. SLC45A4 ENSGALG00000034971 142 1.473 - - - - - 0.719 0.754 - - - solute carrier family 45 member 4 [Source:HGNC Symbol;Acc:HGNC:29196]
6. COL4A2 ENSGALG00000016843 261 1.468 - - 0.720 - - - 0.748 - - - collagen type IV alpha 2 chain [Source:NCBI gene;Acc:418752]
7. APBA2 ENSGALG00000003930 408 0.942 - - - - - - 0.942 - - - amyloid beta precursor protein binding family A member 2 [Source:HGNC Symbol;Acc:HGNC:579]
8. GRIA2 ENSGALG00000009405 275 0.897 - - - - - - 0.897 - - - glutamate ionotropic receptor AMPA type subunit 2 [Source:NCBI gene;Acc:414894]
9. RAB8B ENSGALG00000003487 295 0.895 - - - - - - 0.895 - - - RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30273]
10. DINB1 DINB1 113 0.885 - - - - - - 0.885 - - -
11. ENSGALG00000014900 ENSGALG00000014900 335 0.877 - - - - - - 0.877 - - -
12. MKL2 186 0.875 - - - - - - 0.875 - - - MKL1/myocardin like 2, transcript variant X4
13. F2 ENSGALG00000008332 298 0.871 - - - - - - 0.871 - - - coagulation factor II, thrombin [Source:NCBI gene;Acc:395306]
14. DCBLD1 ENSGALG00000014907 19 0.869 - - - - - - 0.869 - - - discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]
15. ENSGALG00000023475 ENSGALG00000023475 19 0.869 - - - - - - 0.869 - - -
16. MUC5B MUC5B 62 0.869 - - - - - - 0.869 - - -
17. TEX2 ENSGALG00000003496 23 0.869 - - - - - - 0.869 - - - testis expressed 2 [Source:HGNC Symbol;Acc:HGNC:30884]
18. ANO3 ENSGALG00000013311 16 0.869 - - - - - - 0.869 - - - anoctamin 3 [Source:NCBI gene;Acc:422968]
19. C18H17ORF67 ENSGALG00000024428 10 0.869 - - - - - - 0.869 - - - chromosome 18 open reading frame, human C17orf67 [Source:NCBI gene;Acc:417400]
20. FGB ENSGALG00000009262 1169 0.866 - - - - - - 0.866 - - - fibrinogen beta chain [Source:NCBI gene;Acc:373926]
21. FAM104A ENSGALG00000026401 162 0.866 - - 0.866 - - - - - - - family with sequence similarity 104 member A [Source:NCBI gene;Acc:417450]
22. NAPRT1 NAPRT1 227 0.864 - - - - - - 0.864 - - -
23. KCTD5 ENSGALG00000006423 192 0.863 - - - - - - 0.863 - - - potassium channel tetramerization domain containing 5 [Source:HGNC Symbol;Acc:HGNC:21423]
24. LRRC2 ENSGALG00000013634 69 0.86 - - - - - - 0.860 - - - leucine rich repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14676]
25. SVOPL ENSGALG00000012812 27 0.858 - - - - - - 0.858 - - - SVOP like [Source:HGNC Symbol;Acc:HGNC:27034]
26. VTI1B ENSGALG00000009526 133 0.858 - - - - - - 0.858 - - - vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:HGNC:17793]
27. ALPK3 ENSGALG00000037950 54 0.857 - - 0.857 - - - - - - - alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:17574]
28. KYNU ENSGALG00000012418 353 0.857 - - - - - - 0.857 - - - kynureninase, transcript variant X3
29. MOCOS ENSGALG00000013149 25 0.856 - - - - - - 0.856 - - - molybdenum cofactor sulfurase [Source:HGNC Symbol;Acc:HGNC:18234]
30. NKD1 ENSGALG00000003767 76 0.854 - - - - - - 0.854 - - - naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
31. LCAT ENSGALG00000028928 484 0.851 - - - - - - 0.851 - - - lecithin-cholesterol acyltransferase [Source:NCBI gene;Acc:396136]
32. POFUT1 ENSGALG00000006594 367 0.849 - - - - - - 0.849 - - - protein O-fucosyltransferase 1 [Source:NCBI gene;Acc:395070]
33. ADCY2 ENSGALG00000013060 164 0.847 - - - - - 0.847 - - - - adenylate cyclase 2 [Source:HGNC Symbol;Acc:HGNC:233]
34. ENSGALG00000029120 ENSGALG00000029120 73 0.847 - - - - - - 0.847 - - -
35. C9orf171 C9orf171 35 0.846 - - - - - - 0.846 - - -
36. ENDOV 121 0.845 - - - - - - 0.845 - - - endonuclease V
37. PDE4D ENSGALG00000014727 53 0.844 - - - - - - 0.844 - - - phosphodiesterase 4D [Source:HGNC Symbol;Acc:HGNC:8783]
38. LMCD1 ENSGALG00000008349 928 0.844 - - - - - - 0.844 - - - LIM and cysteine rich domains 1 [Source:HGNC Symbol;Acc:HGNC:6633]
39. TSPAN14 ENSGALG00000002414 69 0.844 - - - - - - 0.844 - - - tetraspanin 14 [Source:NCBI gene;Acc:423624]
40. RSFR 61 0.842 - - - - - - 0.842 - - - leukocyte ribonuclease A-2
41. PRKCE ENSGALG00000010000 99 0.841 - - - - - - 0.841 - - - protein kinase C epsilon, transcript variant X1
42. PQLC3 ENSGALG00000016449 39 0.841 - - 0.841 - - - - - - - PQ loop repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:28503]
43. ARHGAP15 ENSGALG00000012421 58 0.84 - - - - - - 0.840 - - - Rho GTPase activating protein 15 [Source:NCBI gene;Acc:424303]
44. USP18 ENSGALG00000013057 209 0.84 - - 0.840 - - - - - - - ubiquitin specific peptidase 18, transcript variant X2
45. LOC770996 ENSGALG00000016570 635 0.839 - - - - - - 0.839 - - - L-gulonolactone oxidase-like
46. PCP4 ENSGALG00000022819 880 0.838 - - - - - - 0.838 - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
47. MLF1 ENSGALG00000009654 619 0.838 - - - - - - 0.838 - - - myeloid leukemia factor 1, transcript variant X3
48. UBE3C ENSGALG00000006461 57 0.835 - - - - - 0.835 - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
49. TDRD5 ENSGALG00000033634 40 0.834 - - - - - - 0.834 - - - tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614]
50. RGS14 ENSGALG00000003113 870 0.833 - - - - - 0.833 - - - - regulator of G protein signaling 14 [Source:HGNC Symbol;Acc:HGNC:9996]
51. SEH1L ENSGALG00000013872 315 0.832 - - 0.832 - - - - - - - SEH1 like nucleoporin [Source:HGNC Symbol;Acc:HGNC:30379]
52. ATP6V1AL ENSGALG00000000048 21 0.832 - - - - - - 0.832 - - - ATPase H+ transporting V1 subunit A-like, transcript variant X2
53. FBXL18 ENSGALG00000004611 97 0.832 - - - - - - 0.832 - - - F-box and leucine rich repeat protein 18 [Source:NCBI gene;Acc:416484]
54. MAP3K1 ENSGALG00000014718 60 0.831 - - - - - - 0.831 - - - mitogen-activated protein kinase kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6848]
55. YTHDC1 ENSGALG00000035906 471 0.83 - - - - - - 0.830 - - - YTH domain containing 1 [Source:NCBI gene;Acc:422656]
56. TSPAN4 ENSGALG00000006837 150 0.83 - - - - - - 0.830 - - - tetraspanin 4 [Source:HGNC Symbol;Acc:HGNC:11859]
57. GUCA2A ENSGALG00000027269 4340 0.829 - - - - - - 0.829 - - - guanylate cyclase activator 2A [Source:NCBI gene;Acc:419498]
58. AGL ENSGALG00000005407 93 0.828 - - - - - - 0.828 - - - amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase [Source:HGNC Symbol;Acc:HGNC:321]
59. TTLL7 ENSGALG00000008850 49 0.827 - - - - - 0.827 - - - - tubulin tyrosine ligase like 7 [Source:HGNC Symbol;Acc:HGNC:26242]
60. FAM82B FAM82B 374 0.827 - - - - - - 0.827 - - -
61. RIPPLY2 ENSGALG00000015845 34 0.826 - - - - - - 0.826 - - - ripply transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:21390]
62. GPC5 ENSGALG00000016902 47 0.825 - - - - - 0.825 - - - - glypican 5 [Source:HGNC Symbol;Acc:HGNC:4453]
63. FAM76B ENSGALG00000017202 688 0.821 - - - - - - 0.821 - - - family with sequence similarity 76 member B [Source:HGNC Symbol;Acc:HGNC:28492]
64. CPNE1 ENSGALG00000040856 610 0.82 - - - - - - 0.820 - - - copine 1 [Source:NCBI gene;Acc:419134]
65. ENSGALG00000020753 ENSGALG00000020753 159 0.82 - - - - - - 0.820 - - -
66. HOXCDX1L ENSGALG00000007656 53 0.819 - - - - - - 0.819 - - - homeobox protein CDX-1-like
67. SNORD2 SNORD2 51 0.819 - - - - - - 0.819 - - -
68. ZC3H12B ENSGALG00000039391 39 0.819 - - 0.819 - - - - - - - zinc finger CCCH-type containing 12B [Source:HGNC Symbol;Acc:HGNC:17407]
69. PYROXD1 ENSGALG00000013173 89 0.818 - - - - - - 0.818 - - - pyridine nucleotide-disulphide oxidoreductase domain 1 [Source:NCBI gene;Acc:418191]
70. CPNE7 ENSGALG00000000507 54 0.816 - - - - - - 0.816 - - - copine 7 [Source:HGNC Symbol;Acc:HGNC:2320]
71. MAP3K21 ENSGALG00000011008 54 0.815 - - 0.815 - - - - - - - mitogen-activated protein kinase kinase kinase 21 [Source:HGNC Symbol;Acc:HGNC:29798]
72. NHP2 ENSGALG00000033666 17253 0.814 - - - - - - 0.814 - - - NHP2 ribonucleoprotein [Source:NCBI gene;Acc:416218]
73. PALM2 ENSGALG00000015655 20 0.814 - - - - - 0.814 - - - - paralemmin 2 [Source:HGNC Symbol;Acc:HGNC:15845]
74. PCGF2 ENSGALG00000018815 38 0.813 - - - - - - 0.813 - - - polycomb group ring finger 2 [Source:NCBI gene;Acc:425919]
75. NCOA6 ENSGALG00000001182 83 0.813 - - - - - - 0.813 - - - nuclear receptor coactivator 6 [Source:HGNC Symbol;Acc:HGNC:15936]
76. RAD54L2 ENSGALG00000003243 187 0.813 - - - - - 0.813 - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
77. TP53I3 ENSGALG00000016502 178 0.812 - - - - - - 0.812 - - - tumor protein p53 inducible protein 3 [Source:HGNC Symbol;Acc:HGNC:19373]
78. FAM21A FAM21A 251 0.81 - - - - - - 0.810 - - -
79. gga-mir-6703 ENSGALG00000029026 124 0.81 - - - - - 0.810 - - - - gga-mir-6703 [Source:miRBase;Acc:MI0022525]
80. ANKS1B ENSGALG00000011549 440 0.809 - - - - - - 0.809 - - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:NCBI gene;Acc:417927]
81. ZDHHC5 ENSGALG00000007362 296 0.809 - - - - - - 0.809 - - - zinc finger DHHC-type containing 5 [Source:NCBI gene;Acc:423130]
82. ENSGALG00000012463 ENSGALG00000012463 242 0.806 - - - - - - 0.806 - - -
83. P2RY1 ENSGALG00000010357 11 0.806 - - - - - 0.806 - - - - purinergic receptor P2Y1 [Source:NCBI gene;Acc:396275]
84. HTR2C ENSGALG00000005853 90 0.804 - - - - - - 0.804 - - - Gallus gallus 5-hydroxytryptamine receptor 2C (HTR2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318421]
85. GHDC ENSGALG00000003333 178 0.804 - - - - - - 0.804 - - - GH3 domain containing [Source:HGNC Symbol;Acc:HGNC:24438]
86. FANCA ENSGALG00000000516 250 0.803 - - - - - 0.803 - - - - Fanconi anemia complementation group A [Source:NCBI gene;Acc:415854]
87. HMGCS2 ENSGALG00000002960 54 0.803 - - - - - 0.803 - - - - 3-hydroxy-3-methylglutaryl-CoA synthase 2 [Source:HGNC Symbol;Acc:HGNC:5008]
88. ENSGALG00000001515 ENSGALG00000001515 833 0.802 - - - - - - 0.802 - - -
89. TOR4A ENSGALG00000008623 1364 0.802 - - - - - 0.802 - - - - torsin family 4 member A [Source:HGNC Symbol;Acc:HGNC:25981]
90. ATF3 ENSGALG00000025887 814 0.801 - - - - - - 0.801 - - - activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]
91. ACSF3 ENSGALG00000035225 261 0.8 - - - - - - 0.800 - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
92. CADM2 ENSGALG00000043393 810 0.8 - - - - - - 0.800 - - - cell adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:29849]
93. ANGPTL3 ENSGALG00000010978 335 0.799 - - - - - 0.799 - - - - angiopoietin like 3 [Source:NCBI gene;Acc:100189558]
94. ARHGAP39 ENSGALG00000001536 15 0.799 - - - - - 0.799 - - - - Rho GTPase activating protein 39, transcript variant X2
95. HINFP ENSGALG00000006806 15 0.799 - - - - - 0.799 - - - - histone H4 transcription factor [Source:HGNC Symbol;Acc:HGNC:17850]
96. SERPINA12 SERPINA12 3 0.799 - - - - - 0.799 - - - -
97. GPR88 ENSGALG00000005252 4 0.799 - - - - - 0.799 - - - - G protein-coupled receptor 88 [Source:HGNC Symbol;Acc:HGNC:4539]
98. GLOD5 ENSGALG00000025991 17 0.799 - - - - - 0.799 - - - - glyoxalase domain containing 5 [Source:HGNC Symbol;Acc:HGNC:33358]
99. ENSGALG00000028413 ENSGALG00000028413 551 0.799 - - - - - 0.799 - - - -
100. PDSS1 ENSGALG00000007559 432 0.797 - - - - - - 0.797 - - - Gallus gallus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001321600]

There are 184 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA