Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCDC3

Gene Name Gene ID Reads Annotation
CCDC3 ENSGALG00000030140 258 coiled-coil domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23813]











Genes with expression patterns similar to CCDC3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CCDC3 ENSGALG00000030140 258 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 coiled-coil domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23813]
2. C9H2ORF82 ENSGALG00000040264 4201 1.605 - - - - 0.701 - - - - 0.904 chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
3. OCA2 ENSGALG00000016740 421 1.584 - - - 0.729 - - - - - 0.855 OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
4. SLC6A1 ENSGALG00000004921 118 0.932 - - - - - - - - - 0.932 solute carrier family 6 member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
5. SERPINB14 SERPINB14 196 0.886 - - - - - - - - - 0.886
6. CCND2 ENSGALG00000017283 38 0.862 - - - - - 0.862 - - - - cyclin D2 [Source:NCBI gene;Acc:374047]
7. FNDC1 ENSGALG00000011663 1040 0.855 - - - - - - - - - 0.855 fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
8. COL23A1 ENSGALG00000006708 181 0.851 - - - - - - - - - 0.851 collagen type XXIII alpha 1 chain, transcript variant X1
9. PIK3C2G ENSGALG00000013117 53 0.849 - - - - - - - - - 0.849 phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
10. MYOG ENSGALG00000000172 460 0.848 - - - - - - - - - 0.848 myogenin [Source:NCBI gene;Acc:374004]
11. NCEH1 ENSGALG00000009170 8 0.835 - - 0.835 - - - - - - - neutral cholesterol ester hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:29260]
12. LRRTM1 ENSGALG00000015967 85 0.829 - - - 0.829 - - - - - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
13. SYDE2 ENSGALG00000038776 192 0.821 - - - - - - - - - 0.821 synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
14. ACAN ENSGALG00000006725 184 0.82 - - - - - - - - - 0.820 aggrecan [Source:NCBI gene;Acc:395798]
15. STXBP5L ENSGALG00000032361 41 0.819 - - - - - - - - - 0.819 syntaxin binding protein 5 like [Source:HGNC Symbol;Acc:HGNC:30757]
16. RBP4 ENSGALG00000015374 122 0.818 - - - - - 0.818 - - - - retinol binding protein 4 [Source:NCBI gene;Acc:396454]
17. GP130 GP130 42 0.817 - - - - - - - - - 0.817
18. TITIN TITIN 589 0.814 - - - - - - - - - 0.814
19. TMEM181 ENSGALG00000013737 19 0.812 - - 0.812 - - - - - - - transmembrane protein 181 [Source:HGNC Symbol;Acc:HGNC:20958]
20. PCDH17 ENSGALG00000016941 1006 0.806 - - - - - - - - - 0.806 protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
21. BF1 ENSGALG00000033932 18 0.804 - - - - - - - - - 0.804 MHC BF1 class I [Source:NCBI gene;Acc:693260]
22. ENSGALG00000026222 ENSGALG00000026222 3 0.804 - - - - - - - - - 0.804
23. VIPR1 ENSGALG00000005259 3 0.804 - - - - - - - - - 0.804 vasoactive intestinal peptide receptor 1 [Source:NCBI gene;Acc:395329]
24. XKRX ENSGALG00000006637 13 0.804 - - - - - - - - - 0.804 XK related, X-linked, transcript variant X4
25. CUBN ENSGALG00000008704 21 0.804 - - - - - - - - - 0.804 cubilin [Source:HGNC Symbol;Acc:HGNC:2548]
26. CKV6.3 CKV6.3 13 0.804 - - - - - - - - - 0.804
27. SNORA53 SNORA53 6 0.804 - - - - - - - - - 0.804
28. LYG2 ENSGALG00000016761 7 0.804 - - - - - - - - - 0.804 lysozyme g2 [Source:NCBI gene;Acc:395708]
29. COL25A1 ENSGALG00000039411 5 0.804 - - - - - - - - - 0.804 collagen type XXV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:18603]
30. APBB1IP ENSGALG00000007579 30 0.803 - - - - - - - - - 0.803 amyloid beta precursor protein binding family B member 1 interacting protein [Source:NCBI gene;Acc:420492]
31. PEAK1 ENSGALG00000002759 39 0.802 - - - - - - - - - 0.802 pseudopodium enriched atypical kinase 1 [Source:NCBI gene;Acc:100857260]
32. PRLL ENSGALG00000009603 30 0.799 - - 0.799 - - - - - - - prolactin-like protein [Source:NCBI gene;Acc:417800]
33. PTCHD3 ENSGALG00000023347 5 0.796 - - 0.796 - - - - - - - patched domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24776]
34. DENND1B ENSGALG00000002246 6 0.796 - - 0.796 - - - - - - - DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
35. ENSGALG00000001345 ENSGALG00000001345 5 0.796 - - 0.796 - - - - - - -
36. OPRK1 ENSGALG00000015269 1 0.796 - - 0.796 - - - - - - - Gallus gallus opioid receptor kappa 1 (OPRK1), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001318774]
37. CISH ENSGALG00000002260 1 0.796 - - 0.796 - - - - - - - cytokine inducible SH2 containing protein [Source:NCBI gene;Acc:395335]
38. RAB17 ENSGALG00000003899 1 0.796 - - 0.796 - - - - - - - RAB17, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16523]
39. BPIFB6 ENSGALG00000006674 1 0.796 - - 0.796 - - - - - - - BPI fold containing family B member 6 [Source:HGNC Symbol;Acc:HGNC:16504]
40. ENSGALG00000009151 ENSGALG00000009151 6 0.796 - - 0.796 - - - - - - -
41. OGFR ENSGALG00000005609 3 0.796 - - 0.796 - - - - - - - opioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]
42. FAM155B ENSGALG00000041437 1 0.796 - - 0.796 - - - - - - - family with sequence similarity 155 member B [Source:HGNC Symbol;Acc:HGNC:30701]
43. TRIM50 ENSGALG00000021696 1 0.796 - - 0.796 - - - - - - - tripartite motif containing 50 [Source:HGNC Symbol;Acc:HGNC:19017]
44. FAM19A2 ENSGALG00000019361 3 0.796 - - 0.796 - - - - - - - family with sequence similarity 19 member A2, C-C motif chemokine like [Source:HGNC Symbol;Acc:HGNC:21589]
45. KCNRG ENSGALG00000017012 4 0.796 - - 0.796 - - - - - - - potassium channel regulator [Source:HGNC Symbol;Acc:HGNC:18893]
46. LOC427545 ENSGALG00000004428 3 0.796 - - 0.796 - - - - - - - histamine H3 receptor-like
47. ENSGALG00000000382 ENSGALG00000000382 2 0.796 - - 0.796 - - - - - - -
48. U5 U5 1 0.796 - - 0.796 - - - - - - -
49. SNORA63 SNORA63 2 0.796 - - 0.796 - - - - - - -
50. ENSGALG00000001724 ENSGALG00000001724 1 0.796 - - 0.796 - - - - - - -
51. MCMDC2 ENSGALG00000031863 3 0.796 - - 0.796 - - - - - - - minichromosome maintenance domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26368]
52. SLCO2B1 ENSGALG00000017302 239 0.795 - - - - - 0.795 - - - - solute carrier organic anion transporter family member 2B1 [Source:HGNC Symbol;Acc:HGNC:10962]
53. BMPR-II BMPR-II 33 0.794 - - - - - - - - - 0.794
54. SPON2 ENSGALG00000038433 1240 0.793 - - - - - - - - - 0.793 spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
55. ZNF507 ENSGALG00000004532 78 0.793 - - - - - 0.793 - - - - zinc finger protein 507, transcript variant X2
56. PALMD ENSGALG00000005442 901 0.791 - - - - - - - - - 0.791 palmdelphin [Source:NCBI gene;Acc:424475]
57. RAPSN ENSGALG00000008100 53 0.789 - - - - - - - - - 0.789 receptor associated protein of the synapse [Source:NCBI gene;Acc:395986]
58. THAP1 ENSGALG00000015385 15 0.788 - - 0.788 - - - - - - - THAP domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20856]
59. HHLA2 ENSGALG00000022871 19 0.788 - - 0.788 - - - - - - - HERV-H LTR-associating 2 [Source:HGNC Symbol;Acc:HGNC:4905]
60. USB1 ENSGALG00000035604 4003 0.788 - - - - - 0.788 - - - - U6 snRNA biogenesis phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:25792]
61. C4orf21 C4orf21 479 0.788 - - - - - 0.788 - - - -
62. EML4 ENSGALG00000009915 628 0.788 - - - - - - - - - 0.788 echinoderm microtubule associated protein like 4 [Source:HGNC Symbol;Acc:HGNC:1316]
63. SLC22A3 ENSGALG00000020002 4 0.788 - - 0.788 - - - - - - - solute carrier family 22 member 3 [Source:HGNC Symbol;Acc:HGNC:10967]
64. CARD9 ENSGALG00000001889 83 0.785 - - - - - - - - - 0.785 caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
65. GABRB4 GABRB4 12 0.785 - - - - - - - - - 0.785
66. MANSC4 32 0.785 - - - - - - - - - 0.785 MANSC domain containing 4, transcript variant X1
67. IKZF1 ENSGALG00000013086 58 0.785 - - - - - - - - - 0.785 IKAROS family zinc finger 1 [Source:NCBI gene;Acc:395974]
68. ENTPD5 ENSGALG00000010202 69 0.781 - - - - - - - - - 0.781 ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
69. SRL ENSGALG00000038884 19 0.781 - - - - - - - - - 0.781 sarcalumenin [Source:NCBI gene;Acc:396269]
70. USP38 ENSGALG00000009886 89 0.781 - - - - - - - - - 0.781 ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]
71. FAP ENSGALG00000011099 34 0.78 - - - - - 0.780 - - - - fibroblast activation protein alpha [Source:NCBI gene;Acc:424186]
72. COL9A3 ENSGALG00000005628 2842 0.779 - - - - - - - - - 0.779 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
73. AQP3 ENSGALG00000002452 97 0.779 - - - - - - - - - 0.779 aquaporin 3 (Gill blood group) [Source:HGNC Symbol;Acc:HGNC:636]
74. SORL1 ENSGALG00000006598 39 0.779 - - - - - - - - - 0.779 sortilin related receptor 1 [Source:NCBI gene;Acc:395998]
75. DNAH5L ENSGALG00000013268 61 0.776 - - - - - 0.776 - - - - dynein axonemal heavy chain 5-like
76. AREG ENSGALG00000010866 16 0.776 - - - - - - - - - 0.776 amphiregulin [Source:NCBI gene;Acc:428752]
77. PDE5A ENSGALG00000011982 99 0.773 - - - - - 0.773 - - - - Gallus gallus phosphodiesterase 5A (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001319020]
78. ARHGEF10 ENSGALG00000016350 151 0.771 - - - - - - - 0.771 - - Rho guanine nucleotide exchange factor 10 [Source:HGNC Symbol;Acc:HGNC:14103]
79. FAM126B ENSGALG00000020869 19 0.771 - - - - - - - - - 0.771 family with sequence similarity 126 member B [Source:HGNC Symbol;Acc:HGNC:28593]
80. CCDC39 ENSGALG00000021855 23 0.769 - - - - - - - - - 0.769 coiled-coil domain containing 39
81. GABRD ENSGALG00000001282 8 0.768 - - - - - - - - - 0.768 gamma-aminobutyric acid type A receptor delta subunit [Source:HGNC Symbol;Acc:HGNC:4084]
82. TWIST1 ENSGALG00000041640 1176 0.768 - - - - - - - - - 0.768 twist family bHLH transcription factor 1 [Source:NCBI gene;Acc:395491]
83. SERPINF1 ENSGALG00000003015 5123 0.768 - - - - - - - - - 0.768 serpin family F member 1 [Source:NCBI gene;Acc:417561]
84. PLCZ1 ENSGALG00000013123 3 0.767 - - - - - 0.767 - - - - phospholipase C zeta 1 [Source:NCBI gene;Acc:418182]
85. ADAMTS12 55 0.767 - - - - - 0.767 - - - - ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
86. FTO ENSGALG00000041036 11 0.767 - - - - - 0.767 - - - - FTO, alpha-ketoglutarate dependent dioxygenase [Source:NCBI gene;Acc:415718]
87. SMOX ENSGALG00000015977 18 0.767 - - - - - 0.767 - - - - spermine oxidase [Source:HGNC Symbol;Acc:HGNC:15862]
88. ENSGALG00000004619 ENSGALG00000004619 3 0.767 - - - - - 0.767 - - - -
89. NSUN7 ENSGALG00000014264 4 0.767 - - - - - 0.767 - - - - NOP2/Sun RNA methyltransferase family member 7 [Source:HGNC Symbol;Acc:HGNC:25857]
90. SLC35F5 ENSGALG00000012166 25 0.767 - - - - - 0.767 - - - - solute carrier family 35 member F5 [Source:HGNC Symbol;Acc:HGNC:23617]
91. ENSGALG00000007846 ENSGALG00000007846 2 0.767 - - - - - 0.767 - - - -
92. C21orf62 ENSGALG00000040059 5 0.767 - - - - - 0.767 - - - - chromosome 21 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:1305]
93. ENSGALG00000006504 ENSGALG00000006504 3 0.767 - - - - - 0.767 - - - -
94. STEAP1 ENSGALG00000009006 16 0.767 - - - - - 0.767 - - - - STEAP family member 1
95. FRRS1 ENSGALG00000005418 332 0.766 - - - - - - - - - 0.766 ferric chelate reductase 1 [Source:HGNC Symbol;Acc:HGNC:27622]
96. ZBTB41 ENSGALG00000002305 97 0.765 - - - - - 0.765 - - - - zinc finger and BTB domain containing 41, transcript variant X2
97. ENSGALG00000001131 ENSGALG00000001131 14 0.765 - - - - - - 0.765 - - -
98. SNORA17 SNORA17 39 0.765 - - - - - - - - - 0.765
99. CYR61 ENSGALG00000008661 43 0.764 - - - - - 0.764 - - - - cysteine rich angiogenic inducer 61 [Source:NCBI gene;Acc:429089]
100. ZFAT ENSGALG00000037698 34 0.764 - - - - - - - - - 0.764 zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]

There are 84 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA