Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CCDC28A

Gene Name Gene ID Reads Annotation
CCDC28A ENSGALG00000013834 8 coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:HGNC:21098]











Genes with expression patterns similar to CCDC28A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CCDC28A ENSGALG00000013834 8 4 - - 1.000 1.000 - 1.000 - 1.000 - - coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:HGNC:21098]
2. TMEM132D ENSGALG00000002671 12 1.981 - - - - - 1.000 - 0.981 - - transmembrane protein 132D, transcript variant X6
3. ALK 2 1.981 - - - - - 1.000 - 0.981 - - anaplastic lymphoma receptor tyrosine kinase, transcript variant X3
4. ENTPD5 ENSGALG00000010202 69 1.914 - - - - - 0.938 - 0.976 - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
5. NRG3 ENSGALG00000042812 10 1.704 - - 0.704 - - 1.000 - - - - neuregulin 3 [Source:HGNC Symbol;Acc:HGNC:7999]
6. HIAT1 HIAT1 447 1 - - - - - 1.000 - - - -
7. PASD1 ENSGALG00000009063 0 1 - - - - - 1.000 - - - - PAS domain containing repressor 1, transcript variant X4
8. ENSGALG00000028833 ENSGALG00000028833 0 1 - - - - - 1.000 - - - -
9. WDR37 ENSGALG00000006749 44 1 - - - - - 1.000 - - - - WD repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:31406]
10. NMBR ENSGALG00000013813 15 1 - - - 1.000 - - - - - - neuromedin B receptor [Source:HGNC Symbol;Acc:HGNC:7843]
11. NT5DC3 ENSGALG00000029746 1 1 - - - - - 1.000 - - - - 5'-nucleotidase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30826]
12. IL17RA ENSGALG00000033887 0 1 - - - - - 1.000 - - - - Gallus gallus interleukin 17 receptor A (IL17RA), mRNA. [Source:RefSeq mRNA;Acc:NM_001318988]
13. ENSGALG00000013992 ENSGALG00000013992 6 1 - - - - - 1.000 - - - -
14. gga-mir-6544 ENSGALG00000027916 19 1 - - - 1.000 - - - - - - gga-mir-6544 [Source:miRBase;Acc:MI0022360]
15. HABP2 ENSGALG00000008905 1 1 - - - - - 1.000 - - - - hyaluronan binding protein 2 [Source:NCBI gene;Acc:423898]
16. VPS9D1 ENSGALG00000023468 1 1 - - - - - 1.000 - - - - VPS9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13526]
17. CRCBL ENSGALG00000025881 3 1 - - - - - 1.000 - - - - cytokine receptor common subunit beta-like, transcript variant X3
18. SNORD61 SNORD61 12 1 - - - - - 1.000 - - - -
19. TMEM161B ENSGALG00000010896 36 1 - - - - - 1.000 - - - - transmembrane protein 161B [Source:HGNC Symbol;Acc:HGNC:28483]
20. TBC1D24L ENSGALG00000001244 2 1 - - - 1.000 - - - - - - TBC1 domain family member 24-like, transcript variant X2
21. INTS3 8 1 - - - - - 1.000 - - - - integrator complex subunit 3, transcript variant X2
22. TMEM201 ENSGALG00000002527 2 1 - - - 1.000 - - - - - - transmembrane protein 201
23. DAPK1 ENSGALG00000012608 17 1 - - - - - 1.000 - - - - death-associated protein kinase 1 [Source:NCBI gene;Acc:431670]
24. CD5 ENSGALG00000031735 3 1 - - - - - 1.000 - - - - CD5 molecule [Source:NCBI gene;Acc:395757]
25. CA12 ENSGALG00000003456 62 1 - - - - - 1.000 - - - - carbonic anhydrase 12 [Source:HGNC Symbol;Acc:HGNC:1371]
26. C12orf50 ENSGALG00000045093 9 1 - - - - - 1.000 - - - - chromosome 12 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26665]
27. SNORA50 SNORA50 9 1 - - - 1.000 - - - - - -
28. TRPM1 ENSGALG00000003849 5 1 - - - - - 1.000 - - - - transient receptor potential cation channel subfamily M member 1 [Source:HGNC Symbol;Acc:HGNC:7146]
29. FAM194B FAM194B 1 1 - - - - - 1.000 - - - -
30. PITPNA ENSGALG00000023806, ENSGALG00000035005 8 1 - - - - - 1.000 - - - - phosphatidylinositol transfer protein alpha [Source:HGNC Symbol;Acc:HGNC:9001]
31. APBB1 ENSGALG00000046164 5 1 - - - - - 1.000 - - - - amyloid beta precursor protein binding family B member 1 [Source:HGNC Symbol;Acc:HGNC:581]
32. LOC422320 ENSGALG00000007703 6 1 - - - - - 1.000 - - - - ligand of Numb protein X 2-like, transcript variant X1
33. FAM46C 13 1 - - - - - 1.000 - - - - family with sequence similarity 46 member C
34. STAM2 ENSGALG00000012513 9 1 - - - - - 1.000 - - - - signal transducing adaptor molecule 2 [Source:NCBI gene;Acc:424317]
35. GRM5 ENSGALG00000017238 2 1 - - - - - 1.000 - - - - glutamate receptor, metabotropic 5 [Source:NCBI gene;Acc:373933]
36. THBD ENSGALG00000044442 6 1 - - - - - 1.000 - - - - thrombomodulin
37. CCDC178 6 1 - - - - - 1.000 - - - - coiled-coil domain containing 178, transcript variant X3
38. CLDN16 ENSGALG00000025821 14 1 - - - - - 1.000 - - - - claudin 16 [Source:HGNC Symbol;Acc:HGNC:2037]
39. PLSCR5 ENSGALG00000006807 9 1 - - - 1.000 - - - - - - phospholipid scramblase family member 5 [Source:HGNC Symbol;Acc:HGNC:19952]
40. ONECUT3 ENSGALG00000028081 1 1 - - - - - 1.000 - - - - one cut homeobox 3 [Source:HGNC Symbol;Acc:HGNC:13399]
41. gga-mir-219b ENSGALG00000018278 1 1 - - - - - 1.000 - - - - gga-mir-219b [Source:miRBase;Acc:MI0015382]
42. FNIP1 ENSGALG00000017462 4 1 - - - - - 1.000 - - - - folliculin interacting protein 1 [Source:NCBI gene;Acc:427642]
43. NGB ENSGALG00000010413 0 1 - - - - - 1.000 - - - - neuroglobin [Source:NCBI gene;Acc:428896]
44. GZMA ENSGALG00000013548 22 1 - - - - - 1.000 - - - - granzyme A [Source:NCBI gene;Acc:395108]
45. 5S 5S 0 1 - - - - - 1.000 - - - -
46. TLL2 ENSGALG00000005519 10 1 - - - - - 1.000 - - - - tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:11844]
47. gga-mir-6659 ENSGALG00000028216 6 1 - - - 1.000 - - - - - - gga-mir-6659 [Source:miRBase;Acc:MI0022479]
48. CASZ1 ENSGALG00000002888 2 1 - - - - - 1.000 - - - - castor zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:26002]
49. PSEN2 ENSGALG00000009073 7 1 - - - - - 1.000 - - - - presenilin 2 (Alzheimer disease 4) [Source:NCBI gene;Acc:374188]
50. MMP9 ENSGALG00000006992 78 1 - - - - - 1.000 - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
51. SNX19 ENSGALG00000001425 2 1 - - - - - 1.000 - - - - sorting nexin 19 [Source:HGNC Symbol;Acc:HGNC:21532]
52. TLR7 ENSGALG00000016590 6 1 - - - 1.000 - - - - - - toll like receptor 7 [Source:NCBI gene;Acc:418638]
53. FAM151B ENSGALG00000015577 11 1 - - - 1.000 - - - - - - family with sequence similarity 151 member B
54. LRRC9 2 1 - - - - - 1.000 - - - - leucine rich repeat containing 9
55. RAB43 ENSGALG00000005021 5 1 - - - - - 1.000 - - - - RAB43, member RAS oncogene family [Source:NCBI gene;Acc:415970]
56. TEX33 ENSGALG00000012490 11 1 - - - - - 1.000 - - - - testis expressed 33, transcript variant X2
57. ASPR ASPR 1 1 - - - - - 1.000 - - - -
58. MFHAS1 ENSGALG00000011444 7 1 - - - - - 1.000 - - - - malignant fibrous histiocytoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:16982]
59. NADSYN1 ENSGALG00000004153 8 1 - - - - - 1.000 - - - - NAD synthetase 1 [Source:NCBI gene;Acc:422983]
60. GDPGP1 ENSGALG00000045045 2 1 - - - - - 1.000 - - - - GDP-D-glucose phosphorylase 1
61. CNNM1 ENSGALG00000007489 43 1 - - - - - 1.000 - - - - cyclin and CBS domain divalent metal cation transport mediator 1 [Source:HGNC Symbol;Acc:HGNC:102]
62. ENSGALG00000023638 ENSGALG00000023638 16 1 - - - - - 1.000 - - - -
63. CASS4 ENSGALG00000007744 10 1 - - - - - 1.000 - - - - Cas scaffold protein family member 4 [Source:HGNC Symbol;Acc:HGNC:15878]
64. IAPP ENSGALG00000013168 1 1 - - - - - 1.000 - - - - islet amyloid polypeptide [Source:NCBI gene;Acc:396362]
65. CHAT ENSGALG00000002289 26 1 - - - - - 1.000 - - - - choline O-acetyltransferase [Source:NCBI gene;Acc:395314]
66. FAT2 ENSGALG00000004320 4 1 - - - - - 1.000 - - - - FAT atypical cadherin 2 [Source:HGNC Symbol;Acc:HGNC:3596]
67. RNFT2 ENSGALG00000008217 0 1 - - - - - 1.000 - - - - ring finger protein, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25905]
68. QSOX1 ENSGALG00000003933 184 1 - - - - - 1.000 - - - - quiescin Q6 sulfhydryl oxidase 1 [Source:NCBI gene;Acc:373914]
69. ENSGALG00000021106 ENSGALG00000021106 35 1 - - - - - 1.000 - - - -
70. ENSGALG00000009485 ENSGALG00000009485 4 1 - - - - - 1.000 - - - -
71. NFATC3 ENSGALG00000003396 40 1 - - - - - 1.000 - - - - nuclear factor of activated T cells 3 [Source:HGNC Symbol;Acc:HGNC:7777]
72. ABLIM2 ENSGALG00000043448 48 0.989 - - - - - - - 0.989 - - actin binding LIM protein family member 2 [Source:HGNC Symbol;Acc:HGNC:19195]
73. CCL1 ENSGALG00000002329 2 0.981 - - - - - - - 0.981 - - C-C motif chemokine ligand 1 [Source:NCBI gene;Acc:395552]
74. F13A1 ENSGALG00000012802 16 0.981 - - - - - - - 0.981 - - coagulation factor XIII A chain [Source:NCBI gene;Acc:395420]
75. NARS2 ENSGALG00000017262 12 0.981 - - - - - - - 0.981 - - asparaginyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:26274]
76. APOB ENSGALG00000016491 34 0.981 - - - - - - - 0.981 - - apolipoprotein B [Source:NCBI gene;Acc:396535]
77. NR0B2 ENSGALG00000000887 2 0.981 - - - - - - - 0.981 - - nuclear receptor subfamily 0 group B member 2 [Source:NCBI gene;Acc:768353]
78. ENSGALG00000013409 ENSGALG00000013409 4 0.981 - - - - - - - 0.981 - -
79. RAPSN ENSGALG00000008100 53 0.981 - - - - - - - 0.981 - - receptor associated protein of the synapse [Source:NCBI gene;Acc:395986]
80. TRNAU1AP ENSGALG00000001310 7 0.981 - - - - - - - 0.981 - - tRNA selenocysteine 1 associated protein 1, transcript variant X4
81. SAPCD2 12 0.981 - - - - - - - 0.981 - - suppressor APC domain containing 2, transcript variant X1
82. MBD5 ENSGALG00000012449 27 0.98 - - - - - - - 0.980 - - methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
83. FAM171A1 ENSGALG00000008764 349 0.979 - - - - - - - 0.979 - - family with sequence similarity 171 member A1 [Source:HGNC Symbol;Acc:HGNC:23522]
84. OSMR ENSGALG00000003747 4 0.978 - - - - - - - 0.978 - - oncostatin M receptor [Source:HGNC Symbol;Acc:HGNC:8507]
85. SLC25A42 ENSGALG00000002621 6 0.977 - - - - - 0.977 - - - - solute carrier family 25 member 42 [Source:HGNC Symbol;Acc:HGNC:28380]
86. ENSGALG00000005812 ENSGALG00000005812 40 0.976 - - - - - - - 0.976 - -
87. DHTKD1 ENSGALG00000003674 300 0.972 - - - - - - - 0.972 - - dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
88. S100A13 ENSGALG00000046614 201 0.971 - - - - - - - 0.971 - - S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]
89. MBOAT2 ENSGALG00000016412 194 0.965 - - - - - - - 0.965 - - membrane bound O-acyltransferase domain containing 2 [Source:NCBI gene;Acc:421925]
90. ARHGAP28 ENSGALG00000014758 34 0.958 - - - - - - - 0.958 - - Rho GTPase activating protein 28 [Source:HGNC Symbol;Acc:HGNC:25509]
91. CD164 30 0.958 - - - - - - - 0.958 - - CD164 molecule, transcript variant X2
92. SGPP2 ENSGALG00000005245 20 0.955 - - 0.955 - - - - - - - sphingosine-1-phosphate phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:19953]
93. AAK1 ENSGALG00000041911 16 0.951 - - - - - - - 0.951 - - AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
94. SUGP2 ENSGALG00000003047 227 0.951 - - - - - - - 0.951 - - SURP and G-patch domain containing 2 [Source:NCBI gene;Acc:420113]
95. YWHAG ENSGALG00000017358 203 0.945 - - - - - - - 0.945 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma [Source:NCBI gene;Acc:427820]
96. ACOT9 ENSGALG00000016351 330 0.944 - - - - - - - 0.944 - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
97. FADS2 ENSGALG00000007178 116 0.94 - - - - - - - 0.940 - - fatty acid desaturase 2 [Source:NCBI gene;Acc:423122]
98. SS18L1 ENSGALG00000005145 14 0.94 - - - - - - - 0.940 - - SS18L1, nBAF chromatin remodeling complex subunit [Source:HGNC Symbol;Acc:HGNC:15592]
99. MICALL2 ENSGALG00000004070 23 0.938 - - - - - 0.938 - - - - MICAL like 2 [Source:HGNC Symbol;Acc:HGNC:29672]
100. PGAM1 ENSGALG00000007606 384 0.938 - - - - - - - 0.938 - - phosphoglycerate mutase 1 [Source:NCBI gene;Acc:428969]

There are 111 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA