Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for BRIX1

Gene Name Gene ID Reads Annotation
BRIX1 ENSGALG00000003373 27878 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]











Genes with expression patterns similar to BRIX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. BRIX1 ENSGALG00000003373 27878 9 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
2. ARGLU1 ENSGALG00000016855 25633 1.664 - - - - 0.793 - 0.871 - - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
3. TBL1X ENSGALG00000040006 28597 1.645 - - - - 0.741 - 0.904 - - - transducin beta like 1 X-linked [Source:NCBI gene;Acc:426045]
4. ZDHHC6 ENSGALG00000008870 16575 1.606 - - - - 0.710 - 0.896 - - - zinc finger DHHC-type containing 6 [Source:HGNC Symbol;Acc:HGNC:19160]
5. HP1BP3 ENSGALG00000010079 33723 1.602 - - - - 0.776 - - - - 0.826 heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
6. ST13 ENSGALG00000012007 25670 0.962 - - - - - - 0.962 - - - ST13, Hsp70 interacting protein [Source:NCBI gene;Acc:418003]
7. CKAP4 ENSGALG00000012659 36398 0.936 - - - - - - 0.936 - - - cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
8. HNRNPU ENSGALG00000010671 56560 0.922 - - - - - - 0.922 - - - heterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]
9. UBE2N ENSGALG00000030515 32059 0.92 - - - - - - 0.920 - - - ubiquitin conjugating enzyme E2 N [Source:NCBI gene;Acc:417898]
10. RPS25 ENSGALG00000007699 156127 0.913 - - - - - - 0.913 - - - ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
11. BUB3 ENSGALG00000009681 36055 0.903 - - - - - - 0.903 - - - BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
12. HDLBP ENSGALG00000005823 24636 0.899 - - - - - - 0.899 - - - high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
13. PELI1 ENSGALG00000008837 11561 0.898 - - - - - - 0.898 - - - pellino E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421279]
14. NDUFA11 ENSGALG00000021692 75804 0.893 - - - - - - 0.893 - - - NADH:ubiquinone oxidoreductase subunit A11
15. SNRPB2 28675 0.893 - - - - - - 0.893 - - - small nuclear ribonucleoprotein polypeptide B2
16. PRDX1 ENSGALG00000010243 151918 0.888 - - - - - - 0.888 - - - peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
17. CCT5 ENSGALG00000013041 56190 0.884 - - - - - - 0.884 - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
18. ENSGALG00000000360 ENSGALG00000000360 15320 0.881 - - - - - - 0.881 - - -
19. ENSGALG00000013825 ENSGALG00000013825 16473 0.879 - - - - - - 0.879 - - -
20. SEC61G ENSGALG00000037863 83362 0.877 - - - - - - 0.877 - - - Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
21. MRPS26 ENSGALG00000014118 27422 0.87 - - - - - - 0.870 - - - mitochondrial ribosomal protein S26 [Source:NCBI gene;Acc:426561]
22. RPF1 ENSGALG00000008796 9809 0.868 - - - - - - 0.868 - - - ribosome production factor 1 homolog
23. MRPS36 ENSGALG00000014789 7584 0.864 - - - - - - 0.864 - - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
24. TRA2A ENSGALG00000010973 37101 0.864 - - - - - - 0.864 - - - transformer 2 alpha homolog [Source:NCBI gene;Acc:420618]
25. WLS ENSGALG00000011238 20969 0.861 - - - - - - 0.861 - - - wntless Wnt ligand secretion mediator [Source:NCBI gene;Acc:424707]
26. U2AF1 ENSGALG00000016198 45027 0.853 - - - - 0.853 - - - - - U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
27. CDC5L ENSGALG00000016704 22893 0.852 - - - - - - 0.852 - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
28. ABRACL ENSGALG00000013826 19445 0.848 - - - - - - 0.848 - - - ABRA C-terminal like [Source:NCBI gene;Acc:770205]
29. MOB4 ENSGALG00000008128 10322 0.846 - - - - - - 0.846 - - - MOB family member 4, phocein [Source:NCBI gene;Acc:429007]
30. CNBP 42704 0.841 - - - - - - 0.841 - - - CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
31. RNF13 ENSGALG00000010411 8749 0.84 - - - - - - 0.840 - - - ring finger protein 13 [Source:NCBI gene;Acc:396303]
32. ACTR6 ENSGALG00000040976 31271 0.839 - - - - - - 0.839 - - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
33. MRPS15 ENSGALG00000044433 15356 0.833 - - - - - - 0.833 - - - mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
34. PPP3CB ENSGALG00000005243 8794 0.832 - - - - - - 0.832 - - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
35. CCAR1 ENSGALG00000004108 13219 0.827 - - - - - - 0.827 - - - cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
36. MRPS34 ENSGALG00000001792 14262 0.823 - - - - - - 0.823 - - - mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
37. NOB1 ENSGALG00000000693 15442 0.822 - - - - - - 0.822 - - - NIN1 (RPN12) binding protein 1 homolog [Source:HGNC Symbol;Acc:HGNC:29540]
38. COMMD8 ENSGALG00000026279 13509 0.818 - - - - - - 0.818 - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
39. SERBP1 ENSGALG00000011229 30489 0.817 - - - - - - 0.817 - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
40. CTNNBL1 ENSGALG00000006817 6765 0.817 - - - - - - 0.817 - - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
41. POLR2C ENSGALG00000001168 10703 0.816 - - - - - - 0.816 - - - RNA polymerase II subunit C [Source:NCBI gene;Acc:415635]
42. USO1 ENSGALG00000010878 9506 0.812 - - - - - - 0.812 - - - USO1 vesicle transport factor [Source:NCBI gene;Acc:422575]
43. FGD5 ENSGALG00000008546 4031 0.811 - - - - - - 0.811 - - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
44. TTF1 4214 0.811 - - - - - - 0.811 - - - transcription termination factor 1
45. POLB ENSGALG00000040828 7462 0.809 - - - - - - 0.809 - - - DNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]
46. TPI1 ENSGALG00000014526 43273 0.808 - - - - - - 0.808 - - - triosephosphate isomerase 1 [Source:NCBI gene;Acc:396435]
47. RPL29 ENSGALG00000026978 271790 0.808 - - - - - - 0.808 - - - ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. MYBL2 ENSGALG00000003503 15875 0.808 - - - - - - 0.808 - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
49. FHL3 ENSGALG00000035187 9753 0.804 - - - - - - 0.804 - - - four and a half LIM domains 3 [Source:HGNC Symbol;Acc:HGNC:3704]
50. LOC424109 ENSGALG00000008738 3932 0.803 - - - - - - 0.803 - - - alpha-aspartyl dipeptidase
51. SPINT1 ENSGALG00000008469 5735 0.802 - - - - - - 0.802 - - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
52. EXOSC7 ENSGALG00000030084 8654 0.802 - - - - - - 0.802 - - - exosome component 7 [Source:NCBI gene;Acc:420704]
53. GALNTL4 GALNTL4 3548 0.801 - - - - - - 0.801 - - -
54. ANLN 10479 0.8 - - - - - - 0.800 - - - anillin actin binding protein, transcript variant X2
55. EPHA3 ENSGALG00000015403 9811 0.8 - - - - - - 0.800 - - - EPH receptor A3 [Source:NCBI gene;Acc:396402]
56. CALM CALM 85776 0.796 - - - - 0.796 - - - - -
57. GCAT ENSGALG00000012312 7906 0.795 - - - - - - 0.795 - - - glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
58. APITD1 APITD1 11830 0.794 - - - - - - 0.794 - - -
59. C6H10ORF32 C6H10ORF32 7694 0.793 - - - - - - 0.793 - - -
60. PSMD13 ENSGALG00000043684 14720 0.792 - - - - - - 0.792 - - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
61. MMADHC ENSGALG00000012473 9026 0.791 - - - - - - 0.791 - - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
62. GLT8D1 ENSGALG00000001642 4232 0.79 - - - - - - 0.790 - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
63. SUMO2 ENSGALG00000007971 46283 0.79 - - - - 0.790 - - - - - small ubiquitin-like modifier 2 [Source:NCBI gene;Acc:770125]
64. CCDC90B ENSGALG00000037072 5088 0.789 - - - - - - 0.789 - - - coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
65. ENSGALG00000020092 ENSGALG00000020092 3067 0.789 - - - - - - - - - 0.789
66. EZH2 ENSGALG00000043399 15881 0.789 - - - - - - 0.789 - - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
67. DDX18 ENSGALG00000012147 12463 0.788 - - - - - - 0.788 - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
68. PRKG1 ENSGALG00000003805 4654 0.788 - - - - - - 0.788 - - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
69. DIS3 ENSGALG00000016930 3696 0.786 - - - - - - 0.786 - - - DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
70. gga-mir-1723 ENSGALG00000025386 6662 0.785 - - - - - - 0.785 - - - gga-mir-1723 [Source:miRBase;Acc:MI0007460]
71. ZNF639 ENSGALG00000005944 6387 0.785 - - - - - - - - - 0.785 zinc finger protein 639 [Source:NCBI gene;Acc:425280]
72. CHPKCI CHPKCI 36217 0.784 - - - - - - 0.784 - - -
73. ENSGALG00000006730 ENSGALG00000006730 3695 0.781 - - - - - - 0.781 - - -
74. LIMCH1 ENSGALG00000014258 1987 0.778 - - - - - - - - - 0.778 LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
75. SH3RF3 ENSGALG00000016810 2169 0.778 - - - - - - 0.778 - - - SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]
76. LOC407092 ENSGALG00000013809 10706 0.776 - - - - - - 0.776 - - - AD012Z, transcript variant X5
77. TP53INP1 ENSGALG00000041353 6890 0.775 - - - - - - 0.775 - - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
78. ZNF276 ENSGALG00000000513 2410 0.775 - - - - - - 0.775 - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
79. LOC425795 ENSGALG00000027696 2357 0.774 - - - - - - 0.774 - - - ectoderm-neural cortex protein 1-like, transcript variant X1
80. TCEB3 ENSGALG00000034625 184577 0.772 - - - - 0.772 - - - - - transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. SAV1 ENSGALG00000012341 3313 0.771 - - - - - - 0.771 - - - salvador family WW domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:17795]
82. CHL1 ENSGALG00000037856 1565 0.77 - - - - - - 0.770 - - - cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
83. VDAC3 ENSGALG00000041463 21595 0.769 - - - - - - 0.769 - - - voltage dependent anion channel 3, transcript variant X9
84. TTC27 ENSGALG00000010538 9685 0.769 - - - - - - - 0.769 - - tetratricopeptide repeat domain 27 [Source:NCBI gene;Acc:421462]
85. ATPAF2 ENSGALG00000004926 3393 0.769 - - - - - - 0.769 - - - ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:18802]
86. SNAPIN ENSGALG00000026796 11155 0.767 - - - - - - 0.767 - - - SNAP associated protein [Source:HGNC Symbol;Acc:HGNC:17145]
87. TRIB2 ENSGALG00000016457 17641 0.766 - - - - - - 0.766 - - - tribbles pseudokinase 2 [Source:NCBI gene;Acc:378919]
88. CRAC1A CRAC1A 5265 0.766 - - - - - - 0.766 - - -
89. STAG2 ENSGALG00000008482 13629 0.766 - - - - - - 0.766 - - - stromal antigen 2 [Source:HGNC Symbol;Acc:HGNC:11355]
90. DNAJC10 ENSGALG00000008862 3114 0.765 - - - - - - 0.765 - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
91. RPUSD4 ENSGALG00000024326 3788 0.765 - - - - - - 0.765 - - - RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]
92. LYVE1 ENSGALG00000005643 1230 0.763 - - - - - - 0.763 - - - lymphatic vessel endothelial hyaluronan receptor 1 [Source:NCBI gene;Acc:423038]
93. KPNA2 ENSGALG00000003584 76058 0.763 - - - - 0.763 - - - - - karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
94. CSDE1 ENSGALG00000002139 1683 0.762 - - - - - - 0.762 - - - cold shock domain containing E1 [Source:NCBI gene;Acc:419886]
95. LUZP2 ENSGALG00000030151 585 0.762 - - - - - - 0.762 - - - leucine zipper protein 2 [Source:NCBI gene;Acc:423001]
96. G3BP1 ENSGALG00000004160 36795 0.761 - - - - 0.761 - - - - - G3BP stress granule assembly factor 1 [Source:NCBI gene;Acc:416265]
97. MAPT ENSGALG00000000625 659 0.761 - - - - - - 0.761 - - - microtubule associated protein tau [Source:NCBI gene;Acc:426737]
98. LHFPL2 ENSGALG00000004437 500 0.76 - - - - - - 0.760 - - - LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]
99. YWHAH ENSGALG00000006743 29828 0.759 - - - - 0.759 - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
100. TOP2B ENSGALG00000011300 25048 0.756 - - - - 0.756 - - - - - DNA topoisomerase 2-beta [Source:NCBI gene;Acc:395966]

There are 37 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA