Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for BRCA1

Gene Name Gene ID Reads Annotation
BRCA1 ENSGALG00000002781 2052 BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]











Genes with expression patterns similar to BRCA1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. BRCA1 ENSGALG00000002781 2052 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
2. CREBL2 ENSGALG00000037030 1247 1.778 - - - - - - 0.909 0.869 - - cAMP responsive element binding protein like 2 [Source:NCBI gene;Acc:426496]
3. GKAP1 ENSGALG00000012586 2908 1.764 - - - - 0.825 - - 0.939 - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
4. CLCN5 ENSGALG00000007234 1143 1.729 - - - - - - 0.786 0.943 - - chloride voltage-gated channel 5 [Source:HGNC Symbol;Acc:HGNC:2023]
5. HDAC1 ENSGALG00000003297 3528 1.691 - - - - - - 0.767 0.924 - - histone deacetylase 1 [Source:NCBI gene;Acc:373961]
6. CCDC117 ENSGALG00000005784 185 1.688 - - - - - - 0.750 0.938 - - coiled-coil domain containing 117 [Source:HGNC Symbol;Acc:HGNC:26599]
7. IBTK ENSGALG00000015864 3154 1.674 - - - - - - 0.774 0.900 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
8. GLT8D1 ENSGALG00000001642 4232 1.659 - - - - 0.764 - - 0.895 - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
9. NPAT ENSGALG00000017162 1574 1.642 - - - - - - 0.715 0.927 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
10. NPNT ENSGALG00000043555 3002 1.606 - - - - - - 0.763 0.843 - - nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
11. NMB ENSGALG00000043506 1387 1.56 - - - - 0.709 - - 0.851 - - neuromedin B [Source:NCBI gene;Acc:415333]
12. TERF1 ENSGALG00000037453 4497 1.551 - - 0.704 - - - - 0.847 - - telomeric repeat binding factor 1 [Source:NCBI gene;Acc:378896]
13. RELL1 ENSGALG00000014336 2950 1.545 - - - - 0.718 - - 0.827 - - RELT like 1 [Source:NCBI gene;Acc:422795]
14. RPA3 ENSGALG00000010700 6212 1.511 - - - - 0.770 - 0.741 - - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
15. PLEK2 ENSGALG00000009562 706 1.508 - - - - 0.713 - 0.795 - - - pleckstrin 2 [Source:NCBI gene;Acc:423278]
16. TRPC6 ENSGALG00000029416 281 1.491 - - - - 0.737 - 0.754 - - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
17. ENSGALG00000006865 ENSGALG00000006865 307 1.486 - - - - 0.779 - 0.707 - - -
18. MPZL3 ENSGALG00000021271 1857 1.479 - - 0.731 - - - 0.748 - - - myelin protein zero like 3 [Source:NCBI gene;Acc:419778]
19. C26H6ORF89 C26H6ORF89 1826 1.476 - - - - 0.708 - 0.768 - - -
20. KIF18B ENSGALG00000031553 3192 1.463 - - - - 0.746 - 0.717 - - - kinesin family member 18B [Source:NCBI gene;Acc:419968]
21. VRTN ENSGALG00000010232 692 1.444 - - - - 0.717 - 0.727 - - - vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
22. PTTG1 17936 1.433 - - - - - - 0.711 0.722 - - pituitary tumor-transforming 1, transcript variant X1
23. MTIF2 ENSGALG00000031265 2366 0.97 - - - - - - - 0.970 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
24. ATP1B3 ENSGALG00000002764 1890 0.961 - - - - - - - 0.961 - - ATPase Na+/K+ transporting subunit beta 3 [Source:NCBI gene;Acc:396549]
25. SPATA2 ENSGALG00000008026 2040 0.956 - - - - - - - 0.956 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
26. TXNDC11 ENSGALG00000003154 2224 0.956 - - - - - - - 0.956 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
27. SMG8 ENSGALG00000005093 5557 0.953 - - - - - - - 0.953 - - SMG8 nonsense mediated mRNA decay factor
28. SLC25A28 ENSGALG00000007479 4902 0.95 - - - - - - - 0.950 - - solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]
29. BACE2 ENSGALG00000034932 1570 0.949 - - - - - - - 0.949 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
30. G2E3 ENSGALG00000009907 1754 0.946 - - - - - - - 0.946 - - G2/M-phase specific E3 ubiquitin protein ligase [Source:NCBI gene;Acc:423305]
31. ZNF750 ENSGALG00000001518 151 0.945 - - - - - - - 0.945 - - zinc finger protein 750 [Source:HGNC Symbol;Acc:HGNC:25843]
32. HAGHL ENSGALG00000021040 1568 0.944 - - - - - - - 0.944 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
33. TMEM161A ENSGALG00000025809 2813 0.944 - - - - - - - 0.944 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
34. NUDT6 ENSGALG00000011834 1309 0.943 - - - - - - - 0.943 - - nudix hydrolase 6 [Source:HGNC Symbol;Acc:HGNC:8053]
35. KIAA1009 KIAA1009 1261 0.943 - - - - - - - 0.943 - -
36. CCDC80 ENSGALG00000015193 1387 0.941 - - - - - - - 0.941 - - coiled-coil domain containing 80 [Source:NCBI gene;Acc:395074]
37. NRG1 ENSGALG00000015422 196 0.941 - - - - - - - 0.941 - - neuregulin 1 [Source:NCBI gene;Acc:373906]
38. GP1BB ENSGALG00000021529 348 0.941 - - - - - - - 0.941 - - glycoprotein Ib platelet subunit beta [Source:HGNC Symbol;Acc:HGNC:4440]
39. LRIG3 ENSGALG00000009755 6655 0.94 - - - - - - - 0.940 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
40. PNN ENSGALG00000010167 6417 0.94 - - - - - - - 0.940 - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
41. ASTN2 ENSGALG00000007038 1748 0.94 - - - - - - - 0.940 - - astrotactin 2 [Source:HGNC Symbol;Acc:HGNC:17021]
42. ENSGALG00000018634 ENSGALG00000018634 414 0.939 - - - - - - - 0.939 - -
43. APBB2 ENSGALG00000014262 569 0.939 - - - - - - - 0.939 - - amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]
44. FBXL17 ENSGALG00000000276 2443 0.936 - - - - - - - 0.936 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
45. ZBTB18 ENSGALG00000010705 3433 0.936 - - - - - - - 0.936 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
46. PKN3 532 0.936 - - - - - - - 0.936 - - protein kinase N3, transcript variant X2
47. AIP ENSGALG00000040247 4166 0.935 - - - - - - - 0.935 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
48. RIMKLB ENSGALG00000040184 281 0.935 - - - - - - - 0.935 - - ribosomal modification protein rimK like family member B [Source:HGNC Symbol;Acc:HGNC:29228]
49. ABHD12B ENSGALG00000020342 511 0.935 - - - - - - - 0.935 - - abhydrolase domain containing 12B, transcript variant X2
50. CRABP2 ENSGALG00000029140 559 0.935 - - - - - - - 0.935 - - cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2339]
51. DMA DMA 1012 0.934 - - - - - - - 0.934 - -
52. HOOK1 ENSGALG00000010889 1007 0.934 - - - - - - - 0.934 - - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
53. RBM46 ENSGALG00000009278 98 0.933 - - - - - - - 0.933 - - RNA binding motif protein 46 [Source:HGNC Symbol;Acc:HGNC:28401]
54. UBN1 ENSGALG00000031416 2848 0.933 - - - - - - - 0.933 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
55. PAIP1 ENSGALG00000014867 202 0.932 - - - - - - - 0.932 - - poly(A) binding protein interacting protein 1 [Source:NCBI gene;Acc:427195]
56. ITFG1 ENSGALG00000004049 2934 0.931 - - - - - - - 0.931 - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
57. MAOB ENSGALG00000032836 1054 0.93 - - - - - - - 0.930 - - monoamine oxidase B
58. ENSGALG00000011233 ENSGALG00000011233 42 0.93 - - - - - - - 0.930 - -
59. TRPC1 ENSGALG00000002639 296 0.93 - - - - - - - 0.930 - - transient receptor potential cation channel subfamily C member 1 [Source:NCBI gene;Acc:424776]
60. RFX7 ENSGALG00000041896 69 0.93 - - - - - - - 0.930 - - regulatory factor X7 [Source:HGNC Symbol;Acc:HGNC:25777]
61. SRR ENSGALG00000003155 93 0.93 - - - - - - - 0.930 - - serine racemase [Source:HGNC Symbol;Acc:HGNC:14398]
62. NCAPH ENSGALG00000032270 2103 0.93 - - - - - - - 0.930 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
63. NPR2 ENSGALG00000027630 871 0.929 - - - - - - - 0.929 - - natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]
64. LIMS1 ENSGALG00000029970 7244 0.929 - - - - - - - 0.929 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
65. AGRN ENSGALG00000039193 8135 0.929 - - - - - - - 0.929 - - agrin [Source:NCBI gene;Acc:396538]
66. SPATA2L ENSGALG00000044991 463 0.929 - - - - - - - 0.929 - - spermatogenesis associated 2 like [Source:HGNC Symbol;Acc:HGNC:28393]
67. EML1 1941 0.929 - - - - - - - 0.929 - - echinoderm microtubule associated protein like 1, transcript variant X11
68. CPT2 ENSGALG00000010681 3211 0.928 - - - - - - - 0.928 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
69. ENSGALG00000021439 ENSGALG00000021439 628 0.928 - - - - - - - 0.928 - -
70. BUD13 ENSGALG00000025882 1800 0.928 - - - - - - - 0.928 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
71. NT5C3B ENSGALG00000003651 5190 0.927 - - - - - - - 0.927 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
72. ARNTL2 ENSGALG00000014096 998 0.926 - - - - - - - 0.926 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
73. PPP2R3A ENSGALG00000034512 1091 0.926 - - - - - - - 0.926 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
74. SELENBP1 ENSGALG00000000866 1253 0.926 - - - - - - - 0.926 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
75. KIF21B ENSGALG00000034347 4144 0.926 - - - - - - - 0.926 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
76. SLC19A1 ENSGALG00000030511 1397 0.926 - - - - - - - 0.926 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
77. RCAN3 ENSGALG00000004282 7778 0.925 - - - - - - - 0.925 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
78. ANGPTL1 ENSGALG00000004290 1922 0.925 - - - - - - - 0.925 - - angiopoietin like 1 [Source:NCBI gene;Acc:770850]
79. PECR ENSGALG00000011497 1714 0.925 - - - - - - - 0.925 - - peroxisomal trans-2-enoyl-CoA reductase [Source:NCBI gene;Acc:424224]
80. TICAM1 ENSGALG00000026850 723 0.924 - - - - - - - 0.924 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
81. NPL ENSGALG00000004614 617 0.924 - - - - - - - 0.924 - - N-acetylneuraminate pyruvate lyase [Source:NCBI gene;Acc:429074]
82. TPM3 ENSGALG00000013537 934 0.923 - - - - - - - 0.923 - - Gallus gallus tropomyosin 3 (TPM3), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352039]
83. PDZD8 ENSGALG00000029095 1068 0.923 - - - - - - - 0.923 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
84. EPGN ENSGALG00000010859 187 0.923 - - - - - - - 0.923 - - epithelial mitogen [Source:NCBI gene;Acc:497270]
85. USP28 ENSGALG00000006969 2645 0.921 - - - - - - - 0.921 - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
86. ERMARD ENSGALG00000011186 1001 0.921 - - - - - - - 0.921 - - ER membrane associated RNA degradation [Source:HGNC Symbol;Acc:HGNC:21056]
87. FGFR1 ENSGALG00000039786 4480 0.921 - - - - - - - 0.921 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
88. RASA3 ENSGALG00000016817 2146 0.92 - - - - - - - 0.920 - - RAS p21 protein activator 3 [Source:NCBI gene;Acc:418736]
89. TTC38 ENSGALG00000014551 1135 0.919 - - - - - - - 0.919 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
90. VPS13D ENSGALG00000034777 2350 0.918 - - - - - - - 0.918 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
91. MMP15 ENSGALG00000038758 49988 0.917 - - - - - - - 0.917 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
92. SH3TC1 ENSGALG00000015568 484 0.916 - - - - - - - 0.916 - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
93. ENTPD4 ENSGALG00000000390 1394 0.916 - - - - - - - 0.916 - - ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]
94. MURC 3759 0.916 - - - - - - - 0.916 - - muscle related coiled-coil protein
95. DOK5 ENSGALG00000007786 1732 0.915 - - - - - - - 0.915 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
96. CCNL2 ENSGALG00000001551 2620 0.914 - - - - - - - 0.914 - - cyclin L2 [Source:NCBI gene;Acc:395124]
97. TCTN2 ENSGALG00000023683 3596 0.913 - - - - - - - 0.913 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
98. KLF6 ENSGALG00000033178 679 0.912 - - - - - - - 0.912 - - Kruppel like factor 6 [Source:NCBI gene;Acc:420463]
99. AGGF1 ENSGALG00000004311 3011 0.911 - - - - - - - 0.911 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
100. MTUS1 ENSGALG00000013615 1040 0.91 - - - - - - - 0.910 - - microtubule associated tumor suppressor 1, transcript variant X4

There are 381 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA