Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for BDNF

Gene Name Gene ID Reads Annotation
BDNF ENSGALG00000012163 159 brain derived neurotrophic factor [Source:NCBI gene;Acc:396186]











Genes with expression patterns similar to BDNF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. BDNF ENSGALG00000012163 159 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 brain derived neurotrophic factor [Source:NCBI gene;Acc:396186]
2. TAL2 ENSGALG00000023114 17 0.975 - - - - - 0.975 - - - - TAL bHLH transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11557]
3. MYL3 ENSGALG00000005448 3379 0.96 - - - - - 0.960 - - - - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
4. ENSGALG00000007050 ENSGALG00000007050 28 0.898 - - - - - 0.898 - - - -
5. SYCP1 ENSGALG00000002511 13 0.879 - - - - - 0.879 - - - - synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
6. SNORA28 SNORA28 12 0.879 - - - - - 0.879 - - - -
7. SUB1L1 ENSGALG00000027147 73 0.879 - - - - - 0.879 - - - - SUB1 homolog (S. cerevisiae)-like 1
8. ASIC2 ENSGALG00000000367 72 0.878 - - - - - 0.878 - - - - acid sensing ion channel subunit 2, transcript variant X2
9. TMEM114 ENSGALG00000039005 13 0.835 - - - - - 0.835 - - - - transmembrane protein 114 [Source:HGNC Symbol;Acc:HGNC:33227]
10. CLDN16 ENSGALG00000025821 14 0.824 - - - - - 0.824 - - - - claudin 16 [Source:HGNC Symbol;Acc:HGNC:2037]
11. ONECUT3 ENSGALG00000028081 1 0.824 - - - - - 0.824 - - - - one cut homeobox 3 [Source:HGNC Symbol;Acc:HGNC:13399]
12. gga-mir-219b ENSGALG00000018278 1 0.824 - - - - - 0.824 - - - - gga-mir-219b [Source:miRBase;Acc:MI0015382]
13. FNIP1 ENSGALG00000017462 4 0.824 - - - - - 0.824 - - - - folliculin interacting protein 1 [Source:NCBI gene;Acc:427642]
14. NGB ENSGALG00000010413 0 0.824 - - - - - 0.824 - - - - neuroglobin [Source:NCBI gene;Acc:428896]
15. THBD ENSGALG00000044442 6 0.824 - - - - - 0.824 - - - - thrombomodulin
16. GRM5 ENSGALG00000017238 2 0.824 - - - - - 0.824 - - - - glutamate receptor, metabotropic 5 [Source:NCBI gene;Acc:373933]
17. STAM2 ENSGALG00000012513 9 0.824 - - - - - 0.824 - - - - signal transducing adaptor molecule 2 [Source:NCBI gene;Acc:424317]
18. ALK 2 0.824 - - - - - 0.824 - - - - anaplastic lymphoma receptor tyrosine kinase, transcript variant X3
19. CCDC178 6 0.824 - - - - - 0.824 - - - - coiled-coil domain containing 178, transcript variant X3
20. TLL2 ENSGALG00000005519 10 0.824 - - - - - 0.824 - - - - tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:11844]
21. CASZ1 ENSGALG00000002888 2 0.824 - - - - - 0.824 - - - - castor zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:26002]
22. NRG3 ENSGALG00000042812 10 0.824 - - - - - 0.824 - - - - neuregulin 3 [Source:HGNC Symbol;Acc:HGNC:7999]
23. PSEN2 ENSGALG00000009073 7 0.824 - - - - - 0.824 - - - - presenilin 2 (Alzheimer disease 4) [Source:NCBI gene;Acc:374188]
24. GZMA ENSGALG00000013548 22 0.824 - - - - - 0.824 - - - - granzyme A [Source:NCBI gene;Acc:395108]
25. 5S 5S 0 0.824 - - - - - 0.824 - - - -
26. RAB43 ENSGALG00000005021 5 0.824 - - - - - 0.824 - - - - RAB43, member RAS oncogene family [Source:NCBI gene;Acc:415970]
27. CCDC28A ENSGALG00000013834 8 0.824 - - - - - 0.824 - - - - coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:HGNC:21098]
28. TEX33 ENSGALG00000012490 11 0.824 - - - - - 0.824 - - - - testis expressed 33, transcript variant X2
29. MFHAS1 ENSGALG00000011444 7 0.824 - - - - - 0.824 - - - - malignant fibrous histiocytoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:16982]
30. ASPR ASPR 1 0.824 - - - - - 0.824 - - - -
31. NADSYN1 ENSGALG00000004153 8 0.824 - - - - - 0.824 - - - - NAD synthetase 1 [Source:NCBI gene;Acc:422983]
32. GDPGP1 ENSGALG00000045045 2 0.824 - - - - - 0.824 - - - - GDP-D-glucose phosphorylase 1
33. MMP9 ENSGALG00000006992 78 0.824 - - - - - 0.824 - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
34. SNX19 ENSGALG00000001425 2 0.824 - - - - - 0.824 - - - - sorting nexin 19 [Source:HGNC Symbol;Acc:HGNC:21532]
35. LRRC9 2 0.824 - - - - - 0.824 - - - - leucine rich repeat containing 9
36. CHAT ENSGALG00000002289 26 0.824 - - - - - 0.824 - - - - choline O-acetyltransferase [Source:NCBI gene;Acc:395314]
37. FAT2 ENSGALG00000004320 4 0.824 - - - - - 0.824 - - - - FAT atypical cadherin 2 [Source:HGNC Symbol;Acc:HGNC:3596]
38. RNFT2 ENSGALG00000008217 0 0.824 - - - - - 0.824 - - - - ring finger protein, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25905]
39. ENSGALG00000009485 ENSGALG00000009485 4 0.824 - - - - - 0.824 - - - -
40. ENSGALG00000021106 ENSGALG00000021106 35 0.824 - - - - - 0.824 - - - -
41. QSOX1 ENSGALG00000003933 184 0.824 - - - - - 0.824 - - - - quiescin Q6 sulfhydryl oxidase 1 [Source:NCBI gene;Acc:373914]
42. NFATC3 ENSGALG00000003396 40 0.824 - - - - - 0.824 - - - - nuclear factor of activated T cells 3 [Source:HGNC Symbol;Acc:HGNC:7777]
43. ENSGALG00000023638 ENSGALG00000023638 16 0.824 - - - - - 0.824 - - - -
44. CNNM1 ENSGALG00000007489 43 0.824 - - - - - 0.824 - - - - cyclin and CBS domain divalent metal cation transport mediator 1 [Source:HGNC Symbol;Acc:HGNC:102]
45. CASS4 ENSGALG00000007744 10 0.824 - - - - - 0.824 - - - - Cas scaffold protein family member 4 [Source:HGNC Symbol;Acc:HGNC:15878]
46. IAPP ENSGALG00000013168 1 0.824 - - - - - 0.824 - - - - islet amyloid polypeptide [Source:NCBI gene;Acc:396362]
47. WDR37 ENSGALG00000006749 44 0.824 - - - - - 0.824 - - - - WD repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:31406]
48. NT5DC3 ENSGALG00000029746 1 0.824 - - - - - 0.824 - - - - 5'-nucleotidase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30826]
49. IL17RA ENSGALG00000033887 0 0.824 - - - - - 0.824 - - - - Gallus gallus interleukin 17 receptor A (IL17RA), mRNA. [Source:RefSeq mRNA;Acc:NM_001318988]
50. ENSGALG00000013992 ENSGALG00000013992 6 0.824 - - - - - 0.824 - - - -
51. HABP2 ENSGALG00000008905 1 0.824 - - - - - 0.824 - - - - hyaluronan binding protein 2 [Source:NCBI gene;Acc:423898]
52. HIAT1 HIAT1 447 0.824 - - - - - 0.824 - - - -
53. PASD1 ENSGALG00000009063 0 0.824 - - - - - 0.824 - - - - PAS domain containing repressor 1, transcript variant X4
54. ENSGALG00000028833 ENSGALG00000028833 0 0.824 - - - - - 0.824 - - - -
55. SNORD61 SNORD61 12 0.824 - - - - - 0.824 - - - -
56. TMEM161B ENSGALG00000010896 36 0.824 - - - - - 0.824 - - - - transmembrane protein 161B [Source:HGNC Symbol;Acc:HGNC:28483]
57. VPS9D1 ENSGALG00000023468 1 0.824 - - - - - 0.824 - - - - VPS9 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13526]
58. CRCBL ENSGALG00000025881 3 0.824 - - - - - 0.824 - - - - cytokine receptor common subunit beta-like, transcript variant X3
59. TMEM132D ENSGALG00000002671 12 0.824 - - - - - 0.824 - - - - transmembrane protein 132D, transcript variant X6
60. CA12 ENSGALG00000003456 62 0.824 - - - - - 0.824 - - - - carbonic anhydrase 12 [Source:HGNC Symbol;Acc:HGNC:1371]
61. C12orf50 ENSGALG00000045093 9 0.824 - - - - - 0.824 - - - - chromosome 12 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26665]
62. INTS3 8 0.824 - - - - - 0.824 - - - - integrator complex subunit 3, transcript variant X2
63. DAPK1 ENSGALG00000012608 17 0.824 - - - - - 0.824 - - - - death-associated protein kinase 1 [Source:NCBI gene;Acc:431670]
64. CD5 ENSGALG00000031735 3 0.824 - - - - - 0.824 - - - - CD5 molecule [Source:NCBI gene;Acc:395757]
65. APBB1 ENSGALG00000046164 5 0.824 - - - - - 0.824 - - - - amyloid beta precursor protein binding family B member 1 [Source:HGNC Symbol;Acc:HGNC:581]
66. FAM46C 13 0.824 - - - - - 0.824 - - - - family with sequence similarity 46 member C
67. LOC422320 ENSGALG00000007703 6 0.824 - - - - - 0.824 - - - - ligand of Numb protein X 2-like, transcript variant X1
68. TRPM1 ENSGALG00000003849 5 0.824 - - - - - 0.824 - - - - transient receptor potential cation channel subfamily M member 1 [Source:HGNC Symbol;Acc:HGNC:7146]
69. FAM194B FAM194B 1 0.824 - - - - - 0.824 - - - -
70. PITPNA ENSGALG00000023806, ENSGALG00000035005 8 0.824 - - - - - 0.824 - - - - phosphatidylinositol transfer protein alpha [Source:HGNC Symbol;Acc:HGNC:9001]
71. EGLN3 ENSGALG00000010001 32 0.815 - - - - - 0.815 - - - - egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]
72. MTPN ENSGALG00000041619 1 0.801 - - - - - 0.801 - - - - myotrophin [Source:NCBI gene;Acc:395702]
73. SLC25A42 ENSGALG00000002621 6 0.8 - - - - - 0.800 - - - - solute carrier family 25 member 42 [Source:HGNC Symbol;Acc:HGNC:28380]
74. APLNR ENSGALG00000004841 176 0.795 - - - - - - - 0.795 - - apelin receptor [Source:HGNC Symbol;Acc:HGNC:339]
75. PDZD7 ENSGALG00000020726 72 0.794 - - - - - - - - - 0.794 PDZ domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26257]
76. FANCD2 ENSGALG00000003720 634 0.791 - - - - - - - 0.791 - - Fanconi anemia complementation group D2 [Source:NCBI gene;Acc:415935]
77. ACSS1 ENSGALG00000008632 397 0.787 - - 0.787 - - - - - - - acyl-CoA synthetase short chain family member 1 [Source:HGNC Symbol;Acc:HGNC:16091]
78. NLN ENSGALG00000014769 95 0.782 - - - - - - - 0.782 - - neurolysin [Source:HGNC Symbol;Acc:HGNC:16058]
79. gga-mir-6627 gga-mir-6627 233 0.782 - - - - - 0.782 - - - -
80. ATP6AP1L ENSGALG00000015618 476 0.777 - - - - - - - 0.777 - - ATPase H+ transporting accessory protein 1 like [Source:HGNC Symbol;Acc:HGNC:28091]
81. PDGFC ENSGALG00000009378 218 0.776 - - - - - - - 0.776 - - platelet derived growth factor C [Source:NCBI gene;Acc:395469]
82. PRDM8 ENSGALG00000038372 928 0.774 - - - - - 0.774 - - - - PR/SET domain 8 [Source:HGNC Symbol;Acc:HGNC:13993]
83. FBLN7 ENSGALG00000046358 27 0.772 - - - - - - - 0.772 - - Gallus gallus fibulin 7 (FBLN7), mRNA. [Source:RefSeq mRNA;Acc:NM_001326496]
84. ATP8A2 ENSGALG00000017106 31 0.77 - - - - - - - 0.770 - - ATPase phospholipid transporting 8A2 [Source:HGNC Symbol;Acc:HGNC:13533]
85. PLXNB1 23 0.77 - - - - - - - 0.770 - - plexin B1, transcript variant X2
86. HINFP ENSGALG00000006806 15 0.77 - - - - - - - 0.770 - - histone H4 transcription factor [Source:HGNC Symbol;Acc:HGNC:17850]
87. A4GNT ENSGALG00000006600 11 0.77 - - - - - - - 0.770 - - alpha-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:17968]
88. SLC16A12 ENSGALG00000006421 4 0.77 - - - - - - - 0.770 - - solute carrier family 16 member 12 [Source:HGNC Symbol;Acc:HGNC:23094]
89. MOGAT1 ENSGALG00000005217 12 0.77 - - - - - - - 0.770 - - monoacylglycerol O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:18210]
90. FOXP2 ENSGALG00000009424 101 0.767 - - - - - - - 0.767 - - forkhead box P2 [Source:HGNC Symbol;Acc:HGNC:13875]
91. CCDC96 9 0.766 - - - - - 0.766 - - - - coiled-coil domain containing 96
92. LNP1 ENSGALG00000015287 14 0.766 - - - - - 0.766 - - - - leukemia NUP98 fusion partner 1 [Source:HGNC Symbol;Acc:HGNC:28014]
93. MICALL2 ENSGALG00000004070 23 0.766 - - - - - 0.766 - - - - MICAL like 2 [Source:HGNC Symbol;Acc:HGNC:29672]
94. ENTPD5 ENSGALG00000010202 69 0.766 - - - - - 0.766 - - - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
95. BRAT1 ENSGALG00000004348 158 0.764 - - - - - - - 0.764 - - BRCA1 associated ATM activator 1, transcript variant X3
96. ENSGALG00000006389 ENSGALG00000006389 41 0.764 - - - - - - - 0.764 - -
97. SPI1 ENSGALG00000008127 170 0.763 - - - - - - - 0.763 - - Spi-1 proto-oncogene [Source:NCBI gene;Acc:395879]
98. INHBA ENSGALG00000034616 49 0.762 - - - - - - - 0.762 - - inhibin subunit beta A [Source:NCBI gene;Acc:396361]
99. NCLN ENSGALG00000013369 37 0.762 - - - - - - - 0.762 - - nicalin [Source:NCBI gene;Acc:426048]
100. ENSGALG00000012463 ENSGALG00000012463 242 0.761 - - 0.761 - - - - - - -

There are 50 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA