Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ATRX

Gene Name Gene ID Reads Annotation
ATRX ENSGALG00000007843 34172 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]











Genes with expression patterns similar to ATRX

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. ATRX ENSGALG00000007843 34172 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
2. RBBP6 ENSGALG00000006043 9708 3.239 0.875 0.735 0.789 - - - 0.840 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
3. HMGB1 ENSGALG00000042875 83509 2.401 0.889 0.741 0.771 - - - - - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
4. SMC2 ENSGALG00000015691 34013 2.388 0.846 - 0.771 - - 0.771 - - - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
5. YBX1 ENSGALG00000004848 20992 2.32 0.712 - 0.743 - - - 0.865 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
6. THOC2 ENSGALG00000008507 9501 1.73 0.897 - - - - - 0.833 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
7. USP16 ENSGALG00000015813 6803 1.701 0.821 - - - - 0.880 - - - - ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
8. BPTF ENSGALG00000038222 7521 1.664 0.793 - - - - - 0.871 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
9. ARID4A ENSGALG00000012037 8554 1.651 0.784 - - - - - 0.867 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
10. CCND1 ENSGALG00000007555 6715 1.635 0.749 - - - - - 0.886 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
11. CENPF ENSGALG00000009690 10429 1.629 0.784 - - - - - 0.845 - - - centromere protein F [Source:NCBI gene;Acc:395357]
12. ANKRD11 ENSGALG00000006222 12327 1.62 0.882 0.738 - - - - - - - - ankyrin repeat domain 11, transcript variant X2
13. PPIG ENSGALG00000009839 24114 1.612 0.875 - - - - 0.737 - - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
14. NAP1L1 ENSGALG00000010238 14506 1.585 0.837 - - - - - - - 0.748 - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
15. SCAF11 ENSGALG00000028849 2603 1.563 0.794 - - - - 0.769 - - - - SR-related CTD-associated factor 11 [Source:NCBI gene;Acc:417805]
16. TOP2A ENSGALG00000003922 7726 1.562 0.836 0.726 - - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
17. SERBP1 ENSGALG00000011229 30489 1.534 0.752 - 0.782 - - - - - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
18. PABPC1 ENSGALG00000030280 23934 1.53 0.804 - 0.726 - - - - - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
19. U2SURP ENSGALG00000002612 4255 1.457 0.738 - - - - 0.719 - - - - U2 snRNP associated SURP domain containing [Source:HGNC Symbol;Acc:HGNC:30855]
20. AKAP12 ENSGALG00000036240 64617 1.439 0.713 - 0.726 - - - - - - - A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
21. USP8 ENSGALG00000005894 4499 1.434 0.723 - 0.711 - - - - - - - ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:HGNC:12631]
22. SMARCC1 ENSGALG00000032642 4842 1.427 0.720 0.707 - - - - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
23. NAA25 ENSGALG00000041821 12729 0.922 - - - - - - 0.922 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
24. NARS ENSGALG00000040506 9506 0.919 - - - - - - 0.919 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
25. XPA ENSGALG00000028998 8621 0.906 - - - - - - 0.906 - - - XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
26. PTBP1 ENSGALG00000001962 66983 0.9 - - - - - - 0.900 - - - polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
27. ADH5 ENSGALG00000012245 38217 0.9 - - - - - - 0.900 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
28. MAGOH 28688 0.898 - - - - - - 0.898 - - - mago homolog, exon junction complex core component
29. ARL6IP5 ENSGALG00000038904 12956 0.89 - - - - - - 0.890 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
30. ACAA2 ENSGALG00000031142 29220 0.888 - - - - - - 0.888 - - - acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
31. UTP3 ENSGALG00000011553 8814 0.888 - - - - - - 0.888 - - - UTP3, small subunit processome component homolog (S. cerevisiae)
32. COL4A1 ENSGALG00000036798 12749 0.886 - - - - - - 0.886 - - - collagen type IV alpha 1 chain [Source:NCBI gene;Acc:395530]
33. ALDH4A1 ENSGALG00000042184 9432 0.884 - - - - - - 0.884 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
34. TCF3 ENSGALG00000001093 15624 0.88 - - - - - - 0.880 - - - transcription factor 3 [Source:NCBI gene;Acc:395146]
35. MRPL19 ENSGALG00000016731 22670 0.88 - - - - - - 0.880 - - - mitochondrial ribosomal protein L19, transcript variant X1
36. KIF20A ENSGALG00000035030 10249 0.879 - - - - - - 0.879 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
37. ARNT2 ENSGALG00000006445 7050 0.879 - - - - - - 0.879 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
38. NCOA4 ENSGALG00000002066 10544 0.878 - - - - - - 0.878 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
39. DNAJC15 ENSGALG00000016965 9163 0.877 - - - - - - 0.877 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
40. ENSGALG00000007509 ENSGALG00000007509 18441 0.877 - - - - - - 0.877 - - -
41. PSMG3 ENSGALG00000004203 11240 0.877 - - - - - - 0.877 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
42. FUNDC1 ENSGALG00000028187 10511 0.875 - - - - - - 0.875 - - - FUN14 domain containing 1 [Source:NCBI gene;Acc:418558]
43. LARP1 ENSGALG00000040109 14808 0.875 - - - - - - 0.875 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
44. EIF5B ENSGALG00000016764 30681 0.875 0.875 - - - - - - - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
45. TRAM1 ENSGALG00000041112 22876 0.874 - - - - - - 0.874 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
46. POR ENSGALG00000002053 5223 0.874 - - - - - - 0.874 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
47. VMP1 ENSGALG00000005160 12859 0.873 - - - - - - 0.873 - - - vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
48. AKAP9 ENSGALG00000040724 7446 0.872 0.872 - - - - - - - - - A-kinase anchoring protein 9 [Source:NCBI gene;Acc:395695]
49. NUCKS1 ENSGALG00000000708 80882 0.868 0.868 - - - - - - - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
50. LAP3 ENSGALG00000006334 21076 0.866 - - - - - - 0.866 - - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
51. GCLM ENSGALG00000005782 15789 0.866 - - - - - - 0.866 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
52. PSMD1 ENSGALG00000007664 7609 0.866 0.866 - - - - - - - - - proteasome 26S subunit, non-ATPase 1 [Source:NCBI gene;Acc:424926]
53. RBM12B ENSGALG00000035129 4314 0.865 - - - - - - 0.865 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
54. ZMYND11 ENSGALG00000006599 5740 0.865 - - - - - - 0.865 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
55. PSMC2 ENSGALG00000008236 25980 0.864 - - - - - - 0.864 - - - proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
56. SDF4 ENSGALG00000001872 6382 0.863 - - - - - - 0.863 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
57. PTDSS1 ENSGALG00000030185 5515 0.863 - - - - - - 0.863 - - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
58. TCERG1 ENSGALG00000007528 6346 0.862 0.862 - - - - - - - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
59. DYNC1LI1 ENSGALG00000011491 11011 0.862 - - - - - - 0.862 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
60. TCP1 ENSGALG00000011637 73216 0.861 - - - - - - 0.861 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
61. CCDC58 ENSGALG00000014413 9022 0.861 - - - - - - 0.861 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
62. RDX ENSGALG00000017153 6734 0.86 0.860 - - - - - - - - - radixin [Source:NCBI gene;Acc:395511]
63. CLPTM1L ENSGALG00000013187 9733 0.859 - - - - - - 0.859 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
64. SEMA4B ENSGALG00000008297 11202 0.859 - - - - - - 0.859 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
65. H2AFY_1 ENSGALG00000040141 4895 0.858 - - - - - - 0.858 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
66. DDX46 ENSGALG00000006404 8765 0.856 0.856 - - - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
67. MFGE8 ENSGALG00000006702 6976 0.856 - - - - - - 0.856 - - - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
68. ARPC4 ENSGALG00000006691 33311 0.855 - - - - - - 0.855 - - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
69. HDGFL3 ENSGALG00000006036 13576 0.853 - - - - - - 0.853 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
70. MAP1B ENSGALG00000014999 6288 0.853 0.853 - - - - - - - - - microtubule associated protein 1B
71. TM9SF3 ENSGALG00000005534 15290 0.853 - - - - - - 0.853 - - - transmembrane 9 superfamily member 3
72. SIRT1 ENSGALG00000002761 9028 0.852 - - - - - - 0.852 - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
73. ENSGALG00000027854 ENSGALG00000027854 5007 0.85 - - - - - - 0.850 - - -
74. SOD2 ENSGALG00000011661 13178 0.85 - - - - - - 0.850 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
75. LACTB2 ENSGALG00000038745 3460 0.85 - - - - - - 0.850 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
76. PPP3R1 ENSGALG00000023648 3417 0.849 - - - - - - 0.849 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
77. TP53BP2 ENSGALG00000042816 12368 0.848 - - - - - - 0.848 - - - tumor protein p53 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:12000]
78. MRPL44 ENSGALG00000003067 15256 0.848 - - - - - - 0.848 - - - mitochondrial ribosomal protein L44 [Source:NCBI gene;Acc:424795]
79. COPE ENSGALG00000003153 19444 0.847 - - - - - - 0.847 - - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
80. SURF6 ENSGALG00000038413 11178 0.847 0.847 - - - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
81. DNA2 ENSGALG00000004037 5426 0.846 - - - - - - 0.846 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
82. FASTKD2 ENSGALG00000008529 7439 0.846 - - - - - - 0.846 - - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
83. METTL11A METTL11A 11876 0.846 - - - - - - 0.846 - - -
84. MCM4 ENSGALG00000012915 13151 0.845 - - - - - - 0.845 - - - minichromosome maintenance complex component 4
85. SF3A3 ENSGALG00000001540 9664 0.845 - - - - - - 0.845 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
86. AP2B1 ENSGALG00000042125 13229 0.844 - - - - - - 0.844 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
87. KCTD9 ENSGALG00000000275 3455 0.844 - - - - - - 0.844 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
88. MINOS1 ENSGALG00000004039 37740 0.844 - - - - - - 0.844 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
89. HMGN5 ENSGALG00000007131 171006 0.843 0.843 - - - - - - - - - high mobility group nucleosome binding domain 5, transcript variant X1
90. EEF2 ENSGALG00000033884 62036 0.843 0.843 - - - - - - - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
91. MTDH ENSGALG00000034050 9525 0.843 0.843 - - - - - - - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
92. E2F6 ENSGALG00000016454 4747 0.843 - - - - - - 0.843 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
93. COX7A2L ENSGALG00000037996 13646 0.842 - - - - - - 0.842 - - - cytochrome c oxidase subunit 7A2 like [Source:NCBI gene;Acc:421392]
94. LATS2 4776 0.842 - - - - - - 0.842 - - - large tumor suppressor kinase 2
95. EIF4G3 ENSGALG00000010084 5881 0.841 - - - - - - 0.841 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
96. SNRPF ENSGALG00000011409 23557 0.84 - - - - - - 0.840 - - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
97. XRN1 ENSGALG00000002706 4014 0.84 - - - - - - 0.840 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
98. MYST2 MYST2 8078 0.84 - - - - - - 0.840 - - -
99. MRE11A MRE11A 5754 0.839 - - - - - - 0.839 - - -
100. SRSF11 ENSGALG00000011305 10435 0.838 0.838 - - - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]

There are 219 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA