Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ATG4B

Gene Name Gene ID Reads Annotation
ATG4B ENSGALG00000006298 2288 autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]











Genes with expression patterns similar to ATG4B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. ATG4B ENSGALG00000006298 2288 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]
2. SNORA31 SNORA31 183 1.763 - - - 0.886 - - 0.877 - - -
3. NUP205 ENSGALG00000011662 4157 1.734 - - - 0.818 - - 0.916 - - - nucleoporin 205
4. ZNF142 ENSGALG00000011393 2078 1.705 - - - - - - 0.944 - - 0.761 zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
5. CANX ENSGALG00000032148 11297 1.697 - - - 0.825 - - 0.872 - - - calnexin [Source:NCBI gene;Acc:416288]
6. TAF8 ENSGALG00000003498 2071 1.669 - - - 0.745 - - 0.924 - - - TATA-box binding protein associated factor 8 [Source:NCBI gene;Acc:419929]
7. CSTF3 ENSGALG00000011685 4711 1.657 - - - - - - 0.863 - - 0.794 cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
8. CHCHD3 ENSGALG00000006489 18592 1.648 - - - 0.895 - - 0.753 - - - coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21906]
9. CACYBP ENSGALG00000004554 7320 1.635 - - - 0.885 - - 0.750 - - - calcyclin binding protein [Source:HGNC Symbol;Acc:HGNC:30423]
10. DBNDD2 ENSGALG00000003921 8301 1.626 - - - 0.814 - - 0.812 - - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
11. ZFYVE19 ENSGALG00000008460 2750 1.6 - - - - - - 0.892 0.708 - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
12. CMSS1 ENSGALG00000015267 2954 1.596 - - - 0.823 - - 0.773 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
13. PHACTR4 ENSGALG00000042485 3523 1.576 - - - 0.725 - - 0.851 - - - phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:HGNC:25793]
14. RNF8 ENSGALG00000023256 5495 1.567 - - - 0.867 - - - - - 0.700 ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
15. YPEL5 ENSGALG00000009047 3308 1.561 - - - 0.755 - - - - - 0.806 yippee like 5 [Source:NCBI gene;Acc:421299]
16. LRP12 ENSGALG00000033630 2534 1.557 - - - 0.773 - - 0.784 - - - LDL receptor related protein 12 [Source:HGNC Symbol;Acc:HGNC:31708]
17. ADARB1 ENSGALG00000007527 2480 1.548 - - - 0.769 - - 0.779 - - - adenosine deaminase, RNA specific B1 [Source:NCBI gene;Acc:374087]
18. YIPF6 ENSGALG00000035973 3333 1.543 - - - 0.771 - - - - - 0.772 Yip1 domain family member 6 [Source:HGNC Symbol;Acc:HGNC:28304]
19. GARNL3 ENSGALG00000000847 3423 1.528 - - - 0.750 - - - - - 0.778 GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
20. PHF2 ENSGALG00000039208 2003 1.525 - - - 0.815 - - - - - 0.710 PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
21. MED17 ENSGALG00000017218 5821 1.518 - - - 0.702 - - - - - 0.816 mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
22. TRIM24 ENSGALG00000012823 2725 1.512 - - - 0.773 - - - - - 0.739 tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
23. CDC42BPB ENSGALG00000011432 8220 1.491 - - - 0.752 - - - 0.739 - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
24. ZCCHC2 ENSGALG00000012889 3163 1.49 - - - 0.768 - - 0.722 - - - zinc finger CCHC-type containing 2 [Source:HGNC Symbol;Acc:HGNC:22916]
25. MRPL55 5995 1.482 - - - 0.766 - - - - - 0.716 mitochondrial ribosomal protein L55
26. HTATSF1 ENSGALG00000006410 3526 1.471 - - - 0.738 - - 0.733 - - - HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:HGNC:5276]
27. IMPA2 ENSGALG00000013814 4202 1.447 - - - 0.727 - - - - - 0.720 inositol monophosphatase 2 [Source:HGNC Symbol;Acc:HGNC:6051]
28. NNT ENSGALG00000014869 8496 1.443 - - - - - - - 0.719 - 0.724 nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
29. SIPA1L2 ENSGALG00000037506 3651 1.441 - - - 0.732 - - - - - 0.709 signal induced proliferation associated 1 like 2 [Source:HGNC Symbol;Acc:HGNC:23800]
30. ARHGAP19 ENSGALG00000007609 3655 1.428 - - - - - - 0.700 - - 0.728 Rho GTPase activating protein 19 [Source:NCBI gene;Acc:423846]
31. SUCLA2 ENSGALG00000016993 4735 1.413 - - - 0.700 - - - 0.713 - - succinate-CoA ligase ADP-forming beta subunit [Source:NCBI gene;Acc:418857]
32. UCH-L1 UCH-L1 12697 0.952 - - - - - - 0.952 - - -
33. NDUFV3 ENSGALG00000022813 4456 0.941 - - - - - - 0.941 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
34. KANK4 ENSGALG00000010953 726 0.939 - - - - - - 0.939 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
35. ENSGALG00000015857 ENSGALG00000015857 238 0.932 - - - - - - 0.932 - - -
36. C13H5ORF41 C13H5ORF41 1051 0.932 - - - - - - 0.932 - - -
37. PARD3B ENSGALG00000042645 2893 0.931 - - - - - - 0.931 - - - par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
38. RAB3IP ENSGALG00000009959 1652 0.93 - - - - - - 0.930 - - - RAB3A interacting protein, transcript variant X1
39. ECHDC3 ENSGALG00000006690 1299 0.93 - - - - - - 0.930 - - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
40. MBNL2 ENSGALG00000016890 3162 0.927 - - - - - - 0.927 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
41. NAT9 ENSGALG00000007723 2098 0.915 - - - - - - 0.915 - - - N-acetyltransferase 9 (putative), transcript variant X7
42. DBN1 ENSGALG00000033405 216 0.914 - - - 0.914 - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
43. BRD1 ENSGALG00000029379 6047 0.914 - - - - - - 0.914 - - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
44. RFT1 ENSGALG00000001945 2446 0.912 - - - - - - 0.912 - - - RFT1 homolog [Source:NCBI gene;Acc:770487]
45. VPS13B 2293 0.91 - - - 0.910 - - - - - - vacuolar protein sorting 13 homolog B
46. SUGP1 ENSGALG00000042132 2771 0.906 - - - - - - 0.906 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
47. SLC25A1 ENSGALG00000041760 4744 0.906 - - - - - - 0.906 - - - solute carrier family 25 member 1, transcript variant X2
48. VWDE ENSGALG00000042443 160 0.906 - - - 0.906 - - - - - - von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
49. LFNG ENSGALG00000038515 5178 0.905 - - - - - - 0.905 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
50. HELLS ENSGALG00000005451 7094 0.905 - - - - - - 0.905 - - - helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
51. GFPT2 ENSGALG00000039705 562 0.905 - - - 0.905 - - - - - - glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]
52. WIPI1 ENSGALG00000004215 3359 0.904 - - - - - - 0.904 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
53. FAM193A ENSGALG00000015667 3075 0.902 - - - - - - 0.902 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
54. ABCD2 ENSGALG00000042554 1607 0.901 - - - 0.901 - - - - - - ATP binding cassette subfamily D member 2 [Source:NCBI gene;Acc:417694]
55. ZBTB17 ENSGALG00000035352 280 0.901 - - - 0.901 - - - - - - zinc finger and BTB domain containing 17 [Source:NCBI gene;Acc:396541]
56. MLH3 ENSGALG00000010304 231 0.901 - - - 0.901 - - - - - - mutL homolog 3 [Source:HGNC Symbol;Acc:HGNC:7128]
57. KIAA1432 KIAA1432 1792 0.901 - - - 0.901 - - - - - -
58. ENSGALG00000027412 ENSGALG00000027412 202 0.899 - - - 0.899 - - - - - -
59. TBK1 ENSGALG00000009840 1650 0.899 - - - 0.899 - - - - - - TANK binding kinase 1 [Source:NCBI gene;Acc:417825]
60. WDR96 WDR96 255 0.898 - - - 0.898 - - - - - -
61. FRRS1 ENSGALG00000005418 332 0.897 - - - 0.897 - - - - - - ferric chelate reductase 1 [Source:HGNC Symbol;Acc:HGNC:27622]
62. CA3 CA3 200 0.897 - - - 0.897 - - - - - -
63. TRIM62 ENSGALG00000028437 5124 0.896 - - - 0.896 - - - - - - tripartite motif containing 62 [Source:HGNC Symbol;Acc:HGNC:25574]
64. NSG1 ENSGALG00000015010 5829 0.895 - - - - - - 0.895 - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
65. MRPS30 ENSGALG00000014874 3416 0.895 - - - 0.895 - - - - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
66. KIF6 ENSGALG00000010057 84 0.894 - - - 0.894 - - - - - - kinesin family member 6 [Source:HGNC Symbol;Acc:HGNC:21202]
67. ADCY9 ENSGALG00000007779 766 0.894 - - - 0.894 - - - - - - adenylate cyclase 9 [Source:NCBI gene;Acc:395339]
68. KIAA1462 1612 0.893 - - - 0.893 - - - - - - KIAA1462, transcript variant X4
69. TLCD1 ENSGALG00000003973 17569 0.893 - - - - - - 0.893 - - - TLC domain containing 1 [Source:NCBI gene;Acc:417575]
70. TGS1 ENSGALG00000015340 5897 0.891 - - - 0.891 - - - - - - trimethylguanosine synthase 1 [Source:NCBI gene;Acc:421126]
71. GPN3 ENSGALG00000003807 6320 0.891 - - - - - - 0.891 - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
72. PANK1 ENSGALG00000006431 2910 0.889 - - - 0.889 - - - - - - pantothenate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8598]
73. MCCC2L ENSGALG00000011255 889 0.889 - - - 0.889 - - - - - - methylcrotonoyl-Coenzyme A carboxylase 2-like [Source:NCBI gene;Acc:429115]
74. COPA ENSGALG00000009153 11618 0.888 - - - 0.888 - - - - - - coatomer protein complex subunit alpha [Source:NCBI gene;Acc:426906]
75. LSM10 ENSGALG00000002127 2519 0.888 - - - - - - 0.888 - - - LSM10, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:17562]
76. GTF3C4 ENSGALG00000031016 1221 0.887 - - - 0.887 - - - - - - general transcription factor IIIC subunit 4 [Source:HGNC Symbol;Acc:HGNC:4667]
77. WDSUB1 ENSGALG00000012574 2038 0.887 - - - - - - 0.887 - - - WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
78. KANK1 ENSGALG00000010158 3780 0.887 - - - - - - 0.887 - - - KN motif and ankyrin repeat domains 1 [Source:NCBI gene;Acc:395475]
79. PASK ENSGALG00000006016 3096 0.886 - - - 0.886 - - - - - - PAS domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:17270]
80. DHRS11 ENSGALG00000005403 2936 0.886 - - - 0.886 - - - - - - dehydrogenase/reductase 11 [Source:NCBI gene;Acc:395172]
81. ASRGL1 ENSGALG00000015949 403 0.885 - - - 0.885 - - - - - - asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
82. BAG5 ENSGALG00000031062 4498 0.884 - - - 0.884 - - - - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
83. ENTPD8L ENSGALG00000008936 731 0.883 - - - - - - 0.883 - - - ectonucleoside triphosphate diphosphohydrolase 8-like
84. UPK3BL ENSGALG00000001885 1650 0.882 - - - - - - 0.882 - - - uroplakin 3B-like
85. HINT3 ENSGALG00000044342 5674 0.882 - - - 0.882 - - - - - - histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
86. PAM16 9684 0.882 - - - - - - 0.882 - - - presequence translocase associated motor 16 homolog, transcript variant X2
87. PRKD1 ENSGALG00000009900 2094 0.881 - - - 0.881 - - - - - - protein kinase D1 [Source:NCBI gene;Acc:423302]
88. RNPC3 ENSGALG00000005162 269 0.881 - - - 0.881 - - - - - - RNA binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:HGNC:18666]
89. IK ENSGALG00000037172 12100 0.881 - - - - - - 0.881 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
90. MXRA5 ENSGALG00000016635 352 0.88 - - - - - - 0.880 - - - matrix remodeling associated 5 [Source:HGNC Symbol;Acc:HGNC:7539]
91. METTL24 ENSGALG00000041120 60 0.88 - - - - - - 0.880 - - - methyltransferase like 24 [Source:HGNC Symbol;Acc:HGNC:21566]
92. SCUBE1 ENSGALG00000014178 91 0.88 - - - - - - 0.880 - - - signal peptide, CUB domain and EGF like domain containing 1, transcript variant X4
93. TCTE1 ENSGALG00000010165 65 0.88 - - - - - - 0.880 - - - t-complex-associated-testis-expressed 1 [Source:HGNC Symbol;Acc:HGNC:11693]
94. HEMK1 ENSGALG00000002253 40 0.88 - - - - - - 0.880 - - - HemK methyltransferase family member 1 [Source:HGNC Symbol;Acc:HGNC:24923]
95. GRB14 ENSGALG00000020703 42 0.88 - - - - - - 0.880 - - - growth factor receptor bound protein 14 [Source:HGNC Symbol;Acc:HGNC:4565]
96. SLC25A21 ENSGALG00000010117 536 0.879 - - - - - - 0.879 - - - solute carrier family 25 member 21 [Source:HGNC Symbol;Acc:HGNC:14411]
97. HPS5 ENSGALG00000027716 2466 0.879 - - - 0.879 - - - - - - HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
98. ENSGALG00000026925 ENSGALG00000026925 119 0.879 - - - - - - 0.879 - - -
99. DIEXF ENSGALG00000009887 4782 0.879 - - - - - - 0.879 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
100. PRDM4 ENSGALG00000012619 876 0.879 - - - 0.879 - - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]

There are 656 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA