Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ATF4

Gene Name Gene ID Reads Annotation
ATF4 ENSGALG00000012135 53361 activating transcription factor 4 [Source:NCBI gene;Acc:395693]











Genes with expression patterns similar to ATF4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. ATF4 ENSGALG00000012135 53361 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 activating transcription factor 4 [Source:NCBI gene;Acc:395693]
2. HNRNPA0 ENSGALG00000006160 54117 1.433 - - - - 0.729 - - - - 0.704 heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]
3. PKM ENSGALG00000001992 93960 1.43 - 0.704 - - - - - - - 0.726 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
4. TRA2B ENSGALG00000006531 40566 0.995 - - - - - - 0.995 - - - transformer 2 beta homolog (Drosophila) [Source:NCBI gene;Acc:395403]
5. gga-mir-762 ENSGALG00000025437 24823 0.99 - - - - - - 0.990 - - - gga-mir-762 [Source:miRBase;Acc:MI0008209]
6. ENSGALG00000021694 ENSGALG00000021694 26011 0.988 - - - - - - 0.988 - - -
7. CHMP4B ENSGALG00000002095 17422 0.988 - - - - - - 0.988 - - - charged multivesicular body protein 4B [Source:NCBI gene;Acc:419150]
8. CWC15 ENSGALG00000017207 30922 0.987 - - - - - - 0.987 - - - CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
9. BRT-1 BRT-1 26083 0.987 - - - - - - 0.987 - - -
10. EEF1E1 ENSGALG00000012781 22615 0.987 - - - - - - 0.987 - - - eukaryotic translation elongation factor 1 epsilon 1
11. UBE2C ENSGALG00000026380 27639 0.987 - - - - - - 0.987 - - - ubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]
12. KIF2A ENSGALG00000014737 16391 0.985 - - - - - - 0.985 - - - kinesin heavy chain member 2A [Source:NCBI gene;Acc:427156]
13. RPL39 ENSGALG00000008620 63315 0.985 - - - - - - 0.985 - - - ribosomal protein L39 [Source:NCBI gene;Acc:374132]
14. AURKAIP1 ENSGALG00000001555 14715 0.985 - - - - - - 0.985 - - - aurora kinase A interacting protein 1 [Source:NCBI gene;Acc:419415]
15. AP2M1 ENSGALG00000008432 16249 0.983 - - - - - - 0.983 - - - adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
16. HSPA14 ENSGALG00000035201 7372 0.982 - - - - - - 0.982 - - - heat shock protein family A (Hsp70) member 14
17. MTX2 ENSGALG00000009264 17304 0.982 - - - - - - 0.982 - - - metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
18. C1H21ORF33 ENSGALG00000019171 8910 0.982 - - - - - - 0.982 - - - chromosome 1 open reading frame, human C21orf33 [Source:NCBI gene;Acc:418552]
19. ARCN1 ENSGALG00000007430 21499 0.982 - - - - - - 0.982 - - - archain 1 [Source:NCBI gene;Acc:770561]
20. PSMA7 ENSGALG00000030411 42436 0.982 - - - - - - 0.982 - - - proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
21. PRRX1 ENSGALG00000003324 4859 0.982 - - - - - - 0.982 - - - paired related homeobox 1 [Source:NCBI gene;Acc:373941]
22. MAPKAPK2 ENSGALG00000000883 6174 0.981 - - - - - - 0.981 - - - mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
23. DHX36 ENSGALG00000043082 17619 0.981 - - - - - - 0.981 - - - DEAH-box helicase 36 [Source:HGNC Symbol;Acc:HGNC:14410]
24. TDP2 ENSGALG00000013637 6595 0.981 - - - - - - 0.981 - - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
25. NAP1L4 ENSGALG00000006446 10868 0.981 - - - - - - 0.981 - - - nucleosome assembly protein 1 like 4 [Source:NCBI gene;Acc:423087]
26. MRPS27 ENSGALG00000015002 6541 0.98 - - - - - - 0.980 - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
27. CBX3 ENSGALG00000011038 40977 0.98 - - - - - - 0.980 - - - chromobox 3 [Source:NCBI gene;Acc:395355]
28. KIAA0922 4430 0.979 - - - - - - 0.979 - - - KIAA0922, transcript variant X4
29. UTP14A ENSGALG00000024039 8532 0.979 - - - - - - 0.979 - - - UTP14A small subunit processome component
30. ENSGALG00000001861 ENSGALG00000001861 10150 0.979 - - - - - - 0.979 - - -
31. THBS4 ENSGALG00000014804 4228 0.979 - - - - - - 0.979 - - - Gallus gallus thrombospondin 4 (THBS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001321549]
32. ECE-1 ECE-1 3057 0.978 - - - - - - 0.978 - - -
33. PRRC2B 1997 0.978 - - - - - - 0.978 - - - proline rich coiled-coil 2B, transcript variant X12
34. WDYHV1 ENSGALG00000030059 2961 0.978 - - - - - - 0.978 - - - WDYHV motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25490]
35. DNMT3B ENSGALG00000041461 12959 0.978 - - - - - - 0.978 - - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
36. PIK3C2B ENSGALG00000037043 4522 0.978 - - - - - - 0.978 - - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
37. TUSC3 ENSGALG00000013674 2848 0.978 - - - - - - 0.978 - - - tumor suppressor candidate 3 [Source:HGNC Symbol;Acc:HGNC:30242]
38. RAP1GDS1 ENSGALG00000012222 10078 0.978 - - - - - - 0.978 - - - rap1 GTPase-GDP dissociation stimulator 1 [Source:NCBI gene;Acc:422701]
39. GBX-1 GBX-1 1430 0.977 - - - - - - 0.977 - - -
40. DYNLRB1 ENSGALG00000034509 28361 0.975 - - - - - - 0.975 - - - dynein light chain roadblock-type 1
41. RPL19 ENSGALG00000001658 277294 0.928 - - - - - - 0.928 - - - ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. ANP32B ENSGALG00000037483 190705 0.916 - - - - - - 0.916 - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
43. VAMP7 ENSGALG00000007476 4173 0.867 - - - - - - - 0.867 - - vesicle associated membrane protein 7 [Source:NCBI gene;Acc:422297]
44. NSA2 ENSGALG00000014942 45193 0.846 - - - - - - 0.846 - - - NSA2, ribosome biogenesis homolog [Source:NCBI gene;Acc:427206]
45. AHCY ENSGALG00000033677 35555 0.845 - - - - - - 0.845 - - - adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
46. NUCKS1 ENSGALG00000000708 80882 0.842 - - - - - - 0.842 - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
47. FN1 ENSGALG00000003578 37024 0.835 - - - - - - 0.835 - - - fibronectin 1 [Source:NCBI gene;Acc:396133]
48. TALDO1 ENSGALG00000037195 30673 0.795 - - - - - - - 0.795 - - transaldolase 1 [Source:NCBI gene;Acc:423019]
49. C1QTNF3 ENSGALG00000027887 8646 0.795 - - - - - - 0.795 - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
50. HMGN5 ENSGALG00000007131 171006 0.791 - - - - - - 0.791 - - - high mobility group nucleosome binding domain 5, transcript variant X1
51. SNRNP40 ENSGALG00000000615 32298 0.785 - - - - 0.785 - - - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
52. YTHDF2 ENSGALG00000034831 15118 0.784 - - - - - - 0.784 - - - YTH N6-methyladenosine RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:31675]
53. GSR ENSGALG00000037781 8043 0.781 - - - - - - - 0.781 - - glutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]
54. SIAH1 ENSGALG00000003916 6682 0.78 - - - - - - 0.780 - - - siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:10857]
55. HMGN2 HMGN2 158543 0.773 - 0.773 - - - - - - - -
56. HRAS1 HRAS1 7988 0.761 - - - - - - - 0.761 - -
57. RPS15A ENSGALG00000006771 287037 0.758 - - - - - - 0.758 - - - ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. RPS11 ENSGALG00000017299 265862 0.751 - - - - - - 0.751 - - - ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. NONO ENSGALG00000005507 68606 0.743 - - - - - - 0.743 - - - non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
60. MED6 ENSGALG00000029743 9414 0.739 - - - - - - - - 0.739 - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
61. E2F1 ENSGALG00000003045 5604 0.739 - - - - - 0.739 - - - - E2F transcription factor 1 [Source:NCBI gene;Acc:396142]
62. RPL27 ENSGALG00000002837 302752 0.739 - - - - - - 0.739 - - - ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. ALDOC ENSGALG00000026077 106910 0.73 - - - - - - - - - 0.730 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. NLK ENSGALG00000005699 9066 0.726 - - - - - - - 0.726 - - nemo like kinase [Source:HGNC Symbol;Acc:HGNC:29858]
65. HMBS ENSGALG00000042939 13360 0.725 - - - - - - 0.725 - - - hydroxymethylbilane synthase [Source:HGNC Symbol;Acc:HGNC:4982]
66. SDC1 ENSGALG00000016480 13737 0.724 - - - - - - 0.724 - - - syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
67. CYC CYC 8740 0.724 - - - - - - - 0.724 - -
68. ACTG1_1 ENSGALG00000001381 64662 0.716 - - - - - - - - - 0.716 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
69. SLC25A6 ENSGALG00000016691 76738 0.712 - - - - - - - - - 0.712 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
70. PRDX3 ENSGALG00000009369 47693 0.71 - - - - 0.710 - - - - - peroxiredoxin 3 [Source:HGNC Symbol;Acc:HGNC:9354]
71. ZDHHC14 ENSGALG00000013695 2648 0.709 - - - - - - - 0.709 - - zinc finger DHHC-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20341]
72. DACT1 ENSGALG00000012023 1008 0.707 - - - - - - - 0.707 - - dishevelled binding antagonist of beta catenin 1 [Source:NCBI gene;Acc:723789]
73. PALB2 ENSGALG00000006078 1549 0.707 - - - - - - - 0.707 - - partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:HGNC:26144]
74. TP73 ENSGALG00000001006 335 0.707 - - - - - - - 0.707 - - tumor protein p73 [Source:HGNC Symbol;Acc:HGNC:12003]
75. NUMA1 ENSGALG00000001258 8406 0.706 - - - - - - - 0.706 - - nuclear mitotic apparatus protein 1 [Source:NCBI gene;Acc:768717]
76. KIF21A ENSGALG00000007098 5919 0.706 - - - - - - - 0.706 - - kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
77. IQCK ENSGALG00000028197 596 0.706 - - - - - - - 0.706 - - IQ motif containing K [Source:HGNC Symbol;Acc:HGNC:28556]
78. NHLRC1 ENSGALG00000012688 1476 0.705 - - - - - - - 0.705 - - NHL repeat containing E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21576]
79. ODC1 ENSGALG00000016444 20119 0.705 - - - - - - - - - 0.705 ornithine decarboxylase 1 [Source:NCBI gene;Acc:421937]
80. RFWD2 1215 0.705 - - - - - - - 0.705 - - ring finger and WD repeat domain 2, transcript variant X6
81. HSPA5 ENSGALG00000001000 40342 0.705 - - - - - - 0.705 - - - heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
82. COMT ENSGALG00000002024 2483 0.704 - - - - - - - 0.704 - - catechol-O-methyltransferase [Source:HGNC Symbol;Acc:HGNC:2228]
83. CREG1 ENSGALG00000040426 1188 0.704 - - - - - - - 0.704 - - cellular repressor of E1A stimulated genes 1 [Source:NCBI gene;Acc:768680]
84. MAN2C1 ENSGALG00000001615 2362 0.704 - - - - - - - 0.704 - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
85. RBMX ENSGALG00000006457 34009 0.703 - - - - 0.703 - - - - - RNA binding motif protein X-linked [Source:NCBI gene;Acc:422248]
86. FOCAD ENSGALG00000015071 3677 0.702 - - - - - - - 0.702 - - focadhesin [Source:NCBI gene;Acc:427233]
87. DDX54 ENSGALG00000007490 8729 0.702 - - - - - - - 0.702 - - DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
88. COMMD8 ENSGALG00000026279 13509 0.702 - - - - - - - 0.702 - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
89. HGS ENSGALG00000007224 3487 0.701 - - - - - - - 0.701 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:HGNC Symbol;Acc:HGNC:4897]
90. ADAT1 ENSGALG00000000908 1484 0.701 - - - - - - - 0.701 - - adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
91. ASAH1 ENSGALG00000026364 2783 0.7 - - - - - - - 0.700 - - N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:NCBI gene;Acc:422727]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA