Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for APOB

Gene Name Gene ID Reads Annotation
APOB ENSGALG00000016491 34 apolipoprotein B [Source:NCBI gene;Acc:396535]











Genes with expression patterns similar to APOB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. APOB ENSGALG00000016491 34 5 - - 1.000 1.000 1.000 1.000 - 1.000 - - apolipoprotein B [Source:NCBI gene;Acc:396535]
2. MYO5C ENSGALG00000033198 36 1.616 - - - - - 0.808 - 0.808 - - myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
3. PCGF2 ENSGALG00000018815 38 1.616 - - - - - 0.808 - 0.808 - - polycomb group ring finger 2 [Source:NCBI gene;Acc:425919]
4. gga-mir-6569 ENSGALG00000026551 10 1.6 - - 0.838 - 0.762 - - - - - gga-mir-6569 [Source:miRBase;Acc:MI0022387]
5. TMEM45BL ENSGALG00000024296 5 1.552 - - - - - 0.786 - 0.766 - - transmembrane protein 45B-like
6. ANKH ENSGALG00000012964 273 1.522 - - 0.783 0.739 - - - - - - ANKH inorganic pyrophosphate transport regulator [Source:NCBI gene;Acc:420917]
7. ZNF131 ENSGALG00000033435 56 1.49 - - - - 0.762 - - 0.728 - - zinc finger protein 131, transcript variant X1
8. NARS2 ENSGALG00000017262 12 1 - - - - - - - 1.000 - - asparaginyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:26274]
9. TMEM132D ENSGALG00000002671 12 1 - - - - - - - 1.000 - - transmembrane protein 132D, transcript variant X6
10. CCL1 ENSGALG00000002329 2 1 - - - - - - - 1.000 - - C-C motif chemokine ligand 1 [Source:NCBI gene;Acc:395552]
11. RAPSN ENSGALG00000008100 53 1 - - - - - - - 1.000 - - receptor associated protein of the synapse [Source:NCBI gene;Acc:395986]
12. ENSGALG00000013409 ENSGALG00000013409 4 1 - - - - - - - 1.000 - -
13. TRNAU1AP ENSGALG00000001310 7 1 - - - - - - - 1.000 - - tRNA selenocysteine 1 associated protein 1, transcript variant X4
14. SAPCD2 12 1 - - - - - - - 1.000 - - suppressor APC domain containing 2, transcript variant X1
15. NR0B2 ENSGALG00000000887 2 1 - - - - - - - 1.000 - - nuclear receptor subfamily 0 group B member 2 [Source:NCBI gene;Acc:768353]
16. ALK 2 1 - - - - - - - 1.000 - - anaplastic lymphoma receptor tyrosine kinase, transcript variant X3
17. MBD5 ENSGALG00000012449 27 0.999 - - - - - - - 0.999 - - methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
18. FAM171A1 ENSGALG00000008764 349 0.998 - - - - - - - 0.998 - - family with sequence similarity 171 member A1 [Source:HGNC Symbol;Acc:HGNC:23522]
19. OSMR ENSGALG00000003747 4 0.996 - - - - - - - 0.996 - - oncostatin M receptor [Source:HGNC Symbol;Acc:HGNC:8507]
20. ENTPD5 ENSGALG00000010202 69 0.995 - - - - - - - 0.995 - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
21. ENSGALG00000005812 ENSGALG00000005812 40 0.995 - - - - - - - 0.995 - -
22. DHTKD1 ENSGALG00000003674 300 0.991 - - - - - - - 0.991 - - dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
23. CCDC28A ENSGALG00000013834 8 0.981 - - - - - - - 0.981 - - coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:HGNC:21098]
24. ARHGAP28 ENSGALG00000014758 34 0.977 - - - - - - - 0.977 - - Rho GTPase activating protein 28 [Source:HGNC Symbol;Acc:HGNC:25509]
25. CD164 30 0.977 - - - - - - - 0.977 - - CD164 molecule, transcript variant X2
26. ABLIM2 ENSGALG00000043448 48 0.971 - - - - - - - 0.971 - - actin binding LIM protein family member 2 [Source:HGNC Symbol;Acc:HGNC:19195]
27. AAK1 ENSGALG00000041911 16 0.97 - - - - - - - 0.970 - - AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
28. F13A1 ENSGALG00000012802 16 0.964 - - - - - - - 0.964 - - coagulation factor XIII A chain [Source:NCBI gene;Acc:395420]
29. YWHAG ENSGALG00000017358 203 0.964 - - - - - - - 0.964 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma [Source:NCBI gene;Acc:427820]
30. KNG1 ENSGALG00000046159 17 0.963 - - - 0.963 - - - - - - kininogen 1 [Source:HGNC Symbol;Acc:HGNC:6383]
31. ACOT9 ENSGALG00000016351 330 0.963 - - - - - - - 0.963 - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
32. FADS2 ENSGALG00000007178 116 0.96 - - - - - - - 0.960 - - fatty acid desaturase 2 [Source:NCBI gene;Acc:423122]
33. SS18L1 ENSGALG00000005145 14 0.958 - - - - - - - 0.958 - - SS18L1, nBAF chromatin remodeling complex subunit [Source:HGNC Symbol;Acc:HGNC:15592]
34. PGAM1 ENSGALG00000007606 384 0.957 - - - - - - - 0.957 - - phosphoglycerate mutase 1 [Source:NCBI gene;Acc:428969]
35. ENSGALG00000010054 ENSGALG00000010054 81 0.955 - - - - - - - 0.955 - -
36. S100A13 ENSGALG00000046614 201 0.953 - - - - - - - 0.953 - - S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]
37. MBOAT2 ENSGALG00000016412 194 0.948 - - - - - - - 0.948 - - membrane bound O-acyltransferase domain containing 2 [Source:NCBI gene;Acc:421925]
38. ENSGALG00000027621 ENSGALG00000027621 863 0.947 - - - 0.947 - - - - - -
39. SLC25A19 ENSGALG00000008011 68 0.947 - - - - - - - 0.947 - - solute carrier family 25 member 19 [Source:HGNC Symbol;Acc:HGNC:14409]
40. FTO ENSGALG00000041036 11 0.946 - - 0.946 - - - - - - - FTO, alpha-ketoglutarate dependent dioxygenase [Source:NCBI gene;Acc:415718]
41. CUTA ENSGALG00000001620 76 0.943 - - - - - - - 0.943 - - cutA divalent cation tolerance homolog
42. SUGP2 ENSGALG00000003047 227 0.934 - - - - - - - 0.934 - - SURP and G-patch domain containing 2 [Source:NCBI gene;Acc:420113]
43. CDH13 ENSGALG00000005483 93 0.928 - - - - - 0.928 - - - - cadherin 13 [Source:NCBI gene;Acc:414849]
44. GPR174 ENSGALG00000004111 16 0.927 - - - - - - - 0.927 - - G protein-coupled receptor 174 [Source:NCBI gene;Acc:422146]
45. YPEL4 ENSGALG00000007374 23 0.926 - - - - - - - 0.926 - - yippee like 4 [Source:HGNC Symbol;Acc:HGNC:18328]
46. LCAT ENSGALG00000028928 484 0.92 - - - 0.920 - - - - - - lecithin-cholesterol acyltransferase [Source:NCBI gene;Acc:396136]
47. NFATC2 ENSGALG00000007963 15 0.919 - - 0.919 - - - - - - - nuclear factor of activated T cells 2 [Source:HGNC Symbol;Acc:HGNC:7776]
48. CDH6 ENSGALG00000012917 17 0.919 - - 0.919 - - - - - - - cadherin 6 [Source:NCBI gene;Acc:414842]
49. ENSGALG00000013079 ENSGALG00000013079 12 0.919 - - 0.919 - - - - - - -
50. SH3TC2 2 0.919 - - 0.919 - - - - - - - SH3 domain and tetratricopeptide repeats 2
51. TP63 ENSGALG00000007324 6 0.919 - - 0.919 - - - - - - - tumor protein p63 [Source:NCBI gene;Acc:374269]
52. ENSGALG00000010590 ENSGALG00000010590 6 0.919 - - 0.919 - - - - - - -
53. ENSGALG00000002367 ENSGALG00000002367 10 0.919 - - 0.919 - - - - - - -
54. STAR ENSGALG00000003242 4 0.919 - - 0.919 - - - - - - - steroidogenic acute regulatory protein [Source:NCBI gene;Acc:395421]
55. LYG2 ENSGALG00000016761 7 0.919 - - 0.919 - - - - - - - lysozyme g2 [Source:NCBI gene;Acc:395708]
56. ENSGALG00000021824 ENSGALG00000021824 6 0.919 - - 0.919 - - - - - - -
57. NEIL2 ENSGALG00000016664 4 0.919 - - 0.919 - - - - - - - nei like DNA glycosylase 2 [Source:NCBI gene;Acc:422037]
58. PLEKHJ1 ENSGALG00000000835 55 0.917 - - - - - - - 0.917 - - pleckstrin homology domain containing J1 [Source:NCBI gene;Acc:428324]
59. TTR ENSGALG00000015143 9764 0.908 - - - 0.908 - - - - - - transthyretin [Source:NCBI gene;Acc:396277]
60. PPIL3 ENSGALG00000008228 150 0.9 - - - - - - - 0.900 - - peptidylprolyl isomerase like 3 [Source:NCBI gene;Acc:424075]
61. SERPINC1 ENSGALG00000004591 68 0.893 - - - 0.893 - - - - - - Gallus gallus serpin family C member 1 (SERPINC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001353945]
62. ZDHHC3 ENSGALG00000029266 11 0.893 - - 0.893 - - - - - - - zinc finger DHHC-type containing 3 [Source:HGNC Symbol;Acc:HGNC:18470]
63. SRPX2 ENSGALG00000006796 32 0.892 - - - - - - - 0.892 - - sushi repeat containing protein X-linked 2 [Source:HGNC Symbol;Acc:HGNC:30668]
64. FGA ENSGALG00000009266 291 0.891 - - - 0.891 - - - - - - fibrinogen alpha chain [Source:NCBI gene;Acc:396307]
65. PRPF19 ENSGALG00000040048 168 0.89 - - 0.890 - - - - - - - pre-mRNA processing factor 19 [Source:NCBI gene;Acc:430767]
66. HPD ENSGALG00000004343 244 0.886 - - - 0.886 - - - - - - 4-hydroxyphenylpyruvate dioxygenase [Source:NCBI gene;Acc:416852]
67. DOCK4 ENSGALG00000009480 61 0.886 - - - - - - - 0.886 - - dedicator of cytokinesis 4 [Source:HGNC Symbol;Acc:HGNC:19192]
68. TMEM56 ENSGALG00000005580 10 0.885 - - - - - - - 0.885 - - transmembrane protein 56 [Source:NCBI gene;Acc:424483]
69. ZBTB41 ENSGALG00000002305 97 0.884 - - 0.884 - - - - - - - zinc finger and BTB domain containing 41, transcript variant X2
70. ZMAT1 ZMAT1 12 0.883 - - - - - - - 0.883 - -
71. CLDN20 ENSGALG00000027634 25 0.881 - - 0.881 - - - - - - - claudin 20 [Source:HGNC Symbol;Acc:HGNC:2042]
72. FREM1 ENSGALG00000005426 61 0.872 - - - - - 0.872 - - - - FRAS1 related extracellular matrix 1 [Source:HGNC Symbol;Acc:HGNC:23399]
73. GAL10 GAL10 33355 0.872 - - - 0.872 - - - - - -
74. PROX1 ENSGALG00000009791 1184 0.871 - - - 0.871 - - - - - - prospero homeobox 1 [Source:NCBI gene;Acc:395802]
75. RHOF ENSGALG00000039724 8 0.869 - - 0.869 - - - - - - - ras homolog family member F, filopodia associated [Source:NCBI gene;Acc:416848]
76. FAH ENSGALG00000006482 589 0.86 - - - 0.860 - - - - - - fumarylacetoacetate hydrolase [Source:NCBI gene;Acc:415482]
77. FASTKD1 ENSGALG00000009841 45 0.857 - - 0.857 - - - - - - - FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
78. SYNJ2BP ENSGALG00000009387, ENSGALG00000035537 124 0.855 - - 0.855 - - - - - - - synaptojanin 2 binding protein, transcript variant X2
79. ENSGALG00000026155 ENSGALG00000026155 49 0.855 - - - - - 0.855 - - - -
80. ANGPTL3 ENSGALG00000010978 335 0.854 - - - 0.854 - - - - - - angiopoietin like 3 [Source:NCBI gene;Acc:100189558]
81. CAMKK1 ENSGALG00000001617 64 0.854 - - - - - - - 0.854 - - calcium/calmodulin dependent protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:1469]
82. RHOV ENSGALG00000028047 75 0.854 - - - - - - - 0.854 - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
83. MFHAS1 ENSGALG00000011444 7 0.854 - - 0.854 - - - - - - - malignant fibrous histiocytoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:16982]
84. TNFRSF19 ENSGALG00000017119 25 0.852 - - 0.852 - - - - - - - TNF receptor superfamily member 19 [Source:NCBI gene;Acc:418943]
85. IL13RA1 ENSGALG00000044480 24 0.851 - - 0.851 - - - - - - - interleukin 13 receptor subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:5974]
86. CYP3A4 ENSGALG00000004436 75 0.848 - - - 0.848 - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
87. PINLYP ENSGALG00000026884 23 0.845 - - - - - - - 0.845 - - phospholipase A2 inhibitor and LY6/PLAUR domain containing
88. LRRC46 ENSGALG00000046384 28 0.843 - - - - - - - 0.843 - - leucine rich repeat containing 46 [Source:HGNC Symbol;Acc:HGNC:25047]
89. PTK2B ENSGALG00000016564 406 0.842 - - 0.842 - - - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
90. USP53 ENSGALG00000011990 12 0.841 - - - - - 0.841 - - - - ubiquitin specific peptidase 53 [Source:HGNC Symbol;Acc:HGNC:29255]
91. IL12RB1 28 0.841 - - - - - 0.841 - - - - interleukin 12 receptor subunit beta 1, transcript variant X4
92. ENSGALG00000028778 ENSGALG00000028778 47 0.84 - - - - - - - 0.840 - -
93. FAM21A FAM21A 251 0.84 - - - - - - - 0.840 - -
94. F2 ENSGALG00000008332 298 0.839 - - - 0.839 - - - - - - coagulation factor II, thrombin [Source:NCBI gene;Acc:395306]
95. FNIP2 ENSGALG00000020251 191 0.839 - - - - - - - 0.839 - - folliculin interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:29280]
96. NTN1 ENSGALG00000023626 12 0.839 - - - - - 0.839 - - - - netrin 1 [Source:NCBI gene;Acc:396389]
97. FGG ENSGALG00000009268 418 0.837 - - - 0.837 - - - - - - fibrinogen gamma chain [Source:NCBI gene;Acc:395837]
98. SNTG1 ENSGALG00000015248 23 0.836 - - - - - 0.836 - - - - syntrophin gamma 1 [Source:HGNC Symbol;Acc:HGNC:13740]
99. RPS6KA6 ENSGALG00000007097 94 0.835 - - - - - 0.835 - - - - ribosomal protein S6 kinase A6 [Source:HGNC Symbol;Acc:HGNC:10435]
100. EDRF1 26 0.834 - - 0.834 - - - - - - - erythroid differentiation regulatory factor 1

There are 149 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA