Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ALYREF

Gene Name Gene ID Reads Annotation
ALYREF ENSGALG00000007237 48479 Aly/REF export factor [Source:NCBI gene;Acc:769169]











Genes with expression patterns similar to ALYREF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. ALYREF ENSGALG00000007237 48479 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Aly/REF export factor [Source:NCBI gene;Acc:769169]
2. HMGN2 HMGN2 158543 2.397 - - - - - - - 0.863 0.756 0.778
3. HNRNPA0 ENSGALG00000006160 54117 2.238 - - - - - 0.773 - 0.756 - 0.709 heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]
4. SMC3 ENSGALG00000008585 16618 1.745 - - - - - - 0.836 0.909 - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
5. PAK1IP1 ENSGALG00000012724 10907 1.698 - - - - - - 0.988 - 0.710 - PAK1 interacting protein 1 [Source:NCBI gene;Acc:420850]
6. TCOF1 ENSGALG00000005535 24554 1.642 - - - - - 0.716 0.926 - - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
7. RFC5 ENSGALG00000026517 26113 1.54 - - - - 0.786 - - - 0.754 - replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]
8. PEBP1 ENSGALG00000007403 77502 1.525 - - - - - 0.770 - - 0.755 - phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
9. DCPS ENSGALG00000031143 10191 1.496 - - - - 0.750 0.746 - - - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
10. H2AFZ ENSGALG00000014023 117824 1.484 - - - - 0.749 - - - 0.735 - H2A histone family, member Z [Source:NCBI gene;Acc:426361]
11. U2AF1 ENSGALG00000016198 45027 1.446 0.701 - - - - - 0.745 - - - U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
12. PKM ENSGALG00000001992 93960 1.441 - - - 0.714 - - - - - 0.727 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
13. PLK1 ENSGALG00000006110 12892 0.996 - - - - - - 0.996 - - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
14. DHX15 ENSGALG00000014395 24041 0.995 - - - - - - 0.995 - - - DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
15. DNAJC2 ENSGALG00000008249 28064 0.995 - - - - - - 0.995 - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
16. UTRN ENSGALG00000012256 9980 0.995 - - - - - - 0.995 - - - utrophin [Source:HGNC Symbol;Acc:HGNC:12635]
17. PAPOLA ENSGALG00000033099 20532 0.995 - - - - - - 0.995 - - - poly(A) polymerase alpha [Source:NCBI gene;Acc:395878]
18. ETFA ENSGALG00000002925 24053 0.995 - - - - - - 0.995 - - - electron-transfer-flavoprotein, alpha polypeptide [Source:NCBI gene;Acc:415353]
19. COX4I1 68632 0.995 - - - - - - 0.995 - - - cytochrome c oxidase subunit 4I1, transcript variant X1
20. PTP4A1 ENSGALG00000016271 23953 0.995 - - - - - - 0.995 - - - protein tyrosine phosphatase type IVA, member 1 [Source:NCBI gene;Acc:421877]
21. ATOX1 ENSGALG00000004176 16486 0.994 - - - - - - 0.994 - - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
22. FAM63A 8470 0.994 - - - - - - 0.994 - - - family with sequence similarity 63 member A, transcript variant X2
23. GSTA GSTA 3130 0.994 - - - - - - 0.994 - - -
24. ENSGALG00000002595 ENSGALG00000002595 32163 0.994 - - - - - - 0.994 - - -
25. ZFP161 ZFP161 3538 0.993 - - - - - - 0.993 - - -
26. LGALS3 ENSGALG00000012173 3306 0.993 - - - - - - 0.993 - - - galectin 3 [Source:NCBI gene;Acc:373917]
27. COQ9 ENSGALG00000001184 10174 0.993 - - - - - - 0.993 - - - coenzyme Q9 [Source:NCBI gene;Acc:415636]
28. CCDC85A ENSGALG00000043080 7624 0.993 - - - - - - 0.993 - - - coiled-coil domain containing 85A [Source:HGNC Symbol;Acc:HGNC:29400]
29. CCNG1 ENSGALG00000001718 9873 0.993 - - - - - - 0.993 - - - cyclin G1 [Source:HGNC Symbol;Acc:HGNC:1592]
30. ENSGALG00000007210 ENSGALG00000007210 2203 0.993 - - - - - - 0.993 - - -
31. TXNRD3 ENSGALG00000039363 8016 0.993 - - - - - - 0.993 - - - thioredoxin reductase 3 [Source:NCBI gene;Acc:416031]
32. SFRP1 ENSGALG00000003473 5917 0.993 - - - - - - 0.993 - - - secreted frizzled related protein 1 [Source:NCBI gene;Acc:395237]
33. UQCR11 ENSGALG00000001096 25245 0.993 - - - - - - 0.993 - - - ubiquinol-cytochrome c reductase, complex III subunit XI [Source:NCBI gene;Acc:770135]
34. GCSH ENSGALG00000032679 29231 0.993 - - - - - - 0.993 - - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
35. ENSGALG00000016007 ENSGALG00000016007 62448 0.992 - - - - - - 0.992 - - -
36. FIG4 ENSGALG00000015070 3018 0.992 - - - - - - 0.992 - - - FIG4 phosphoinositide 5-phosphatase [Source:NCBI gene;Acc:421762]
37. SUMO1 ENSGALG00000008435 19847 0.99 - - - - - - 0.990 - - - small ubiquitin-like modifier 1 [Source:NCBI gene;Acc:373930]
38. TOMM70A TOMM70A 24085 0.988 - - - - - - 0.988 - - -
39. C5H11ORF58 C5H11ORF58 36659 0.987 - - - - - - 0.987 - - -
40. NOL6 ENSGALG00000030730 7191 0.98 - - - - - - 0.980 - - - nucleolar protein 6
41. C5ORF13 C5ORF13 50177 0.977 - - - - - - 0.977 - - -
42. YWHAB ENSGALG00000004143 40276 0.977 - - - - - - 0.977 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta [Source:NCBI gene;Acc:419190]
43. BSDC1 ENSGALG00000003405 3701 0.957 - - - - - - - 0.957 - - BSD domain containing 1 [Source:NCBI gene;Acc:419658]
44. gga-mir-3526 ENSGALG00000029121 41375 0.948 - - - - - - 0.948 - - - gga-mir-3526 [Source:miRBase;Acc:MI0015377]
45. SUCLG1 ENSGALG00000015961 14323 0.944 - - - - - - 0.944 - - - succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
46. CASP3 ENSGALG00000010638 11572 0.94 - - - - - - - 0.940 - - caspase 3 [Source:NCBI gene;Acc:395476]
47. EIF3D ENSGALG00000012529 40887 0.939 - - - - - - - 0.939 - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
48. CHMP5 ENSGALG00000013160 13347 0.939 - - - - - - - 0.939 - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
49. CHTOP ENSGALG00000042129 24112 0.936 - - - - - - - 0.936 - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
50. TMTC2 ENSGALG00000010975 7040 0.934 - - - - - - - 0.934 - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
51. RIC8A ENSGALG00000004191 6094 0.934 - - - - - - - 0.934 - - RIC8 guanine nucleotide exchange factor A [Source:NCBI gene;Acc:422987]
52. JKAMP ENSGALG00000012009 5781 0.933 - - - - - - - 0.933 - - JNK1/MAPK8-associated membrane protein [Source:NCBI gene;Acc:423530]
53. PDCD2L 4843 0.933 - - - - - - - 0.933 - - programmed cell death 2-like
54. RBFA ENSGALG00000036067 6542 0.933 - - - - - - - 0.933 - - ribosome binding factor A (putative) [Source:NCBI gene;Acc:420806]
55. RNF113A ENSGALG00000000538 3985 0.933 - - - - - - - 0.933 - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
56. DDX24 ENSGALG00000010884 5485 0.932 - - - - - - - 0.932 - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
57. CARKD CARKD 2914 0.932 - - - - - - - 0.932 - -
58. PGM1 ENSGALG00000011016 3391 0.932 - - - - - - - 0.932 - - phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
59. RRN3 ENSGALG00000041989 3934 0.932 - - - - - - - 0.932 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
60. ENSGALG00000010034 ENSGALG00000010034 3293 0.931 - - - - - - - 0.931 - -
61. GGA3 ENSGALG00000007992 3566 0.931 - - - - - - - 0.931 - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
62. ATL1 ENSGALG00000012339 3789 0.931 - - - - - - - 0.931 - - atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
63. UBALD1 ENSGALG00000007619 8536 0.931 - - - - - - - 0.931 - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
64. HBXIP HBXIP 8637 0.931 - - - - - - - 0.931 - -
65. FAM125B FAM125B 2953 0.931 - - - - - - - 0.931 - -
66. SCLT1 2397 0.93 - - - - - - - 0.930 - - sodium channel and clathrin linker 1, transcript variant X6
67. NPFF1 NPFF1 3177 0.93 - - - - - - - 0.930 - -
68. MADD ENSGALG00000008181 2273 0.93 - - - - - - - 0.930 - - MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]
69. KIAA0895L 1739 0.929 - - - - - - - 0.929 - - KIAA0895 like, transcript variant X4
70. FXN ENSGALG00000015108 1867 0.929 - - - - - - - 0.929 - - frataxin [Source:HGNC Symbol;Acc:HGNC:3951]
71. NECAP1 ENSGALG00000037656 5181 0.928 - - - - - - - 0.928 - - NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:HGNC:24539]
72. YTHDC2 2266 0.927 - - - - - - - 0.927 - - YTH domain containing 2, transcript variant X3
73. MMADHC ENSGALG00000012473 9026 0.925 - - - - - - - 0.925 - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
74. MRPS17 ENSGALG00000002379 30243 0.924 - - - - - - - 0.924 - - mitochondrial ribosomal protein S17 [Source:NCBI gene;Acc:417538]
75. ARHGAP11A ENSGALG00000009731 6817 0.923 - - - - - - - 0.923 - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
76. MAPRE1 ENSGALG00000006657 64346 0.922 - - - - - - - 0.922 - - microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
77. NOC4L ENSGALG00000002272 9644 0.905 - - - - - - - 0.905 - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
78. NDUFA2 ENSGALG00000040626 27899 0.9 - - - - - - - 0.900 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:NCBI gene;Acc:768860]
79. PRKG1 ENSGALG00000003805 4654 0.893 - - - - - - - 0.893 - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
80. SQLE ENSGALG00000036915 4172 0.891 - - - - - - - 0.891 - - squalene epoxidase [Source:NCBI gene;Acc:420335]
81. GCLM ENSGALG00000005782 15789 0.881 - - - - - - - 0.881 - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
82. CENPP ENSGALG00000004687 6707 0.879 - - - - - - - 0.879 - - centromere protein P [Source:NCBI gene;Acc:415952]
83. LOC419404 ENSGALG00000021676 12078 0.878 - - - - - - 0.878 - - - uncharacterized LOC419404
84. COL4A6 ENSGALG00000008266 6374 0.858 - - - - - - - 0.858 - - collagen type IV alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:2208]
85. UTP11L UTP11L 11927 0.855 - - - - - - - 0.855 - -
86. HMGB1 ENSGALG00000042875 83509 0.851 - - - - - - 0.851 - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
87. SEC11A ENSGALG00000037553 32123 0.851 - - - - - - - 0.851 - - SEC11 homolog A, signal peptidase complex subunit [Source:NCBI gene;Acc:415334]
88. TCEB1 TCEB1 17818 0.847 - - - - - - 0.847 - - -
89. ETF1 ENSGALG00000002262 14560 0.84 - - - - - - 0.840 - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
90. SNRPD1 ENSGALG00000041334 219195 0.839 - - - - 0.839 - - - - - small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
91. CWC15 ENSGALG00000017207 30922 0.837 - - - - - - - 0.837 - - CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
92. EI24 ENSGALG00000038097 24081 0.836 - - - - - 0.836 - - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
93. ENSGALG00000028649 ENSGALG00000028649 135970 0.835 - - - - - 0.835 - - - -
94. CALM CALM 85776 0.834 - - - - - - 0.834 - - -
95. ALDOC ENSGALG00000026077 106910 0.819 - - - - - 0.819 - - - - aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
96. PITX2 ENSGALG00000042492 20419 0.818 - - - - - - - 0.818 - - paired like homeodomain 2 [Source:NCBI gene;Acc:395862]
97. SH3BGRL ENSGALG00000007128 18708 0.813 - - - - - - 0.813 - - - SH3 domain binding glutamate rich protein like [Source:NCBI gene;Acc:422277]
98. ARGLU1 ENSGALG00000016855 25633 0.811 - - - - - - - 0.811 - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
99. SDOS SDOS 66125 0.808 - - - - - 0.808 - - - -
100. RTN4 ENSGALG00000029261 45730 0.808 - - - - - - - 0.808 - - reticulon 4 [Source:NCBI gene;Acc:378790]

There are 83 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA