Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ACTA1

Gene Name Gene ID Reads Annotation
ACTA1 ENSGALG00000011086 2543 actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]











Genes with expression patterns similar to ACTA1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. ACTA1 ENSGALG00000011086 2543 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]
2. ACTC1 ENSGALG00000009844 20914 3.376 0.869 - 0.882 0.852 0.773 - - - - - actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
3. MYL1 ENSGALG00000002907 1300 3.29 0.759 - 0.881 0.810 0.840 - - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
4. TPM1 ENSGALG00000003521 11894 3.209 0.814 - 0.751 0.837 0.807 - - - - - tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
5. gga-mir-7474 ENSGALG00000033766 5727 3.12 0.830 - 0.759 0.765 0.766 - - - - - gga-mir-7474 [Source:miRBase;Acc:MI0024147]
6. TNNC2 ENSGALG00000006835 2963 2.987 0.728 - 0.840 0.718 0.701 - - - - - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
7. MYH15 ENSGALG00000015358 6304 2.36 0.746 - - 0.809 0.805 - - - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
8. LIMCH1 ENSGALG00000014258 1987 1.807 - - 0.809 - - - - 0.998 - - LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
9. SERPINE2 ENSGALG00000005135 16108 1.778 - - 0.801 - - - - 0.977 - - serpin family E member 2 [Source:NCBI gene;Acc:424805]
10. TNNT3 ENSGALG00000006572 1652 1.664 - - 0.866 0.798 - - - - - - troponin T3, fast skeletal type [Source:NCBI gene;Acc:395761]
11. MYL2_1 ENSGALG00000004582 2367 1.653 - - 0.872 - 0.781 - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
12. TNNI1 ENSGALG00000000313 4069 1.644 0.822 - 0.822 - - - - - - - troponin I1, slow skeletal type [Source:HGNC Symbol;Acc:HGNC:11945]
13. MYL3 ENSGALG00000005448 3379 1.631 0.798 - 0.833 - - - - - - - myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
14. TRIM55 ENSGALG00000041327 1097 1.609 0.800 - 0.809 - - - - - - - tripartite motif containing 55 [Source:NCBI gene;Acc:420166]
15. MYBPC1 ENSGALG00000012783 317 1.603 - - 0.868 0.735 - - - - - - myosin binding protein C, slow type [Source:HGNC Symbol;Acc:HGNC:7549]
16. EN1 ENSGALG00000042389 3051 1.594 - - 0.844 - 0.750 - - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
17. RBM24 ENSGALG00000012712 4138 1.587 0.835 - 0.752 - - - - - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
18. ACTN2 ENSGALG00000014463 1724 1.566 0.826 - 0.740 - - - - - - - actinin alpha 2 [Source:NCBI gene;Acc:396263]
19. KLHL31 ENSGALG00000016309 1518 1.56 0.830 - 0.730 - - - - - - - kelch like family member 31 [Source:HGNC Symbol;Acc:HGNC:21353]
20. NEXN ENSGALG00000008945 1504 1.54 - - 0.797 0.743 - - - - - - nexilin F-actin binding protein [Source:HGNC Symbol;Acc:HGNC:29557]
21. GGMOXR1 GGMOXR1 6734 1.538 - - 0.795 - 0.743 - - - - -
22. ACBD7 ENSGALG00000019663 2328 1.528 - - 0.827 - - - 0.701 - - - acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
23. MYL2 ENSGALG00000004582 2245 1.512 0.791 - 0.721 - - - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
24. PKD2L2 ENSGALG00000006120 592 1.509 - - 0.775 0.734 - - - - - - polycystin 2 like 2, transient receptor potential cation channel [Source:HGNC Symbol;Acc:HGNC:9012]
25. UNC45B ENSGALG00000002186 399 1.491 0.702 - 0.789 - - - - - - - unc-45 myosin chaperone B [Source:HGNC Symbol;Acc:HGNC:14304]
26. TCF15 ENSGALG00000026276 3646 1.48 - - 0.778 0.702 - - - - - - transcription factor 15 [Source:NCBI gene;Acc:395788]
27. TMEM182 ENSGALG00000038936 274 1.476 - - 0.755 0.721 - - - - - - transmembrane protein 182 [Source:HGNC Symbol;Acc:HGNC:26391]
28. TNNT2 ENSGALG00000000302 568 1.475 0.747 - 0.728 - - - - - - - troponin T2, cardiac type [Source:NCBI gene;Acc:396433]
29. MYL4 ENSGALG00000000585 16982 1.474 0.733 - 0.741 - - - - - - - myosin, light chain 4, alkali; atrial, embryonic [Source:NCBI gene;Acc:396472]
30. XIRP1 ENSGALG00000006025 729 1.406 - - 0.700 0.706 - - - - - - xin actin binding repeat containing 1 [Source:NCBI gene;Acc:374266]
31. TLCD2 ENSGALG00000021592 1166 0.999 - - - - - - - 0.999 - - TLC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:33522]
32. CNTRL ENSGALG00000001513 1773 0.999 - - - - - - - 0.999 - - centriolin [Source:NCBI gene;Acc:417121]
33. QSOX2 ENSGALG00000001758 638 0.999 - - - - - - - 0.999 - - quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
34. ZNF318 ENSGALG00000034040 1758 0.999 - - - - - - - 0.999 - - zinc finger protein 318 [Source:HGNC Symbol;Acc:HGNC:13578]
35. LAMA5 486 0.999 - - - - - - - 0.999 - - laminin subunit alpha 5, transcript variant X3
36. RNF19B ENSGALG00000039716 662 0.999 - - - - - - - 0.999 - - ring finger protein 19B [Source:HGNC Symbol;Acc:HGNC:26886]
37. CENPJ ENSGALG00000017148 1415 0.999 - - - - - - - 0.999 - - centromere protein J [Source:HGNC Symbol;Acc:HGNC:17272]
38. SETD9 ENSGALG00000014719 5081 0.998 - - - - - - - 0.998 - - SET domain containing 9, transcript variant X2
39. RPAIN ENSGALG00000001666 2676 0.998 - - - - - - - 0.998 - - RPA interacting protein [Source:HGNC Symbol;Acc:HGNC:28641]
40. TUBD1 ENSGALG00000005173 1364 0.998 - - - - - - - 0.998 - - tubulin delta 1 [Source:HGNC Symbol;Acc:HGNC:16811]
41. REPS2 ENSGALG00000016545 3347 0.998 - - - - - - - 0.998 - - RALBP1 associated Eps domain containing 2 [Source:NCBI gene;Acc:418617]
42. BYSL ENSGALG00000003467 7555 0.998 - - - - - - - 0.998 - - bystin like [Source:HGNC Symbol;Acc:HGNC:1157]
43. NCAPG2 ENSGALG00000006525 2319 0.998 - - - - - - - 0.998 - - non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
44. VPRBP VPRBP 4037 0.998 - - - - - - - 0.998 - -
45. GTF2H3 ENSGALG00000023682 9914 0.997 - - - - - - - 0.997 - - general transcription factor IIH subunit 3 [Source:NCBI gene;Acc:771837]
46. SGCB ENSGALG00000013968 3214 0.997 - - - - - - - 0.997 - - sarcoglycan beta [Source:NCBI gene;Acc:422760]
47. NQO2 ENSGALG00000025747 2287 0.996 - - - - - - - 0.996 - - N-ribosyldihydronicotinamide:quinone reductase 2 [Source:HGNC Symbol;Acc:HGNC:7856]
48. AMACR ENSGALG00000003326 2657 0.996 - - - - - - - 0.996 - - alpha-methylacyl-CoA racemase [Source:NCBI gene;Acc:427429]
49. AKAP2 ENSGALG00000015656 4310 0.996 - - - - - - - 0.996 - - A kinase (PRKA) anchor protein 2 [Source:NCBI gene;Acc:100533110]
50. FRAS1 ENSGALG00000010316 5008 0.996 - - - - - - - 0.996 - - Fraser extracellular matrix complex subunit 1, transcript variant X2
51. ANKRD46 ENSGALG00000041445 3791 0.996 - - - - - - - 0.996 - - ankyrin repeat domain 46, transcript variant X1
52. EVX1 ENSGALG00000037310 1974 0.995 - - - - - - - 0.995 - - even-skipped homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3506]
53. EDNRA ENSGALG00000010013 2472 0.995 - - - - - - - 0.995 - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
54. STX8 ENSGALG00000001238 7403 0.995 - - - - - - - 0.995 - - syntaxin 8 [Source:NCBI gene;Acc:417321]
55. PTTG1IP ENSGALG00000005675, ENSGALG00000009044 10949 0.994 - - - - - - - 0.994 - - pituitary tumor-transforming 1 interacting protein, transcript variant X1
56. ERBB2IP ERBB2IP 5800 0.993 - - - - - - - 0.993 - -
57. WDHD1 ENSGALG00000012199 3570 0.993 - - - - - - - 0.993 - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
58. TAPA1 TAPA1 8669 0.993 - - - - - - - 0.993 - -
59. GTF2A1 ENSGALG00000010576 4570 0.993 - - - - - - - 0.993 - - general transcription factor IIA subunit 1 [Source:NCBI gene;Acc:423389]
60. BMS1 ENSGALG00000002624 8339 0.992 - - - - - - - 0.992 - - BMS1, ribosome biogenesis factor [Source:NCBI gene;Acc:423633]
61. GPR27 ENSGALG00000027091 8111 0.991 - - - - - - - 0.991 - - G protein-coupled receptor 27
62. MON2 ENSGALG00000009795 3868 0.991 - - - - - - - 0.991 - - MON2 homolog, regulator of endosome-to-Golgi trafficking [Source:NCBI gene;Acc:417818]
63. NAP1L1 ENSGALG00000010238 14506 0.991 - - - - - - - 0.991 - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
64. SUPV3L1 ENSGALG00000004197 4141 0.989 - - - - - - - 0.989 - - Suv3 like RNA helicase [Source:NCBI gene;Acc:423697]
65. GNG2 ENSGALG00000027629 9404 0.986 - - - - - - - 0.986 - - G protein subunit gamma 2 [Source:NCBI gene;Acc:423581]
66. ACSF2 ENSGALG00000019768 2727 0.986 - - - - - - - 0.986 - - acyl-CoA synthetase family member 2 [Source:HGNC Symbol;Acc:HGNC:26101]
67. MRPS35 ENSGALG00000036730 6327 0.984 - - - - - - - 0.984 - - mitochondrial ribosomal protein S35 [Source:NCBI gene;Acc:419048]
68. SOS1 ENSGALG00000039450 3941 0.984 - - - - - - - 0.984 - - SOS Ras/Rac guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:11187]
69. AMD1 ENSGALG00000039575 8900 0.983 - - - - - - - 0.983 - - adenosylmethionine decarboxylase 1 [Source:NCBI gene;Acc:421755]
70. MRE11A MRE11A 5754 0.979 - - - - - - - 0.979 - -
71. AP1B1 ENSGALG00000042213 4828 0.975 - - - - - - - 0.975 - - adaptor related protein complex 1 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:554]
72. MRPS11 ENSGALG00000006777 16009 0.975 - - - - - - - 0.975 - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
73. IST1 ENSGALG00000000811 10527 0.964 - - - - - - - 0.964 - - IST1, ESCRT-III associated factor [Source:HGNC Symbol;Acc:HGNC:28977]
74. CTNNA1 ENSGALG00000002447 22379 0.963 - - - - - - - 0.963 - - catenin alpha 1 [Source:HGNC Symbol;Acc:HGNC:2509]
75. RAD23B ENSGALG00000015540 10828 0.96 - - - - - - - 0.960 - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
76. COPS2 ENSGALG00000000404 8980 0.956 - - - - - - - 0.956 - - COP9 signalosome subunit 2 [Source:NCBI gene;Acc:430917]
77. ACE ENSGALG00000000498 1398 0.948 - - - - - - - 0.948 - - angiotensin I converting enzyme [Source:NCBI gene;Acc:419953]
78. C9orf78 ENSGALG00000004152 7140 0.948 - - - - - - - 0.948 - - chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:HGNC:24932]
79. MPHOSPH8 ENSGALG00000017145 6280 0.945 - - - - - - - 0.945 - - M-phase phosphoprotein 8 [Source:NCBI gene;Acc:418957]
80. HNRNPH1 HNRNPH1 8819 0.932 - - - - - - - 0.932 - -
81. PSPC1 ENSGALG00000017142 13036 0.931 - - - - - - - 0.931 - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
82. ANKRD10 ENSGALG00000030125 3611 0.929 - - - - - - - 0.929 - - ankyrin repeat domain 10 [Source:NCBI gene;Acc:418760]
83. SNX9 ENSGALG00000013710 5295 0.92 - - - - - - - 0.920 - - sorting nexin 9 [Source:HGNC Symbol;Acc:HGNC:14973]
84. MAB21L1 ENSGALG00000045052 1677 0.915 - - - - - - - 0.915 - - mab-21 like 1 [Source:NCBI gene;Acc:395208]
85. MOXD1 ENSGALG00000002911 8523 0.913 - - - - - - - 0.913 - - monooxygenase DBH like 1 [Source:NCBI gene;Acc:395333]
86. NHP2L1 NHP2L1 12124 0.91 - - - - - - - 0.910 - -
87. EXOSC3 ENSGALG00000002426 7255 0.909 - - - - - - - 0.909 - - exosome component 3 [Source:NCBI gene;Acc:423626]
88. Sep-05 Sep-05 5887 0.908 - - - - - - - 0.908 - -
89. MND1 ENSGALG00000009212 11765 0.906 - - - - - - - 0.906 - - meiotic nuclear divisions 1 [Source:NCBI gene;Acc:422399]
90. MBNL3 ENSGALG00000032045 10980 0.903 - - - - - - - 0.903 - - muscleblind like splicing regulator 3 [Source:NCBI gene;Acc:422233]
91. ENSGALG00000014852 ENSGALG00000014852 15288 0.899 - - - - - - - 0.899 - -
92. POLE3 ENSGALG00000008873 9161 0.894 - - - - - - - 0.894 - - DNA polymerase epsilon 3, accessory subunit [Source:NCBI gene;Acc:417275]
93. GPI ENSGALG00000004956 40030 0.891 - - - - - - - 0.891 - - glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
94. PSMC3 ENSGALG00000008108 22922 0.889 - - - - - - - 0.889 - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
95. DDX18 ENSGALG00000012147 12463 0.886 - - - - - - - 0.886 - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
96. ACTR2 ENSGALG00000008779 17812 0.876 - - - - - - - 0.876 - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
97. DGCR6 ENSGALG00000027369 7882 0.873 - - - - - - - 0.873 - - DiGeorge syndrome critical region gene 6 [Source:NCBI gene;Acc:395907]
98. TSNAX ENSGALG00000037177 3246 0.866 - - - - - - - 0.866 - - translin associated factor X [Source:NCBI gene;Acc:421526]
99. C1QTNF3 ENSGALG00000027887 8646 0.864 - - 0.864 - - - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
100. ENSGALG00000002903 ENSGALG00000002903 18304 0.859 - - - - - - - 0.859 - -

There are 152 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA