Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s62.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15324.10 114866.47
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5099.07 38221.64 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2594.80 19450.12 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2247.08 16843.67 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1561.47 11704.47 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. tmsb4x ENSDARG00000077777 1424.35 10676.65 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1422.38 10661.88 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. actc1b ENSDARG00000099197 1255.08 9407.84 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-atp6 ENSDARG00000063911 1201.94 9009.51 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. myhz2 ENSDARG00000012944 1159.30 8689.89 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
11. mylz3 ENSDARG00000017441 1049.73 7868.57 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1043.83 7824.35 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. mt-co3 ENSDARG00000063912 986.09 7391.54 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd2 ENSDARG00000063899 982.15 7362.01 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 918.51 6884.97 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 897.52 6727.64 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. atp2a1 ENSDARG00000020574 889.65 6668.64 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. actb2 ENSDARG00000037870 862.09 6462.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. mt-nd4 ENSDARG00000063917 854.22 6403.07 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. si:dkey-151g10.6 si:dkey-151g10.6 780.08 5847.33
21. actb1 ENSDARG00000037746, ENSDARG00000113649 727.59 5453.87 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
22. acta1b ENSDARG00000055618 724.97 5434.23 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
23. tnni2a.4 ENSDARG00000029069 691.51 5183.42 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. eef1a1l1 ENSDARG00000020850 669.86 5021.14 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. mt-cyb ENSDARG00000063924 633.12 4745.74 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. zgc:92533 zgc:92533 614.75 4608.05
27. mt-nd1 ENSDARG00000063895 530.77 3978.55 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. si:ch211-226o13.2 509.78 3821.21 si:ch211-226o13.2
29. hbae3 ENSDARG00000079305 501.25 3757.27 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
30. col1a1a ENSDARG00000012405, ENSDARG00000116113 497.97 3732.69 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
31. myl1 ENSDARG00000014196 464.51 3481.88 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
32. tnnt3a ENSDARG00000030270 459.26 3442.52 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
33. zgc:66286 zgc:66286 450.73 3378.58
34. ppiaa ENSDARG00000009212 450.07 3373.64 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. rpl23 ENSDARG00000053457 436.29 3270.34 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. myl10 ENSDARG00000062592 434.98 3260.53 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 429.08 3216.30 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. acta1a ENSDARG00000036371 420.55 3152.36 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
39. hmga1a ENSDARG00000028335 391.02 2931.01 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
40. zgc:112425 zgc:112425 385.78 2891.73
41. mt-co1 ENSDARG00000063905 358.22 2685.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
42. col1a1b ENSDARG00000035809 342.47 2567.09 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
43. hspa8 ENSDARG00000068992, ENSDARG00000114726 336.57 2522.86 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
44. aldoab ENSDARG00000034470 332.63 2493.33 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
45. ptmab ENSDARG00000101766 331.98 2488.46 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
46. hbbe3 ENSDARG00000038147, ENSDARG00000109344 328.70 2463.87 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
47. hbbe1.1 ENSDARG00000113599 325.42 2439.28 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
48. tnnt3b ENSDARG00000068457 320.82 2404.80 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
49. myhz1.3 ENSDARG00000067997 316.23 2370.40 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
50. tpm3 ENSDARG00000005162 315.58 2365.53 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
51. rpl8 ENSDARG00000014867 312.95 2345.81 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. cyt1l ENSDARG00000036832 312.29 2340.86 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
53. ttna ttna 305.73 2291.69
54. rplp1 ENSDARG00000021864 298.52 2237.65 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. pfn1 ENSDARG00000088091 290.64 2178.58 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
56. rpl9 ENSDARG00000037350, ENSDARG00000112384 288.68 2163.89 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
57. btf3 ENSDARG00000035400, ENSDARG00000116462 287.36 2153.99 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
58. smyhc1 ENSDARG00000099959, ENSDARG00000115916 286.71 2149.12 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
59. pvalb1 ENSDARG00000037789 285.40 2139.30 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
60. cfl1l ENSDARG00000012972 284.08 2129.41 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
61. ATP5B 275.55 2065.47 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
62. rps23 ENSDARG00000021838 274.24 2055.65 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
63. rps2 ENSDARG00000077291 273.59 2050.78 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. rpl36a ENSDARG00000058105, ENSDARG00000112656 272.27 2040.88 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
65. rpl26 ENSDARG00000102317 269.65 2021.24 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 268.99 2016.30 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. icn ENSDARG00000009978 267.03 2001.60 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
68. mylpfb ENSDARG00000002589 264.40 1981.89 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
69. rps26l ENSDARG00000030408 261.12 1957.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
70. gapdh ENSDARG00000043457 252.59 1893.37 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
71. rps20 ENSDARG00000036044 248.00 1858.96 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rpl18a ENSDARG00000025073 242.09 1814.66 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
73. rpl11 ENSDARG00000043509 236.19 1770.43 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. rps27a ENSDARG00000032725, ENSDARG00000114059 236.19 1770.43 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
75. gch2 ENSDARG00000099101 234.88 1760.61 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 231.60 1736.03 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. pvalb4 ENSDARG00000024433 230.28 1726.13 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
78. eif5a ENSDARG00000017235 225.04 1686.86 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
79. rpl19 ENSDARG00000013307 225.04 1686.86 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
80. rpl18 ENSDARG00000029533 221.76 1662.27 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
81. rps5 ENSDARG00000043453 219.79 1647.50 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
82. rps27.1 ENSDARG00000023298 211.26 1583.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. rpl27 ENSDARG00000015128 209.95 1573.74 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
84. rplp2 ENSDARG00000101406 207.98 1558.98 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. ttnb ttnb 205.35 1539.26
86. fabp3 ENSDARG00000023290 204.70 1534.39 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
87. fkbp1aa ENSDARG00000022684 203.39 1524.57 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
88. rpl36 ENSDARG00000100588 202.73 1519.62 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
89. eef2b ENSDARG00000100371, ENSDARG00000109247 202.07 1514.68 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
90. rps9 ENSDARG00000011405, ENSDARG00000113248 196.82 1475.32 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 194.20 1455.69 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. rpl7 ENSDARG00000007320 193.54 1450.74 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
93. rps6 ENSDARG00000019778 185.67 1391.75 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. rpl5b ENSDARG00000015862, ENSDARG00000109661 183.70 1376.98 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
95. rps24 ENSDARG00000039347 181.73 1362.21 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
96. rps15a ENSDARG00000010160 181.08 1357.34 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
97. rpsa ENSDARG00000019181 178.45 1337.63 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
98. tpm2 ENSDARG00000104682 175.83 1317.99 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
99. faua ENSDARG00000099022 175.17 1313.04 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
100. hmgn2 ENSDARG00000099572 173.86 1303.22 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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