Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s5.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15666.64 117433.40
2. ptmab ENSDARG00000101766 1613.07 12091.19 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. zgc:112425 zgc:112425 1501.93 11258.11
4. tmsb4x ENSDARG00000077777 1405.75 10537.17 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. si:dkey-151g10.6 si:dkey-151g10.6 1379.75 10342.28
6. mt-co2 ENSDARG00000063908 1286.81 9645.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. krt4 ENSDARG00000017624, ENSDARG00000115790 1269.92 9519.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
8. ppiaa ENSDARG00000009212 1011.90 7584.96 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. hmga1a ENSDARG00000028335 1009.30 7565.47 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. hmgn2 ENSDARG00000099572 959.91 7195.26 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
11. eef1a1l1 ENSDARG00000020850 804.58 6030.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. AL954137.2 ENSDARG00000114408 712.95 5344.10
13. actb2 ENSDARG00000037870 655.11 4910.55 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. rpl10a ENSDARG00000042905, ENSDARG00000115649 583.62 4374.68 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
15. rpl23 ENSDARG00000053457 561.52 4209.02 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
16. h3f3a 553.72 4150.55 H3 histone, family 3A, transcript variant X1
17. mt-co3 ENSDARG00000063912 529.67 3970.28 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-atp6 ENSDARG00000063911 503.03 3770.59 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. hnrnpab hnrnpab 471.18 3531.85
20. si:dkeyp-86f7.3 si:dkeyp-86f7.3 465.98 3492.88
21. cirbp cirbp 465.33 3488.00
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 454.28 3405.17 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. rpl36a ENSDARG00000058105, ENSDARG00000112656 452.98 3395.43 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
24. rps20 ENSDARG00000036044 429.59 3220.10 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
25. mt-nd4 ENSDARG00000063917 427.64 3205.49 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. hsp90ab1 ENSDARG00000029150 423.74 3176.25 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
27. rpl11 ENSDARG00000043509 415.29 3112.91 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 405.54 3039.83 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 389.94 2922.90 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. fkbp1aa ENSDARG00000022684 384.09 2879.05 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
31. rps15 ENSDARG00000070849, ENSDARG00000110979 376.30 2820.66 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
32. mt-nd2 ENSDARG00000063899 373.70 2801.17 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
33. rps14 ENSDARG00000036629 363.30 2723.21 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
34. cfl1 ENSDARG00000021124 360.05 2698.85 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 360.05 2698.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. id1 ENSDARG00000040764 358.75 2689.10 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
37. rps23 ENSDARG00000021838 358.75 2689.10 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. ptmaa ENSDARG00000021113, ENSDARG00000110479 357.45 2679.36 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
39. rpl36 ENSDARG00000100588 349.65 2620.89 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. mt-cyb ENSDARG00000063924 344.45 2581.92 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 343.80 2577.04 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. h3f3d ENSDARG00000045248 343.80 2577.04 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
43. rps27.1 ENSDARG00000023298 338.60 2538.06 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
44. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 337.30 2528.32 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
45. khdrbs1a ENSDARG00000052856 336.00 2518.58 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
46. rpl27 ENSDARG00000015128 329.50 2469.85 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
47. rpl8 ENSDARG00000014867 327.55 2455.24 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. gch2 ENSDARG00000099101 326.90 2450.36 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
49. rpl21 ENSDARG00000010516, ENSDARG00000110263 310.01 2323.76 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
50. rps5 ENSDARG00000043453 308.71 2314.02 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
51. h2afvb ENSDARG00000116491 306.76 2299.40 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
52. rplp1 ENSDARG00000021864 305.46 2289.66 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. pnrc2 ENSDARG00000053291, ENSDARG00000112537 302.86 2270.17 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
54. rpl7 ENSDARG00000007320 297.66 2231.19 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
55. pcna ENSDARG00000054155 295.06 2211.70 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
56. fabp3 ENSDARG00000023290 293.76 2201.96 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
57. si:ch1073-429i10.3 292.46 2192.21 si:ch1073-429i10.3, transcript variant X2
58. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 288.56 2162.98 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
59. rps27a ENSDARG00000032725, ENSDARG00000114059 284.01 2128.87 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. rpl19 ENSDARG00000013307 280.11 2099.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. rps15a ENSDARG00000010160 280.11 2099.64 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
62. rpl18a ENSDARG00000025073 278.81 2089.89 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 278.81 2089.89 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. eef1g ENSDARG00000056119 272.31 2041.17 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
65. rpl26 ENSDARG00000102317 267.11 2002.19 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
66. rpl18 ENSDARG00000029533 263.21 1972.96 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
67. rps19 ENSDARG00000030602 261.91 1963.21 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
68. hnrnpa0a ENSDARG00000089302 258.01 1933.98 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
69. rpl35 ENSDARG00000018334 257.36 1929.11 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
70. rpl28 ENSDARG00000005791 250.21 1875.51 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
71. faua ENSDARG00000099022 249.56 1870.64 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
72. mt-nd1 ENSDARG00000063895 241.12 1807.38 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
73. marcksb ENSDARG00000008803 240.47 1802.51 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
74. stmn1b ENSDARG00000033655 240.47 1802.51 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
75. rps12 ENSDARG00000036875, ENSDARG00000115157 239.82 1797.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
76. TUBA1A ENSDARG00000001889 238.52 1787.89 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
77. rplp2 ENSDARG00000101406 238.52 1787.89 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
78. marcksl1b ENSDARG00000035715 237.22 1778.14 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
79. rps2 ENSDARG00000077291 237.22 1778.14 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. rpl24 ENSDARG00000099104 234.62 1758.66 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
81. mt-co1 ENSDARG00000063905 233.32 1748.91 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 226.82 1700.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rps24 ENSDARG00000039347 226.17 1695.32 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
84. icn ENSDARG00000009978 222.27 1666.08 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
85. rps26l ENSDARG00000030408 221.62 1661.21 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
86. ywhabl ENSDARG00000040287 213.17 1597.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
87. eif5a ENSDARG00000017235 212.52 1593.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
88. rpl22 ENSDARG00000070437 209.92 1573.51 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
89. RPL29 ENSDARG00000077717 209.27 1568.64 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. rpl38 ENSDARG00000006413 207.97 1558.89 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
91. rpl30 ENSDARG00000035871, ENSDARG00000109253 207.32 1554.02 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
92. rpl15 ENSDARG00000009285 206.67 1549.15 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
93. rps6 ENSDARG00000019778 204.07 1529.66 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. marcksl1a ENSDARG00000039034 203.42 1524.79 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
95. rpl35a ENSDARG00000088030 202.12 1515.04 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
96. zgc:123194 zgc:123194 196.92 1476.07
97. rps7 ENSDARG00000042566 195.62 1466.32 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
98. nucks1a ENSDARG00000078473 193.67 1451.70 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
99. rps4x ENSDARG00000014690 190.42 1427.34 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
100. tubb4b ENSDARG00000002344 190.42 1427.34 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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