Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s31.

Sample reads: 133,388. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18903.28 141717.01
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3805.78 28531.75 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3742.97 28060.87 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2894.52 21700.08 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2664.58 19976.23 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2200.43 16496.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1921.52 14405.55 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mt-co2 ENSDARG00000063908 1858.71 13934.66 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. actc1b ENSDARG00000099197 1692.64 12689.64 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1623.44 12170.85 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. atp2a1 ENSDARG00000020574 1499.96 11245.13 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1387.11 10399.10 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. acta1b ENSDARG00000055618 1383.92 10375.18 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. tmsb4x ENSDARG00000077777 1186.98 8898.73 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-atp6 ENSDARG00000063911 1066.68 7996.85 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-co3 ENSDARG00000063912 1048.59 7861.23 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. tnni2a.4 ENSDARG00000029069 969.81 7270.62 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
18. mt-nd4 ENSDARG00000063917 892.10 6688.03 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. pvalb1 ENSDARG00000037789 843.13 6320.91 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
20. actb2 ENSDARG00000037870 805.87 6041.57 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-nd2 ENSDARG00000063899 754.77 5658.48 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. tnnt3a ENSDARG00000030270 727.09 5450.96 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. si:dkey-151g10.6 si:dkey-151g10.6 650.44 4876.32
24. mt-cyb ENSDARG00000063924 630.22 4724.73 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 624.89 4684.77 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
26. eef1a1l1 ENSDARG00000020850 605.73 4541.13 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. si:ch211-226o13.2 597.21 4477.26 si:ch211-226o13.2
28. tnnt3b ENSDARG00000068457 576.99 4325.67 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. apoa2 ENSDARG00000015866 517.37 3878.70 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
30. aldoab ENSDARG00000034470 516.31 3870.75 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
31. mt-nd1 ENSDARG00000063895 514.18 3854.78 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
32. acta1a ENSDARG00000036371 503.53 3774.94 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
33. myl1 ENSDARG00000014196 500.34 3751.03 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. apoc1l apoc1l 468.40 3511.57
35. mylpfb ENSDARG00000002589 451.37 3383.90 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
36. myhz1.2 ENSDARG00000067995 448.18 3359.98 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
37. zgc:92533 zgc:92533 430.08 3224.29
38. ttna ttna 419.43 3144.45
39. mt-co1 ENSDARG00000063905 406.66 3048.71 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. rpl10a ENSDARG00000042905, ENSDARG00000115649 397.08 2976.89 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
41. ttnb ttnb 358.75 2689.53
42. col1a1b ENSDARG00000035809 354.50 2657.67 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
43. actb1 ENSDARG00000037746, ENSDARG00000113649 349.17 2617.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
44. hbae3 ENSDARG00000079305 341.72 2561.86 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
45. myhz1.3 ENSDARG00000067997 341.72 2561.86 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
46. apobb apobb 325.75 2442.13
47. nme2b.2 ENSDARG00000099420 322.56 2418.22 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
48. gapdh ENSDARG00000043457 319.37 2394.30 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. hbbe3 ENSDARG00000038147, ENSDARG00000109344 303.40 2274.58 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
50. apoa1b ENSDARG00000101324 302.33 2266.55 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
51. ppiaa ENSDARG00000009212 300.20 2250.59 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
52. rpl23 ENSDARG00000053457 289.56 2170.82 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. rpl36a ENSDARG00000058105, ENSDARG00000112656 277.85 2083.03 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
54. btf3 ENSDARG00000035400, ENSDARG00000116462 270.40 2027.18 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. rps20 ENSDARG00000036044 268.27 2011.21 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. rps23 ENSDARG00000021838 259.75 1947.33 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
57. zgc:112425 zgc:112425 257.62 1931.37
58. col1a1a ENSDARG00000012405, ENSDARG00000116113 255.49 1915.40 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
59. rps27a ENSDARG00000032725, ENSDARG00000114059 254.43 1907.45 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 250.17 1875.51 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. rpl36 ENSDARG00000100588 248.04 1859.54 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. cyt1l ENSDARG00000036832 246.98 1851.60 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
63. hmga1a ENSDARG00000028335 243.78 1827.61 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
64. ATP5B 241.65 1811.64 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. zgc:66286 zgc:66286 240.59 1803.69
66. ptmab ENSDARG00000101766 239.52 1795.67 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
67. si:dkeyp-113d7.4 si:dkeyp-113d7.4 238.46 1787.72
68. myl10 ENSDARG00000062592 234.20 1755.79 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
69. zgc:161979_1 zgc:161979_1 232.07 1739.82
70. tpm3 ENSDARG00000005162 231.01 1731.87 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
71. pkmb ENSDARG00000099860 229.94 1723.85 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
72. rpl11 ENSDARG00000043509 229.94 1723.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
73. rpl8 ENSDARG00000014867 228.88 1715.90 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
74. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 223.56 1676.02 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
75. rps15 ENSDARG00000070849, ENSDARG00000110979 219.30 1644.08 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. col2a1a ENSDARG00000069093, ENSDARG00000111202 217.17 1628.11 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
77. rps26l ENSDARG00000030408 217.17 1628.11 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. rplp2 ENSDARG00000101406 213.98 1604.20 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
79. eef2b ENSDARG00000100371, ENSDARG00000109247 209.72 1572.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
80. eif5a ENSDARG00000017235 209.72 1572.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. hspa8 ENSDARG00000068992, ENSDARG00000114726 209.72 1572.26 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
82. rps15a ENSDARG00000010160 205.46 1540.32 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
83. apoeb ENSDARG00000040295 204.39 1532.30 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
84. rplp1 ENSDARG00000021864 204.39 1532.30 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
85. hbbe1.1 ENSDARG00000113599 203.33 1524.36 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
86. mt-nd3 ENSDARG00000063914 201.20 1508.39 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
87. pfn1 ENSDARG00000088091 196.94 1476.45 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
88. faua ENSDARG00000099022 189.49 1420.60 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
89. rpl18a ENSDARG00000025073 188.43 1412.65 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
90. rps5 ENSDARG00000043453 187.36 1404.63 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
91. rpl26 ENSDARG00000102317 184.17 1380.71 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
92. rpl9 ENSDARG00000037350, ENSDARG00000112384 184.17 1380.71 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
93. apoa1a ENSDARG00000012076, ENSDARG00000110395 177.78 1332.81 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
94. rpl19 ENSDARG00000013307 176.72 1324.86 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
95. rps12 ENSDARG00000036875, ENSDARG00000115157 171.39 1284.90 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
96. rps2 ENSDARG00000077291 171.39 1284.90 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
97. zgc:153129 zgc:153129 170.33 1276.96
98. hbae1_1 169.26 1268.93 hemoglobin, alpha embryonic 1
99. cfl1l ENSDARG00000012972 168.20 1260.99 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
100. col11a1a ENSDARG00000026165, ENSDARG00000115341 168.20 1260.99 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA