Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s68.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9773.07 73259.66
2. hmga1a ENSDARG00000028335 2198.94 16483.42 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
3. rpl10a ENSDARG00000042905, ENSDARG00000115649 1954.61 14651.90 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
4. actb2 ENSDARG00000037870 1710.29 12820.46 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. rps23 ENSDARG00000021838 1710.29 12820.46 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
6. si:ch1073-429i10.3 1710.29 12820.46 si:ch1073-429i10.3, transcript variant X2
7. si:dkey-151g10.6 si:dkey-151g10.6 1710.29 12820.46
8. tmsb4x ENSDARG00000077777 1710.29 12820.46 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. krt4 ENSDARG00000017624, ENSDARG00000115790 1465.96 10988.95 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
10. mt-co2 ENSDARG00000063908 1465.96 10988.95 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mt-co3 ENSDARG00000063912 1221.63 9157.43 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mt-nd2 ENSDARG00000063899 1221.63 9157.43 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. hdac1 ENSDARG00000015427 977.31 7325.99 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
14. hspa8 ENSDARG00000068992, ENSDARG00000114726 977.31 7325.99 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
15. mt-co1 ENSDARG00000063905 977.31 7325.99 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
16. rpl21 ENSDARG00000010516, ENSDARG00000110263 977.31 7325.99 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
17. eif4a3 ENSDARG00000102978 732.98 5494.47 eukaryotic translation initiation factor 4A3 [Source:ZFIN;Acc:ZDB-GENE-040426-915]
18. fkbp1aa ENSDARG00000022684 732.98 5494.47 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
19. hnrnpa0a ENSDARG00000089302 732.98 5494.47 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
20. kdm6bb ENSDARG00000056929 732.98 5494.47 lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
21. msna ENSDARG00000058128, ENSDARG00000114614 732.98 5494.47 moesin a [Source:ZFIN;Acc:ZDB-GENE-021211-2]
22. mt-atp6 ENSDARG00000063911 732.98 5494.47 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. mthfd1l ENSDARG00000042221, ENSDARG00000110473 732.98 5494.47 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
24. pcna ENSDARG00000054155 732.98 5494.47 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
25. rpl19 ENSDARG00000013307 732.98 5494.47 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
26. rpl23 ENSDARG00000053457 732.98 5494.47 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
27. rpl8 ENSDARG00000014867 732.98 5494.47 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. rps10 ENSDARG00000034897 732.98 5494.47 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
29. rps2 ENSDARG00000077291 732.98 5494.47 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
30. tuba8l4 ENSDARG00000006260 732.98 5494.47 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
31. ube2a ENSDARG00000098466 732.98 5494.47 ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
32. zgc:112425 zgc:112425 732.98 5494.47
33. AL954137.2 ENSDARG00000114408 488.65 3662.96
34. CABZ01027552.1 CABZ01027552.1 488.65 3662.96
35. CABZ01092303.1 CABZ01092303.1 488.65 3662.96
36. CDCA4 ENSDARG00000042319 488.65 3662.96 cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
37. CT955967.1 ENSDARG00000099956 488.65 3662.96
38. acta1b ENSDARG00000055618 488.65 3662.96 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
39. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 488.65 3662.96 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
40. atp5g3b 488.65 3662.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
41. bhmt ENSDARG00000013430 488.65 3662.96 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
42. cbx5 ENSDARG00000061187 488.65 3662.96 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
43. ccdc53 488.65 3662.96 coiled-coil domain containing 53
44. ccnd1 ENSDARG00000101637 488.65 3662.96 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
45. cdc42 ENSDARG00000044573 488.65 3662.96 cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
46. cdk5 ENSDARG00000056683 488.65 3662.96 cyclin-dependent kinase 5 [Source:ZFIN;Acc:ZDB-GENE-010131-2]
47. chd4b ENSDARG00000025789 488.65 3662.96 chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
48. col11a1b ENSDARG00000009014 488.65 3662.96 collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
49. dnaja2 ENSDARG00000104066 488.65 3662.96 DnaJ (Hsp40) homolog, subfamily A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2884]
50. eef1a1l1 ENSDARG00000020850 488.65 3662.96 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 488.65 3662.96 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. efnb3b ENSDARG00000042277 488.65 3662.96 ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
53. eif1axa ENSDARG00000029003, ENSDARG00000114914 488.65 3662.96 eukaryotic translation initiation factor 1A X-linked a [Source:ZFIN;Acc:ZDB-GENE-041010-185]
54. eif3c ENSDARG00000016443 488.65 3662.96 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
55. eif4bb ENSDARG00000010194, ENSDARG00000112432 488.65 3662.96 eukaryotic translation initiation factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-030131-8563]
56. elf2b ENSDARG00000079626, ENSDARG00000117064 488.65 3662.96 E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
57. id1 ENSDARG00000040764 488.65 3662.96 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
58. mab21l1 ENSDARG00000102047 488.65 3662.96 mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
59. marcksl1b ENSDARG00000035715 488.65 3662.96 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
60. nmt1a ENSDARG00000052966 488.65 3662.96 N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
61. nr2f6a ENSDARG00000003607 488.65 3662.96 nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
62. pdap1a ENSDARG00000092546, ENSDARG00000116115 488.65 3662.96 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
63. pnrc2 ENSDARG00000053291, ENSDARG00000112537 488.65 3662.96 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
64. ppiaa ENSDARG00000009212 488.65 3662.96 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
65. rbm4.3 ENSDARG00000022129 488.65 3662.96 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
66. rpl18 ENSDARG00000029533 488.65 3662.96 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
67. rpl18a ENSDARG00000025073 488.65 3662.96 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
68. rpl36 ENSDARG00000100588 488.65 3662.96 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
69. rplp2l ENSDARG00000011201 488.65 3662.96 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
70. rps24 ENSDARG00000039347 488.65 3662.96 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
71. rps27a ENSDARG00000032725, ENSDARG00000114059 488.65 3662.96 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
72. rps29 ENSDARG00000041232 488.65 3662.96 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
73. seta ENSDARG00000031495 488.65 3662.96 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
74. si:ch73-86n18.1 ENSDARG00000056379, ENSDARG00000112771 488.65 3662.96 si:ch73-86n18.1 [Source:ZFIN;Acc:ZDB-GENE-141216-19]
75. thoc7 ENSDARG00000015394 488.65 3662.96 THO complex 7 [Source:ZFIN;Acc:ZDB-GENE-040801-17]
76. wls ENSDARG00000009534 488.65 3662.96 wntless Wnt ligand secretion mediator [Source:ZFIN;Acc:ZDB-GENE-040426-2161]
77. ywhaba ENSDARG00000013078 488.65 3662.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
78. AL935210.1 ENSDARG00000088330 244.33 1831.52 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
79. ANKRD50 ENSDARG00000045666 244.33 1831.52 ankyrin repeat domain 50 [Source:HGNC Symbol;Acc:HGNC:29223]
80. AP3B1 244.33 1831.52 adaptor related protein complex 3 beta 1 subunit
81. ARHGEF5 244.33 1831.52 Rho guanine nucleotide exchange factor (GEF) 5, transcript variant X2
82. ATP5B 244.33 1831.52 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
83. BAZ1A ENSDARG00000063233, ENSDARG00000099745 244.33 1831.52 bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
84. C6H2orf40 C6H2orf40 244.33 1831.52
85. CABZ01013938.1 CABZ01013938.1 244.33 1831.52
86. CABZ01055343.2 CABZ01055343.2 244.33 1831.52
87. CABZ01070258.1 ENSDARG00000105687 244.33 1831.52
88. CABZ01088509.1 CABZ01088509.1 244.33 1831.52
89. ESCO1 ENSDARG00000077057 244.33 1831.52 establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-130530-818]
90. HNRNPAB HNRNPAB 244.33 1831.52
91. IM:7163548 IM:7163548 244.33 1831.52
92. KDM6B KDM6B 244.33 1831.52
93. MAP4K4 ENSDARG00000098670 244.33 1831.52 mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
94. NDUFB2 ENSDARG00000045490 244.33 1831.52 NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
95. NID2 NID2 244.33 1831.52
96. RANBP3 RANBP3 244.33 1831.52
97. SERBP1 SERBP1 244.33 1831.52
98. SLC7A5 ENSDARG00000099265, ENSDARG00000115845 244.33 1831.52 solute carrier family 7 (amino acid transporter light chain, L system), member 5 [Source:ZFIN;Acc:ZDB-GENE-080818-4]
99. SNORA70 SNORA70 244.33 1831.52
100. TUBA1A ENSDARG00000001889 244.33 1831.52 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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