Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s59.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6709.62 50298.32
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5454.84 40891.92 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 3938.64 29525.81 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 2114.55 15851.61 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-atp6 ENSDARG00000063911 1556.86 11670.92 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-nd2 ENSDARG00000063899 1522.01 11409.67 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. si:dkey-151g10.6 si:dkey-151g10.6 1417.44 10625.77
8. apoc1l apoc1l 1382.59 10364.51
9. mt-co3 ENSDARG00000063912 1138.60 8535.46 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. efemp2a ENSDARG00000094324 1092.13 8187.10 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
11. ppiaa ENSDARG00000009212 888.81 6662.92 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. zgc:112425 zgc:112425 865.57 6488.70
13. rpl23 ENSDARG00000053457 801.67 6009.68 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
14. mt-nd4 ENSDARG00000063917 761.00 5704.80 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. actb2 ENSDARG00000037870 708.72 5312.88 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. hmga1a ENSDARG00000028335 702.91 5269.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. rpl18a ENSDARG00000025073 691.29 5182.22 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
18. rps23 ENSDARG00000021838 639.01 4790.31 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 633.20 4746.75 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. eef1a1l1 ENSDARG00000020850 609.97 4572.61 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. rps26l ENSDARG00000030408 598.35 4485.50 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
22. rpl36 ENSDARG00000100588 586.73 4398.39 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
23. rpl8 ENSDARG00000014867 575.11 4311.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. mt-nd1 ENSDARG00000063895 540.26 4050.03 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. id1 ENSDARG00000040764 476.35 3570.93 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. rpl19 ENSDARG00000013307 464.74 3483.90 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
27. rps14 ENSDARG00000036629 458.93 3440.34 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 453.12 3396.79 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. ptmab ENSDARG00000101766 453.12 3396.79 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
30. RPL29 ENSDARG00000077717 441.50 3309.68 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
31. krt8 ENSDARG00000058358, ENSDARG00000109279 424.07 3179.02 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
32. rps15 ENSDARG00000070849, ENSDARG00000110979 424.07 3179.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
33. pcna ENSDARG00000054155 418.26 3135.46 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
34. rpl9 ENSDARG00000037350, ENSDARG00000112384 418.26 3135.46 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 412.45 3091.91 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. si:dkeyp-86f7.3 si:dkeyp-86f7.3 412.45 3091.91
37. cfl1l ENSDARG00000012972 406.64 3048.36 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
38. eef2b ENSDARG00000100371, ENSDARG00000109247 406.64 3048.36 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
39. rpl21 ENSDARG00000010516, ENSDARG00000110263 406.64 3048.36 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 400.83 3004.80 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. rpl26 ENSDARG00000102317 400.83 3004.80 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. rpl11 ENSDARG00000043509 395.03 2961.32 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
43. rpl36a ENSDARG00000058105, ENSDARG00000112656 389.22 2917.77 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
44. rps27.1 ENSDARG00000023298 389.22 2917.77 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
45. rps5 ENSDARG00000043453 389.22 2917.77 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
46. rps15a ENSDARG00000010160 377.60 2830.66 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
47. col1a1a ENSDARG00000012405, ENSDARG00000116113 371.79 2787.10 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
48. faua ENSDARG00000099022 371.79 2787.10 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
49. cyt1l ENSDARG00000036832 360.17 2700.00 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
50. mt-cyb ENSDARG00000063924 360.17 2700.00 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
51. rps19 ENSDARG00000030602 360.17 2700.00 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
52. rps20 ENSDARG00000036044 348.55 2612.89 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
53. zgc:92533 zgc:92533 342.74 2569.33
54. hsp90ab1 ENSDARG00000029150 331.12 2482.22 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
55. rpl27 ENSDARG00000015128 331.12 2482.22 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
56. rplp1 ENSDARG00000021864 325.31 2438.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. rps29 ENSDARG00000041232 319.51 2395.19 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
58. rpl39 ENSDARG00000036316, ENSDARG00000117167 313.70 2351.64 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
59. acta1a ENSDARG00000036371 307.89 2308.08 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
60. rps2 ENSDARG00000077291 307.89 2308.08 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. RPL37A RPL37A 302.08 2264.53
62. btf3 ENSDARG00000035400, ENSDARG00000116462 302.08 2264.53 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
63. rpl24 ENSDARG00000099104 302.08 2264.53 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
64. rpl31 ENSDARG00000053365 302.08 2264.53 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
65. rpl28 ENSDARG00000005791 284.65 2133.86 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
66. si:ch1073-429i10.3 278.84 2090.31 si:ch1073-429i10.3, transcript variant X2
67. uba52 ENSDARG00000041435 278.84 2090.31 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
68. rpl18 ENSDARG00000029533 273.03 2046.76 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
69. rpl23a ENSDARG00000006316 273.03 2046.76 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
70. rps10 ENSDARG00000034897 267.22 2003.20 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
71. rpl35 ENSDARG00000018334 261.41 1959.65 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
72. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 261.41 1959.65 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
73. mt-co1 ENSDARG00000063905 255.60 1916.09 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. rps3 ENSDARG00000103007 255.60 1916.09 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
75. rpsa ENSDARG00000019181 255.60 1916.09 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
76. rpl38 ENSDARG00000006413 249.80 1872.61 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
77. rplp2l ENSDARG00000011201 249.80 1872.61 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
78. rps7 ENSDARG00000042566 243.99 1829.06 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
79. pfn1 ENSDARG00000088091 238.18 1785.50 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
80. rpl30 ENSDARG00000035871, ENSDARG00000109253 238.18 1785.50 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
81. rps24 ENSDARG00000039347 238.18 1785.50 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
82. eif5a ENSDARG00000017235 232.37 1741.95 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
83. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 232.37 1741.95 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
84. rpl15 ENSDARG00000009285 232.37 1741.95 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
85. rps4x ENSDARG00000014690 232.37 1741.95 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. rps6 ENSDARG00000019778 232.37 1741.95 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
87. fabp3 ENSDARG00000023290 226.56 1698.40 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
88. myl12.1 ENSDARG00000099766 226.56 1698.40 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
89. rpl6 ENSDARG00000058451 226.56 1698.40 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. rps12 ENSDARG00000036875, ENSDARG00000115157 226.56 1698.40 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
91. rps25 ENSDARG00000041811 226.56 1698.40 ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
92. hmgn2 ENSDARG00000099572 220.75 1654.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
93. rpl22 ENSDARG00000070437 220.75 1654.84 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
94. rps13 ENSDARG00000036298, ENSDARG00000112818 220.75 1654.84 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
95. apoeb ENSDARG00000040295 214.94 1611.29 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
96. myl10 ENSDARG00000062592 214.94 1611.29 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
97. rpl35a ENSDARG00000088030 214.94 1611.29 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
98. ran ENSDARG00000057026 209.13 1567.73 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
99. rpl7 ENSDARG00000007320 209.13 1567.73 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 209.13 1567.73 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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