Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s28.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15558.09 116625.87
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3310.23 24814.00 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2979.21 22332.62 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-co2 ENSDARG00000063908 1986.14 14888.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. BX511252.1 BX511252.1 1655.12 12407.04
6. mt-atp6 ENSDARG00000063911 1655.12 12407.04 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. tmsb4x ENSDARG00000077777 1655.12 12407.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-cyb ENSDARG00000063924 1324.09 9925.58 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
9. acta1b ENSDARG00000055618 993.07 7444.21 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
10. actb2 ENSDARG00000037870 993.07 7444.21 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ckmb ENSDARG00000040565 993.07 7444.21 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
12. cox6a1 ENSDARG00000022438 993.07 7444.21 cytochrome c oxidase subunit 6A1 [Source:ZFIN;Acc:ZDB-GENE-030131-7715]
13. hmga1a ENSDARG00000028335 993.07 7444.21 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
14. mt-nd1 ENSDARG00000063895 993.07 7444.21 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. rpl18a ENSDARG00000025073 993.07 7444.21 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
16. rpl9 ENSDARG00000037350, ENSDARG00000112384 993.07 7444.21 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 993.07 7444.21 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. COX5B_1 ENSDARG00000015978 662.05 4962.83 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
19. IL17RD ENSDARG00000098359 662.05 4962.83 interleukin 17 receptor D [Source:ZFIN;Acc:ZDB-GENE-020320-5]
20. RPL29 ENSDARG00000077717 662.05 4962.83 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
21. acta1a ENSDARG00000036371 662.05 4962.83 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
22. ahcy ENSDARG00000005191 662.05 4962.83 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
23. apoc1l apoc1l 662.05 4962.83
24. cdh5 ENSDARG00000075549 662.05 4962.83 cadherin 5 [Source:ZFIN;Acc:ZDB-GENE-040816-1]
25. elnb ENSDARG00000069017 662.05 4962.83 elastin b [Source:ZFIN;Acc:ZDB-GENE-061212-2]
26. gapdh ENSDARG00000043457 662.05 4962.83 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
27. hbae3 ENSDARG00000079305 662.05 4962.83 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
28. hnrnpa0a ENSDARG00000089302 662.05 4962.83 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
29. mt-nd4 ENSDARG00000063917 662.05 4962.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
30. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 662.05 4962.83 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
31. pvalb4 ENSDARG00000024433 662.05 4962.83 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 662.05 4962.83 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. rpl23a ENSDARG00000006316 662.05 4962.83 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
34. rpl26 ENSDARG00000102317 662.05 4962.83 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rpl32 ENSDARG00000054818, ENSDARG00000110237, ENSDARG00000115707 662.05 4962.83 ribosomal protein L32 [Source:ZFIN;Acc:ZDB-GENE-060331-105]
36. rpl35 ENSDARG00000018334 662.05 4962.83 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
37. rpl36a ENSDARG00000058105, ENSDARG00000112656 662.05 4962.83 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
38. rpl8 ENSDARG00000014867 662.05 4962.83 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
39. rps19 ENSDARG00000030602 662.05 4962.83 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
40. si:dkey-153m14.1 si:dkey-153m14.1 662.05 4962.83
41. timm17a ENSDARG00000029510, ENSDARG00000115486 662.05 4962.83 translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:ZFIN;Acc:ZDB-GENE-031030-6]
42. tma16 ENSDARG00000008068, ENSDARG00000115226 662.05 4962.83 translation machinery associated 16 homolog [Source:ZFIN;Acc:ZDB-GENE-050522-20]
43. tuba8l ENSDARG00000042708 662.05 4962.83 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
44. AC024175.17 AC024175.17 331.02 2481.38
45. AL935210.1 ENSDARG00000088330 331.02 2481.38 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
46. ATP5B 331.02 2481.38 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
47. B3GNT2 B3GNT2 331.02 2481.38
48. BAX BAX 331.02 2481.38
49. CABZ01076275.1 ENSDARG00000100753 331.02 2481.38 scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
50. CR936437.1 CR936437.1 331.02 2481.38
51. DENND4B ENSDARG00000102914 331.02 2481.38 DENN/MADD domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-130530-684]
52. E2F2 E2F2 331.02 2481.38
53. ENSDARG00000087348 ENSDARG00000087348 331.02 2481.38
54. GCA GCA 331.02 2481.38
55. GRAMD1C ENSDARG00000076238 331.02 2481.38 GRAM domain containing 1c [Source:ZFIN;Acc:ZDB-GENE-050506-88]
56. HOMEZ HOMEZ 331.02 2481.38
57. IM:7163548 IM:7163548 331.02 2481.38
58. INCENP 331.02 2481.38 inner centromere protein
59. KANSL1_1 KANSL1_1 331.02 2481.38
60. NDUFB1 ENSDARG00000087456 331.02 2481.38 NADH:ubiquinone oxidoreductase subunit B1 [Source:HGNC Symbol;Acc:HGNC:7695]
61. PRR5L PRR5L 331.02 2481.38
62. RPL37A RPL37A 331.02 2481.38
63. TEAD3 TEAD3 331.02 2481.38
64. WIPF2 WIPF2 331.02 2481.38
65. acsl1 acsl1 331.02 2481.38
66. actb1 ENSDARG00000037746, ENSDARG00000113649 331.02 2481.38 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
67. actc1b ENSDARG00000099197 331.02 2481.38 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
68. aldoab ENSDARG00000034470 331.02 2481.38 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
69. api5 ENSDARG00000033597 331.02 2481.38 apoptosis inhibitor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-395]
70. apmap ENSDARG00000017422 331.02 2481.38 adipocyte plasma membrane associated protein [Source:ZFIN;Acc:ZDB-GENE-020919-1]
71. apoa1a ENSDARG00000012076, ENSDARG00000110395 331.02 2481.38 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
72. apoa2 ENSDARG00000015866 331.02 2481.38 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
73. apoc2 ENSDARG00000092155 331.02 2481.38 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
74. arhgdia ENSDARG00000043795 331.02 2481.38 Rho GDP dissociation inhibitor (GDI) alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2816]
75. arrb2b ENSDARG00000011545 331.02 2481.38 arrestin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1332]
76. asb12a ENSDARG00000017086, ENSDARG00000110715 331.02 2481.38 ankyrin repeat and SOCS box-containing 12a [Source:ZFIN;Acc:ZDB-GENE-030131-1647]
77. atp1b1b ENSDARG00000076833 331.02 2481.38 ATPase Na+/K+ transporting subunit beta 1b [Source:ZFIN;Acc:ZDB-GENE-001127-4]
78. atp2a1 ENSDARG00000020574 331.02 2481.38 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
79. atp6v0ca ENSDARG00000057853 331.02 2481.38 ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
80. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 331.02 2481.38 alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
81. aurka ENSDARG00000012485 331.02 2481.38 aurora kinase A [Source:ZFIN;Acc:ZDB-GENE-040801-161]
82. btg1 ENSDARG00000027249 331.02 2481.38 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
83. calm1a ENSDARG00000021811 331.02 2481.38 calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
84. calrl calrl 331.02 2481.38
85. canx ENSDARG00000037488 331.02 2481.38 calnexin [Source:ZFIN;Acc:ZDB-GENE-040426-2797]
86. capza1a ENSDARG00000034240 331.02 2481.38 capping actin protein of muscle Z-line subunit alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5237]
87. capzb ENSDARG00000100252 331.02 2481.38 capping actin protein of muscle Z-line subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-7023]
88. ccnl1a ENSDARG00000055124, ENSDARG00000116311 331.02 2481.38 cyclin L1a [Source:ZFIN;Acc:ZDB-GENE-050419-206]
89. cd81 cd81 331.02 2481.38
90. cdh2 ENSDARG00000018693, ENSDARG00000117201 331.02 2481.38 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
91. cfl1 ENSDARG00000021124 331.02 2481.38 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
92. ckma ENSDARG00000035327, ENSDARG00000114671 331.02 2481.38 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
93. cnppd1 ENSDARG00000027078 331.02 2481.38 cyclin Pas1/PHO80 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6808]
94. col1a1b ENSDARG00000035809 331.02 2481.38 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
95. col4a5 ENSDARG00000052063 331.02 2481.38 collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
96. col9a1 col9a1 331.02 2481.38
97. commd5 ENSDARG00000029660 331.02 2481.38 COMM domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040801-71]
98. cox17 ENSDARG00000069920, ENSDARG00000114117 331.02 2481.38 cytochrome c oxidase copper chaperone COX17 [Source:ZFIN;Acc:ZDB-GENE-040912-91]
99. cpsf3 ENSDARG00000027649 331.02 2481.38 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
100. cyt1 ENSDARG00000092947 331.02 2481.38 type I cytokeratin, enveloping layer [Source:ZFIN;Acc:ZDB-GENE-991008-6]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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