Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s10.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 29139.27 218421.18
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2709.24 20307.83 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1516.78 11369.43 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-co2 ENSDARG00000063908 1115.05 8358.15 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd4 ENSDARG00000063917 991.59 7432.73 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. tmsb4x ENSDARG00000077777 969.06 7263.85 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. hbbe3 ENSDARG00000038147, ENSDARG00000109344 950.44 7124.28 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
8. actb2 ENSDARG00000037870 906.35 6793.79 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. mt-co3 ENSDARG00000063912 903.41 6771.75 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. apoc1l apoc1l 879.89 6595.45
11. eef1a1l1 ENSDARG00000020850 857.35 6426.50 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-atp6 ENSDARG00000063911 848.54 6360.46 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. tpma ENSDARG00000033683 755.45 5662.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
14. apoeb ENSDARG00000040295 753.49 5647.99 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
15. mt-nd1 ENSDARG00000063895 727.04 5449.72 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. si:dkey-150i13.2 ENSDARG00000071052 724.10 5427.68 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
17. apoa1b ENSDARG00000101324 665.31 4987.01 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
18. zgc:161979_1 zgc:161979_1 660.41 4950.28
19. zgc:161979 zgc:161979 633.95 4751.94
20. apoa2 ENSDARG00000015866 629.05 4715.21 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
21. si:dkey-151g10.6 si:dkey-151g10.6 626.11 4693.17
22. apobb apobb 620.23 4649.10
23. eef2b ENSDARG00000100371, ENSDARG00000109247 557.53 4179.11 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. ckmb ENSDARG00000040565 545.77 4090.96 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 523.23 3922.01 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. hbae3 ENSDARG00000079305 513.43 3848.55 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
27. ppiaa ENSDARG00000009212 489.92 3672.33 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. ckma ENSDARG00000035327, ENSDARG00000114671 433.09 3246.34 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
29. actc1b ENSDARG00000099197 411.53 3084.73 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
30. mt-cyb ENSDARG00000063924 385.07 2886.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 365.48 2739.55 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 364.50 2732.21 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. hmga1a ENSDARG00000028335 354.70 2658.75 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
34. btf3 ENSDARG00000035400, ENSDARG00000116462 351.76 2636.71 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. rpl26 ENSDARG00000102317 342.94 2570.60 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. apoa1a ENSDARG00000012076, ENSDARG00000110395 332.16 2489.79 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
37. zgc:66286 zgc:66286 332.16 2489.79
38. zgc:112425 zgc:112425 329.22 2467.76
39. rpl23 ENSDARG00000053457 328.24 2460.41 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. rpl21 ENSDARG00000010516, ENSDARG00000110263 319.43 2394.37 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
41. AL935210.1 ENSDARG00000088330 302.77 2269.49 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 298.85 2240.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. apoa4 apoa4 295.91 2218.07
44. atp2a1 ENSDARG00000020574 285.13 2137.27 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
45. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 284.15 2129.92 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
46. rpl18a ENSDARG00000025073 283.17 2122.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
47. rps14 ENSDARG00000036629 281.21 2107.88 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 277.29 2078.50 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. ctsla ENSDARG00000007836 276.31 2071.16 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
50. fabp2 ENSDARG00000006427, ENSDARG00000110230 268.47 2012.39 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
51. rplp1 ENSDARG00000021864 268.47 2012.39 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. rpl8 ENSDARG00000014867 265.53 1990.35 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. hbae1_1 262.60 1968.39 hemoglobin, alpha embryonic 1
54. rpl11 ENSDARG00000043509 249.86 1872.89 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. eif5a ENSDARG00000017235 247.90 1858.20 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
56. hsp90aa1.1 ENSDARG00000010478 246.92 1850.85 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
57. hbbe1.1 ENSDARG00000113599 243.00 1821.47 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
58. acta1a ENSDARG00000036371 234.18 1755.36 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
59. rps23 ENSDARG00000021838 233.20 1748.01 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. bhmt ENSDARG00000013430 226.34 1696.59 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
61. mt-co1 ENSDARG00000063905 225.36 1689.25 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
62. mylz3 ENSDARG00000017441 223.40 1674.55 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
63. rpl27 ENSDARG00000015128 216.54 1623.13 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
64. rps26l ENSDARG00000030408 216.54 1623.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
65. tnnc2 ENSDARG00000070835, ENSDARG00000111155 214.58 1608.44 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
66. AC024175.17 AC024175.17 209.68 1571.71
67. zgc:153129 zgc:153129 209.68 1571.71
68. rpl19 ENSDARG00000013307 207.72 1557.02 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. acta1b ENSDARG00000055618 203.81 1527.71 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
70. rpl36 ENSDARG00000100588 203.81 1527.71 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
71. RPL29 ENSDARG00000077717 199.89 1498.33 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
72. rpl18 ENSDARG00000029533 199.89 1498.33 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. myhz1.3 ENSDARG00000067997 197.93 1483.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
74. rpl7 ENSDARG00000007320 197.93 1483.64 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
75. rps5 ENSDARG00000043453 197.93 1483.64 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
76. fabp3 ENSDARG00000023290 194.01 1454.25 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
77. pabpc1a ENSDARG00000017219 191.07 1432.22 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
78. rps6 ENSDARG00000019778 191.07 1432.22 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
79. rps2 ENSDARG00000077291 190.09 1424.87 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. atp1b1a ENSDARG00000013144 189.11 1417.52 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
81. rpl9 ENSDARG00000037350, ENSDARG00000112384 189.11 1417.52 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
82. fth1a ENSDARG00000015551 188.13 1410.18 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
83. rps15 ENSDARG00000070849, ENSDARG00000110979 187.15 1402.83 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
84. rps15a ENSDARG00000010160 181.27 1358.76 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 177.35 1329.37 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. rps9 ENSDARG00000011405, ENSDARG00000113248 175.39 1314.68 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
87. tpm3 ENSDARG00000005162 175.39 1314.68 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
88. ATP5B 174.41 1307.34 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. fetub ENSDARG00000053973 174.41 1307.34 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
90. myl10 ENSDARG00000062592 174.41 1307.34 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
91. rpl14 ENSDARG00000103433 171.47 1285.30 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
92. rpl6 ENSDARG00000058451 171.47 1285.30 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
93. ttna ttna 171.47 1285.30
94. hsp90ab1 ENSDARG00000029150 169.51 1270.61 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
95. zgc:92533 zgc:92533 169.51 1270.61
96. rpl15 ENSDARG00000009285 168.53 1263.26 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. h1f0 ENSDARG00000038559 166.57 1248.57 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
98. rps19 ENSDARG00000030602 166.57 1248.57 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
99. rps4x ENSDARG00000014690 165.59 1241.22 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
100. rpl5b ENSDARG00000015862, ENSDARG00000109661 164.61 1233.88 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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