Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_2, section s46.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4200.84 43645.08 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3232.05 33579.73 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2938.94 30534.44 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2746.74 28537.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2626.56 27288.93 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2523.35 26216.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1211.91 12591.27 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 957.32 9946.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 950.44 9874.70 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Rnr2 ENSMUSG00000064339 893.10 9278.96 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. mt-Nd3 ENSMUSG00000064360 885.31 9198.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 804.57 8359.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Mdk ENSMUSG00000027239 667.42 6934.23 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Eef1a1 ENSMUSG00000037742 631.18 6557.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Hmga2 ENSMUSG00000056758 498.62 5180.47 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. mt-Co3 ENSMUSG00000064358 493.57 5128.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. mt-Nd5 ENSMUSG00000064367 479.35 4980.26 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Igf2 ENSMUSG00000048583 447.24 4646.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Rpsa ENSMUSG00000032518 418.34 4346.39 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 372.01 3865.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 349.54 3631.58 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Hbb-y ENSMUSG00000052187 343.11 3564.78 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Gm10800 ENSMUSG00000075014 304.12 3159.69 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
24. Tuba1b ENSMUSG00000023004 256.42 2664.10 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Tubb5 ENSMUSG00000001525 248.62 2583.06 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Npm1 ENSMUSG00000057113 245.41 2549.71 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Rps26 ENSMUSG00000025362 221.56 2301.92 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
28. Pkm ENSMUSG00000032294 214.22 2225.66 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Ubb ENSMUSG00000019505 212.84 2211.32 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Nedd4 ENSMUSG00000032216 199.08 2068.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Hsp90ab1 ENSMUSG00000023944 193.12 2006.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Eif4g2 ENSMUSG00000005610 184.40 1915.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Eif5a ENSMUSG00000078812 183.94 1911.06 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Tpt1 ENSMUSG00000060126 179.81 1868.16 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Fkbp1a ENSMUSG00000032966 176.60 1834.80 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
36. Rrm2 ENSMUSG00000020649 176.60 1834.80 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Set ENSMUSG00000054766 172.02 1787.22 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Hnrnpc ENSMUSG00000060373 169.72 1763.32 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
39. Rpl4 ENSMUSG00000032399 169.72 1763.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. mt-Rnr1 ENSMUSG00000064337 168.35 1749.09 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
41. Hba-a1 ENSMUSG00000069919 162.84 1691.84 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
42. Rpl18a ENSMUSG00000045128 162.84 1691.84 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
43. Hba-x ENSMUSG00000055609 150.46 1563.22 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Atp5g3 ENSMUSG00000018770 150.00 1558.44 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Pbx1 ENSMUSG00000052534 149.54 1553.66 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Grb10 ENSMUSG00000020176 148.62 1544.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Hsp90aa1 ENSMUSG00000021270 144.95 1505.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Rps20 ENSMUSG00000028234 143.58 1491.74 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Banf1 ENSMUSG00000024844 141.74 1472.62 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Chchd2 ENSMUSG00000070493 141.28 1467.84 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Ywhab ENSMUSG00000018326 141.28 1467.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Eef1b2 ENSMUSG00000025967 139.91 1453.61 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Tecr ENSMUSG00000031708 138.99 1444.05 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
54. Trim28 ENSMUSG00000005566 134.40 1396.36 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
55. Rpl39-ps ENSMUSG00000036305 119.72 1243.84 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
56. Rpl23 ENSMUSG00000071415 119.26 1239.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
57. Gm5805 ENSMUSG00000061848 118.35 1229.61 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
58. Ago2 ENSMUSG00000036698 114.68 1191.48 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Cox8a ENSMUSG00000035885 114.68 1191.48 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Ybx1 ENSMUSG00000028639 113.76 1181.92 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
61. Ran ENSMUSG00000029430 112.84 1172.36 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Rplp1 ENSMUSG00000007892 111.47 1158.13 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
63. Pabpc1 ENSMUSG00000022283 109.63 1139.01 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Rps5 ENSMUSG00000012848 109.17 1134.23 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Ddx39b ENSMUSG00000019432 108.71 1129.45 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
66. U2af2 ENSMUSG00000030435 106.88 1110.44 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
67. Rpl37 ENSMUSG00000041841 103.67 1077.09 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Ngfrap1 102.75 1067.53 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
69. Paics ENSMUSG00000029247 102.75 1067.53 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Gm14303 ENSMUSG00000081344 100.46 1043.74 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.00 1038.96 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Peg3 ENSMUSG00000002265 99.54 1034.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
73. Rpl8 ENSMUSG00000003970 99.54 1034.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Gm15459 ENSMUSG00000100801 99.08 1029.40 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
75. Gm5963 ENSMUSG00000052192 99.08 1029.40 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
76. Meg3 ENSMUSG00000021268 99.08 1029.40 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Rpl32 ENSMUSG00000057841 98.16 1019.84 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. Sfrp1 ENSMUSG00000031548 97.70 1015.06 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
79. Myl6 ENSMUSG00000090841 95.87 996.05 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
80. Wbp5 95.41 991.27 WW domain binding protein 5
81. Hmgn1 ENSMUSG00000040681 94.49 981.71 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
82. Kpnb1 ENSMUSG00000001440 94.49 981.71 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
83. Rps4x ENSMUSG00000031320 94.49 981.71 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
84. Pcbp1 ENSMUSG00000051695 92.66 962.70 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Rps3a1 ENSMUSG00000028081 92.66 962.70 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
86. Hbb-bh1 ENSMUSG00000052217 91.74 953.14 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
87. Col3a1 ENSMUSG00000026043 91.28 948.36 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
88. Gm14586 ENSMUSG00000083621 90.82 943.58 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Tmpo ENSMUSG00000019961 89.45 929.35 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
90. Ldha ENSMUSG00000063229 88.53 919.79 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
91. Col1a1 ENSMUSG00000001506 87.61 910.23 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
92. Son ENSMUSG00000022961 87.61 910.23 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Anp32b ENSMUSG00000028333 84.40 876.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Hnrnpa2b1 ENSMUSG00000004980 84.40 876.88 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
95. Ywhae ENSMUSG00000020849 83.48 867.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. Gm8292 ENSMUSG00000100215 83.03 862.65 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
97. Cdk4 ENSMUSG00000006728 82.57 857.87 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
98. Capns1 ENSMUSG00000001794 82.11 853.09 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
99. Gm9844 ENSMUSG00000091955 82.11 853.09 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
100. Gpc3 ENSMUSG00000055653 79.82 829.30 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA