Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s20.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7943.22 82525.73 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3012.32 31296.37 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2608.96 27105.68 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1954.78 20309.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1825.49 18965.85 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Rnr1 ENSMUSG00000064337 1660.66 17253.35 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. Ptma ENSMUSG00000026238 1601.83 16642.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. mt-Nd2 ENSMUSG00000064345 1563.05 16239.24 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1300.60 13512.53 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd4 ENSMUSG00000064363 1296.07 13465.46 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 1144.17 11887.30 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 912.10 9476.22 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 612.16 6360.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 564.97 5869.73 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Rpsa ENSMUSG00000032518 429.87 4466.12 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. H19 ENSMUSG00000000031 420.17 4365.34 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. mt-Co3 ENSMUSG00000064358 385.27 4002.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Igf2 ENSMUSG00000048583 373.63 3881.81 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Npm1 ENSMUSG00000057113 354.89 3687.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Malat1 ENSMUSG00000092341 296.71 3082.66 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
21. Gm10800 ENSMUSG00000075014 285.07 2961.72 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Mdk ENSMUSG00000027239 245.64 2552.07 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Nedd4 ENSMUSG00000032216 244.35 2538.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Hmga2 ENSMUSG00000056758 234.65 2437.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Set ENSMUSG00000054766 208.15 2162.57 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Gm17132 ENSMUSG00000061331 206.85 2149.06 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
27. Ybx1 ENSMUSG00000028639 199.10 2068.54 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
28. Peg3 ENSMUSG00000002265 191.34 1987.92 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
29. Hbb-y ENSMUSG00000052187 179.71 1867.09 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
30. Hsp90ab1 ENSMUSG00000023944 174.53 1813.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Eif4g2 ENSMUSG00000005610 171.30 1779.71 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Son ENSMUSG00000022961 171.30 1779.71 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
33. Rpl23 ENSMUSG00000071415 170.66 1773.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Gm13340 ENSMUSG00000083563 168.72 1752.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Hsp90aa1 ENSMUSG00000021270 160.96 1672.29 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Cfl1 ENSMUSG00000056201 149.97 1558.11 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Tubb5 ENSMUSG00000001525 146.74 1524.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. 2810417H13Rik 146.09 1517.80 RIKEN cDNA 2810417H13 gene
39. Tuba1b ENSMUSG00000023004 145.44 1511.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
40. Rps20 ENSMUSG00000028234 144.80 1504.39 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Pkm ENSMUSG00000032294 141.57 1470.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
42. Tmsb4x ENSMUSG00000049775 141.57 1470.84 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
43. Chchd2 ENSMUSG00000070493 138.98 1443.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Rps3a1 ENSMUSG00000028081 138.98 1443.93 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
45. Pabpc1 ENSMUSG00000022283 136.39 1417.02 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
46. Rps4x ENSMUSG00000031320 135.75 1410.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Eef1b2 ENSMUSG00000025967 134.46 1396.97 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Eif5a ENSMUSG00000078812 133.16 1383.46 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Ran ENSMUSG00000029430 132.52 1376.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Rps26 ENSMUSG00000025362 129.93 1349.90 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Hnrnpc ENSMUSG00000060373 124.76 1296.19 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Rplp1 ENSMUSG00000007892 123.47 1282.79 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 122.17 1269.28 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
54. Tpt1 ENSMUSG00000060126 120.88 1255.88 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
55. Pbx1 ENSMUSG00000052534 118.94 1235.72 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
56. Hmgn1 ENSMUSG00000040681 118.30 1229.07 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. Rpl37 ENSMUSG00000041841 116.36 1208.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
58. Ywhab ENSMUSG00000018326 116.36 1208.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Rpl4 ENSMUSG00000032399 113.77 1182.01 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
60. Rpl32 ENSMUSG00000057841 111.18 1155.10 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
61. Gm21897 ENSMUSG00000094472 108.60 1128.29 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
62. Marcks ENSMUSG00000069662 107.95 1121.54 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
63. Serbp1 ENSMUSG00000036371 104.07 1081.23 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
64. Rpl39-ps ENSMUSG00000036305 103.43 1074.58 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
65. Rpl18a ENSMUSG00000045128 98.90 1027.52 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
66. Ddx3x ENSMUSG00000000787 98.26 1020.87 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
67. Gm14303 ENSMUSG00000081344 98.26 1020.87 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Hnrnph1 ENSMUSG00000007850 97.61 1014.11 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
69. Pcbp1 ENSMUSG00000051695 96.32 1000.71 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Ubb ENSMUSG00000019505 94.38 980.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
71. Grb10 ENSMUSG00000020176 93.08 967.05 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
72. Hnrnpa2b1 ENSMUSG00000004980 93.08 967.05 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Ccnd2 ENSMUSG00000000184 91.15 947.00 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
74. Ncl ENSMUSG00000026234 90.50 940.25 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
75. Ldha ENSMUSG00000063229 88.56 920.09 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
76. Meg3 ENSMUSG00000021268 85.97 893.18 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Rbm25 ENSMUSG00000010608 85.97 893.18 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
78. Atp5g3 ENSMUSG00000018770 84.03 873.03 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
79. Anp32b ENSMUSG00000028333 83.39 866.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
80. Banf1 ENSMUSG00000024844 82.10 852.97 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
81. Gm14586 ENSMUSG00000083621 82.10 852.97 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
82. Hoxc8 ENSMUSG00000001657 81.45 846.22 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
83. Rps5 ENSMUSG00000012848 80.80 839.47 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Top1 ENSMUSG00000070544 79.51 826.07 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
85. Rrm2 ENSMUSG00000020649 78.86 819.31 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
86. Paics ENSMUSG00000029247 77.57 805.91 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
87. Rpl26 ENSMUSG00000060938 76.28 792.51 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Calm1 ENSMUSG00000001175 75.63 785.75 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
89. Mapre1 ENSMUSG00000027479 75.63 785.75 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
90. Rpl13a ENSMUSG00000074129 75.63 785.75 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 75.63 785.75 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Srsf3 ENSMUSG00000071172 74.98 779.00 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Sfpq ENSMUSG00000028820 74.34 772.35 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
94. Top2a ENSMUSG00000020914 74.34 772.35 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
95. Sub1 ENSMUSG00000022205 73.05 758.95 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Ywhaz ENSMUSG00000022285 72.40 752.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
97. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 71.75 745.44 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
98. Ddx5 ENSMUSG00000020719 71.11 738.79 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
99. Dek ENSMUSG00000021377 70.46 732.04 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
100. Rps3 ENSMUSG00000030744 70.46 732.04 ribosomal protein S3 [Source:MGI Symbol;Acc:MGI:1350917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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