Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s2.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6125.58 63640.49 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2221.46 23079.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2218.10 23044.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 1525.50 15848.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1283.04 13329.89 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Co1 ENSMUSG00000064351 1041.70 10822.53 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. mt-Nd1 ENSMUSG00000064341 1036.08 10764.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Rnr1 ENSMUSG00000064337 995.67 10344.31 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Nd4 ENSMUSG00000064363 775.66 8058.56 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd5 ENSMUSG00000064367 708.31 7358.84 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. Eef1a1 ENSMUSG00000037742 678.00 7043.95 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd2 ENSMUSG00000064345 669.02 6950.65 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Nd3 ENSMUSG00000064360 582.59 6052.70 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 484.93 5038.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 443.39 4606.51 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Mdk ENSMUSG00000027239 363.70 3778.59 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. mt-Co3 ENSMUSG00000064358 346.86 3603.63 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Tmsb4x ENSMUSG00000049775 332.27 3452.05 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Ybx1 ENSMUSG00000028639 322.16 3347.02 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
20. Npm1 ENSMUSG00000057113 321.04 3335.38 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 266.04 2763.97 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Hsp90ab1 ENSMUSG00000023944 253.69 2635.66 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Ran ENSMUSG00000029430 253.69 2635.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
24. Nedd4 ENSMUSG00000032216 242.46 2518.99 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Rrm2 ENSMUSG00000020649 234.61 2437.43 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
26. Eif5a ENSMUSG00000078812 227.87 2367.41 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
27. Atp5g3 ENSMUSG00000018770 218.89 2274.11 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
28. Hbb-y ENSMUSG00000052187 206.54 2145.81 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
29. Cfl1 ENSMUSG00000056201 200.93 2087.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Gm26924 Gm26924 199.81 2075.89
31. Hsp90aa1 ENSMUSG00000021270 198.69 2064.25 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
32. Chchd2 ENSMUSG00000070493 197.56 2052.51 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
33. Tubb5 ENSMUSG00000001525 188.58 1959.21 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Tubb2b ENSMUSG00000045136 187.46 1947.58 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
35. Set ENSMUSG00000054766 186.34 1935.94 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Pkm ENSMUSG00000032294 184.09 1912.57 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
37. 2810417H13Rik 182.97 1900.93 RIKEN cDNA 2810417H13 gene
38. Eif4g2 ENSMUSG00000005610 180.73 1877.66 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Rps20 ENSMUSG00000028234 178.48 1854.28 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Rplp1 ENSMUSG00000007892 177.36 1842.65 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Rpl23 ENSMUSG00000071415 176.24 1831.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Gm13340 ENSMUSG00000083563 173.99 1807.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
43. Ldha ENSMUSG00000063229 169.50 1760.99 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
44. Tpt1 ENSMUSG00000060126 166.13 1725.97 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
45. Ccnd2 ENSMUSG00000000184 159.40 1656.05 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
46. Rps3a1 ENSMUSG00000028081 159.40 1656.05 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 154.91 1609.41 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
48. Pcbp1 ENSMUSG00000051695 152.66 1586.03 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Marcksl1 ENSMUSG00000047945 151.54 1574.39 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
50. Eef1b2 ENSMUSG00000025967 150.42 1562.76 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Ubb ENSMUSG00000019505 149.29 1551.02 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
52. Hmgn1 ENSMUSG00000040681 144.80 1504.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
53. Rpl32 ENSMUSG00000057841 143.68 1492.73 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
54. Rps26 ENSMUSG00000025362 143.68 1492.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Map1b ENSMUSG00000052727 142.56 1481.10 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
56. Rpl39-ps ENSMUSG00000036305 140.31 1457.72 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
57. Hnrnpa2b1 ENSMUSG00000004980 135.82 1411.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Malat1 ENSMUSG00000092341 135.82 1411.07 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
59. Hnrnpc ENSMUSG00000060373 131.33 1364.43 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Rps4x ENSMUSG00000031320 131.33 1364.43 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Rps5 ENSMUSG00000012848 127.97 1329.52 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Rpl4 ENSMUSG00000032399 126.84 1317.78 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
63. Tuba1a ENSMUSG00000072235 126.84 1317.78 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
64. Vim ENSMUSG00000026728 126.84 1317.78 vimentin [Source:MGI Symbol;Acc:MGI:98932]
65. Banf1 ENSMUSG00000024844 123.48 1282.87 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
66. Rpl37 ENSMUSG00000041841 122.35 1271.13 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
67. Hnrnph1 ENSMUSG00000007850 121.23 1259.49 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
68. Txn1 ENSMUSG00000028367 121.23 1259.49 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
69. Pabpc1 ENSMUSG00000022283 118.99 1236.22 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Ywhae ENSMUSG00000020849 111.13 1154.56 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
71. Hmga2 ENSMUSG00000056758 108.88 1131.19 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
72. Son ENSMUSG00000022961 106.64 1107.91 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
73. H3f3b ENSMUSG00000016559 105.52 1096.28 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
74. Grb10 ENSMUSG00000020176 104.39 1084.54 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
75. Paics ENSMUSG00000029247 104.39 1084.54 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Gm14586 ENSMUSG00000083621 102.15 1061.27 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 102.15 1061.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Ddx5 ENSMUSG00000020719 101.03 1049.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Rpl8 ENSMUSG00000003970 101.03 1049.63 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. U2af2 ENSMUSG00000030435 101.03 1049.63 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
81. Serbp1 ENSMUSG00000036371 99.90 1037.89 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
82. H19 ENSMUSG00000000031 98.78 1026.26 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
83. Trim28 ENSMUSG00000005566 98.78 1026.26 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
84. Eef2 ENSMUSG00000034994 95.41 991.24 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Hnrnpk ENSMUSG00000021546 95.41 991.24 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
86. Sfpq ENSMUSG00000028820 95.41 991.24 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
87. Ywhaz ENSMUSG00000022285 95.41 991.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
88. Gm17132 ENSMUSG00000061331 94.29 979.61 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
89. Hba-x ENSMUSG00000055609 93.17 967.97 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
90. Rps9 ENSMUSG00000006333 93.17 967.97 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
91. Ddx3x ENSMUSG00000000787 90.92 944.60 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
92. Hnrnpa0 ENSMUSG00000007836 90.92 944.60 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Pbx1 ENSMUSG00000052534 90.92 944.60 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
94. Hmgb2 ENSMUSG00000054717 89.80 932.96 high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157]
95. Marcks ENSMUSG00000069662 89.80 932.96 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
96. Snrpb ENSMUSG00000027404 88.68 921.32 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342]
97. Top2a ENSMUSG00000020914 88.68 921.32 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
98. Gnb2l1 Gnb2l1 87.56 909.69
99. Hbb-bh1 ENSMUSG00000052217 87.56 909.69 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
100. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 87.56 909.69 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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