Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s28.

Sample reads: 391,631. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 9392.48 23983.01 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 4225.58 10789.71 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 3248.86 8295.73 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. TUBA1B ENSG00000123416 2460.99 6283.96 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
5. PPIA ENSG00000196262 2342.96 5982.58 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
6. RPL5 ENSG00000122406 2280.99 5824.34 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
7. ACTG1 ENSG00000184009 2263.28 5779.12 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
8. ACTB ENSG00000075624 2195.41 5605.82 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
9. RPS20 ENSG00000008988 2192.46 5598.29 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
10. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 2083.28 5319.50 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
11. RPL15 ENSG00000174748 1844.27 4709.21 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
12. GNAS ENSG00000087460 1661.31 4242.03 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
13. RPL18A ENSG00000105640 1572.79 4016.00 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
14. RPL13AP20 ENSG00000234498 1560.99 3985.87 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
15. RPS12 ENSG00000112306 1546.23 3948.19 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
16. GAPDH ENSG00000111640 1531.48 3910.52 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
17. RPS5 ENSG00000083845 1463.61 3737.22 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
18. RPS6 ENSG00000137154 1392.79 3556.39 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
19. RPL9 ENSG00000163682 1386.89 3541.32 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
20. RPS23 ENSG00000186468 1316.07 3360.49 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
21. NGFRAP1 NGFRAP1 1307.22 3337.89
22. RPL23 ENSG00000125691 1301.31 3322.80 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
23. RPL31 ENSG00000071082 1289.51 3292.67 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
24. MTRNR2L8 ENSG00000255823 1283.61 3277.60 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
25. TPT1 ENSG00000133112 1274.76 3255.01 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
26. RPL37 ENSG00000145592 1239.35 3164.59 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
27. MDK ENSG00000110492 1195.08 3051.55 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
28. RPS11 ENSG00000142534 1171.48 2991.29 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
29. STMN1 ENSG00000117632 1136.07 2900.87 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
30. RPS27A ENSG00000143947 1118.36 2855.65 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
31. HSP90AB1 ENSG00000096384 1103.61 2817.99 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
32. RPL13 ENSG00000167526 1097.71 2802.92 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
33. RPL34 ENSG00000109475 1085.90 2772.77 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
34. RPS15A ENSG00000134419 1085.90 2772.77 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS8 ENSG00000142937 1056.40 2697.44 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
36. MTRNR2L1 ENSG00000256618 1038.69 2652.22 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
37. RPL14 ENSG00000188846 982.62 2509.05 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
38. NPM1 ENSG00000181163 979.67 2501.52 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
39. RPLP1 ENSG00000137818 964.92 2463.85 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
40. VIM ENSG00000026025 932.46 2380.97 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
41. RPL10 ENSG00000147403 914.76 2335.77 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
42. CFL1 ENSG00000172757 891.15 2275.49 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
43. RPL10A ENSG00000198755 873.44 2230.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
44. RPLP0 ENSG00000089157 867.54 2215.20 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
45. RPS7 ENSG00000171863 867.54 2215.20 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
46. RPS2 ENSG00000140988 864.59 2207.67 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
47. RPL35 ENSG00000136942 838.03 2139.85 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
48. RPS14 ENSG00000164587 832.13 2124.78 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
49. RPL11 ENSG00000142676 823.28 2102.19 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
50. RPS25 ENSG00000118181, ENSG00000280831 823.28 2102.19 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
51. RPL7A ENSG00000148303, ENSG00000280858 802.62 2049.43 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
52. PFN1 ENSG00000108518 790.82 2019.30 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
53. RPS16 ENSG00000105193 790.82 2019.30 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. ATP5G2 755.41 1928.88 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
55. RPL37A ENSG00000197756 749.51 1913.82 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
56. RPS28 ENSG00000233927 740.66 1891.22 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
57. RPS15 ENSG00000115268 722.95 1846.00 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
58. RPS21 ENSG00000171858 711.15 1815.87 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
59. HNRNPC ENSG00000092199 696.39 1778.18 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
60. HNRNPD ENSG00000138668 693.44 1770.65 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
61. RPL6 ENSG00000089009 693.44 1770.65 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
62. RPS3A ENSG00000145425 693.44 1770.65 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
63. RPS27 ENSG00000177954 690.49 1763.12 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
64. RBM3 ENSG00000102317 687.54 1755.58 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
65. HNRNPH1 ENSG00000169045, ENSG00000284254 684.59 1748.05 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
66. RPL29 ENSG00000162244 672.79 1717.92 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
67. HMGA2 ENSG00000149948 669.84 1710.39 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
68. RPL3 ENSG00000100316 655.08 1672.70 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
69. SOX4 ENSG00000124766 646.23 1650.10 SRY-box 4 [Source:HGNC Symbol;Acc:HGNC:11200]
70. HMGN1 ENSG00000205581 640.33 1635.04 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
71. RPL32 ENSG00000144713 634.43 1619.97 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
72. EIF4G2 ENSG00000110321 631.48 1612.44 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
73. NNAT ENSG00000053438 631.48 1612.44 neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
74. H2AFZ ENSG00000164032 625.57 1597.35 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
75. RPL26 ENSG00000161970 619.67 1582.28 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
76. RPL27A ENSG00000166441 616.72 1574.75 ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
77. RPL39 ENSG00000198918 613.77 1567.22 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
78. RPL4 ENSG00000174444 607.87 1552.15 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
79. IFITM2 ENSG00000185201 596.07 1522.02 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
80. MARCKS ENSG00000277443 563.61 1439.14 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
81. CHCHD2 ENSG00000106153 560.66 1431.60 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21645]
82. HNRNPA1 ENSG00000135486 560.66 1431.60 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
83. RPS29 ENSG00000213741 560.66 1431.60 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
84. RPS13 ENSG00000110700 548.85 1401.45 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
85. DDX17 ENSG00000100201 545.90 1393.92 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
86. SRSF2 ENSG00000161547 545.90 1393.92 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
87. SERF2 ENSG00000140264 542.95 1386.38 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
88. UBB ENSG00000170315 542.95 1386.38 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
89. RPS19 ENSG00000105372 537.05 1371.32 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
90. COL3A1 ENSG00000168542 534.10 1363.79 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
91. HSPA8 ENSG00000109971 495.74 1265.84 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
92. RPL18 ENSG00000063177 483.94 1235.71 ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:10310]
93. SRSF3 ENSG00000112081 480.98 1228.15 serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
94. ENO1 ENSG00000074800 475.08 1213.08 enolase 1 [Source:HGNC Symbol;Acc:HGNC:3350]
95. HNRNPA3 ENSG00000170144 472.13 1205.55 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. YBX1 ENSG00000065978 472.13 1205.55 Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014]
97. HMGB1 ENSG00000189403 469.18 1198.02 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
98. RPL7 ENSG00000147604 466.23 1190.48 ribosomal protein L7 [Source:HGNC Symbol;Acc:HGNC:10363]
99. HBE1 ENSG00000213931 463.28 1182.95 hemoglobin subunit epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
100. HNRNPA2B1 ENSG00000122566 460.33 1175.42 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA