Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s75.

Sample reads: 113,483. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4569.61 40270.79
2. EEF1A EEF1A 1253.59 11047.56
3. MT-ATP6 MT-ATP6 1120.81 9877.41
4. CIRBP ENSGALG00000030918 988.02 8707.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. GAPDH ENSGALG00000014442 967.32 8524.74 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. MT-ND5 MT-ND5 925.20 8153.55
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 838.82 7392.30 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPLP0 ENSGALG00000023294 827.40 7291.66 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. gga-mir-3533 ENSGALG00000027736 816.69 7197.28 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL15 ENSGALG00000011290 792.42 6983.39 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPLP1 ENSGALG00000030878 709.61 6253.61 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPL23A ENSGALG00000003966 668.91 5894.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. MDK ENSGALG00000008367 636.08 5605.61 midkine [Source:NCBI gene;Acc:423196]
14. RPS10 ENSGALG00000002813 632.51 5574.15 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
15. RPS23 ENSGALG00000015617 594.67 5240.67 ribosomal protein S23
16. RPL4 ENSGALG00000007711 571.11 5033.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. SNRPD1 ENSGALG00000041334 556.83 4907.20 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL27A ENSGALG00000005948 518.28 4567.47 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. RPS8 ENSGALG00000010124 493.30 4347.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPS6 ENSGALG00000015082 492.58 4340.98 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. RPS11 ENSGALG00000017299 485.44 4278.06 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
22. RPL19 ENSGALG00000001658 479.73 4227.74 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. PPIA ENSGALG00000028600 443.33 3906.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPL13 ENSGALG00000006179 439.76 3875.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPL38 ENSGALG00000001465 435.47 3837.68 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
26. RPL26 RPL26 433.33 3818.83
27. MT-ND4 MT-ND4 429.05 3781.11
28. RPS3A ENSGALG00000010077 424.05 3737.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
29. RPS12 ENSGALG00000013990 421.19 3711.84 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
30. RPL8 ENSGALG00000016232 408.34 3598.59 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
31. RPS21 ENSGALG00000005338 408.34 3598.59 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPS15A ENSGALG00000006771 404.78 3567.22 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. RPSA 403.35 3554.62 ribosomal protein SA
34. RPL7A ENSGALG00000003197 402.63 3548.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL27 ENSGALG00000002837 400.49 3529.41 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. RPS29 ENSGALG00000012229 397.64 3504.30 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
37. MT-CYB MT-CYB 396.92 3497.95
38. RPL37 ENSGALG00000014833 386.93 3409.91 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
39. MT-CO1 MT-CO1 385.50 3397.31
40. RPS2 ENSGALG00000005490 384.79 3391.05 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
41. RPL12 ENSGALG00000008806 382.64 3372.11 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPL32 ENSGALG00000027142 379.08 3340.73 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
43. RPS16 ENSGALG00000026490 376.22 3315.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. gga-mir-3527 gga-mir-3527 369.08 3252.61
45. RPS4 RPS4 368.37 3246.35
46. RPL35 ENSGALG00000035677 366.23 3227.49 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. RPL29 ENSGALG00000026978 362.66 3196.03 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. NME2 ENSGALG00000002932 354.80 3126.76 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPS15 ENSGALG00000015195 337.67 2975.80 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. ENSGALG00000028649 ENSGALG00000028649 334.10 2944.34
51. ALDOC ENSGALG00000026077 331.96 2925.48 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
52. HBG1 HBG1 331.24 2919.13
53. RPS27A ENSGALG00000036790 331.24 2919.13 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. RPL36 ENSGALG00000000474 323.39 2849.95 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
55. PHB2 ENSGALG00000014567 319.82 2818.49 prohibitin 2 [Source:NCBI gene;Acc:771124]
56. ANP32B ENSGALG00000037483 313.40 2761.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. HMGN5 ENSGALG00000007131 306.26 2698.99 high mobility group nucleosome binding domain 5, transcript variant X1
58. GNB2L1 ENSGALG00000000122 304.83 2686.39 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
59. TXN ENSGALG00000015704 302.69 2667.53 thioredoxin [Source:NCBI gene;Acc:396437]
60. RPS14 ENSGALG00000004588 293.41 2585.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPS28 ENSGALG00000024398 292.69 2579.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
62. RPL21 ENSGALG00000027035 282.70 2491.36 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPS7 ENSGALG00000016392 277.70 2447.30 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. EIF5A2 ENSGALG00000009309 270.56 2384.38 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
65. RPL24 ENSGALG00000015339 265.57 2340.40 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
66. RPL6 ENSGALG00000004818 265.57 2340.40 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. HBZ ENSGALG00000023740 259.86 2290.08 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
68. RPLP2 ENSGALG00000034811 259.86 2290.08 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
69. LDHB ENSGALG00000035836 252.00 2220.81 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
70. ACTC1 ENSGALG00000009844 247.01 2176.84 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
71. RPS13 ENSGALG00000006096 245.58 2164.23 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. ATP5G3 243.44 2145.37 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
73. UBB ENSGALG00000004509 243.44 2145.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. ENO1 ENSGALG00000002377 241.29 2126.43 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
75. RPL18A 237.01 2088.71 ribosomal protein L18a
76. HMGN2 HMGN2 236.30 2082.45
77. TCEB3 ENSGALG00000034625 234.87 2069.85 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
78. CRHOA CRHOA 233.44 2057.25
79. STMN1 ENSGALG00000001475 233.44 2057.25 stathmin 1 [Source:NCBI gene;Acc:396057]
80. RPL23 ENSGALG00000001634 232.73 2050.99 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. RPL36AL ENSGALG00000004952 229.87 2025.78 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. MT-ND3 MT-ND3 228.44 2013.18
83. RPS20 ENSGALG00000014432 223.45 1969.21 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
84. RPL5 ENSGALG00000005922 222.73 1962.86 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
85. SLC25A6_1 ENSGALG00000016691 222.02 1956.60 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
86. MT-ND1 MT-ND1 219.16 1931.40
87. RPL7 ENSGALG00000035252 219.16 1931.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. RPL14 ENSGALG00000043379 218.45 1925.14 ribosomal protein L14
89. RPL37A ENSGALG00000011472 213.45 1881.08 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
90. SET ENSGALG00000004701 212.74 1874.82 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
91. EIF4G2 ENSGALG00000005587 212.03 1868.57 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
92. FKBP4 ENSGALG00000014331 209.17 1843.36 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
93. PRDX1 ENSGALG00000010243 209.17 1843.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. ENSGALG00000002696 ENSGALG00000002696 207.74 1830.76
95. HSPA8 ENSGALG00000006512 201.32 1774.18 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
96. H3-IX H3-IX 195.61 1723.86
97. PNRC1 ENSGALG00000015780 195.61 1723.86 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
98. RPL10A ENSGALG00000002644 195.61 1723.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
99. ENSGALG00000028992 ENSGALG00000028992 194.18 1711.26
100. RPL31 ENSGALG00000016775 194.18 1711.26 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA