Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s14.

Sample reads: 113,750. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2954.82 25976.73
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1282.09 11271.25 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. CIRBP ENSGALG00000030918 1251.35 11001.00 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. EEF1A EEF1A 1128.39 9920.02
5. RPL23A ENSGALG00000003966 1082.28 9514.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. RPS10 ENSGALG00000002813 995.19 8749.02 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS23 ENSGALG00000015617 897.85 7893.28 ribosomal protein S23
8. RPLP1 ENSGALG00000030878 840.21 7386.54 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. gga-mir-3533 ENSGALG00000027736 822.28 7228.92 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL15 ENSGALG00000011290 780.01 6857.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPS15 ENSGALG00000015195 754.40 6632.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. RPLP0 ENSGALG00000023294 735.18 6463.19 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. RPS21 ENSGALG00000005338 728.78 6406.93 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
14. RPL13 ENSGALG00000006179 690.36 6069.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. RPL29 ENSGALG00000026978 677.55 5956.55 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
16. SNRPD1 ENSGALG00000041334 663.46 5832.68 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. RPL4 ENSGALG00000007711 646.81 5686.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPL35 ENSGALG00000035677 613.51 5393.56 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
19. MT-ND5 MT-ND5 589.17 5179.57
20. GAPDH ENSGALG00000014442 580.21 5100.80 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPL27A ENSGALG00000005948 572.52 5033.20 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. MT-ATP6 MT-ATP6 540.50 4751.70
23. RPL27 ENSGALG00000002837 532.82 4684.18 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPSA 532.82 4684.18 ribosomal protein SA
25. RPS15A ENSGALG00000006771 523.85 4605.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
26. RPS11 ENSGALG00000017299 513.60 4515.22 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
27. RPL36 ENSGALG00000000474 511.04 4492.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
28. RPL7A ENSGALG00000003197 498.23 4380.09 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS2 ENSGALG00000005490 487.99 4290.07 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. RPS8 ENSGALG00000010124 473.90 4166.20 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
31. RPL38 ENSGALG00000001465 472.62 4154.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
32. RPL19 ENSGALG00000001658 453.41 3986.07 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPS4 RPS4 449.56 3952.22
34. RPL37A ENSGALG00000011472 444.44 3907.21 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
35. RPS29 ENSGALG00000012229 440.60 3873.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. PPIA ENSGALG00000028600 429.07 3772.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
37. RPL23 ENSGALG00000001634 427.79 3760.83 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. MT-ND4 MT-ND4 411.14 3614.46
39. RPL32 ENSGALG00000027142 411.14 3614.46 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPS3A ENSGALG00000010077 406.02 3569.45 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. GNB2L1 ENSGALG00000000122 400.89 3524.35 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPL37 ENSGALG00000014833 400.89 3524.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
43. gga-mir-3527 gga-mir-3527 400.89 3524.35
44. RPS27A ENSGALG00000036790 382.96 3366.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. RPL24 ENSGALG00000015339 380.40 3344.21 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
46. TXN ENSGALG00000015704 380.40 3344.21 thioredoxin [Source:NCBI gene;Acc:396437]
47. RPS12 ENSGALG00000013990 379.12 3332.96 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPL18A 374.00 3287.95 ribosomal protein L18a
49. RPS14 ENSGALG00000004588 374.00 3287.95 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
50. RPL14 ENSGALG00000043379 372.72 3276.70 ribosomal protein L14
51. RPL12 ENSGALG00000008806 365.03 3209.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPL8 ENSGALG00000016232 362.47 3186.59 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. EIF5A2 ENSGALG00000009309 354.78 3118.98 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
54. NME2 ENSGALG00000002932 339.41 2983.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. TCEB3 ENSGALG00000034625 339.41 2983.86 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
56. RPL7 ENSGALG00000035252 338.13 2972.60 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
57. RPL36AL ENSGALG00000004952 335.57 2950.10 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
58. LDHB ENSGALG00000035836 325.33 2860.08 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. RPS16 ENSGALG00000026490 320.20 2814.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. MDK ENSGALG00000008367 318.92 2803.72 midkine [Source:NCBI gene;Acc:423196]
61. RPL6 ENSGALG00000004818 317.64 2792.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
62. RPS17 ENSGALG00000002157 317.64 2792.47 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
63. MT-ND3 MT-ND3 311.24 2736.21
64. FKBP4 ENSGALG00000014331 309.96 2724.95 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
65. RPL26 RPL26 308.67 2713.61
66. ATP5G3 307.39 2702.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. RPL5 ENSGALG00000005922 293.30 2578.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. PRDX1 ENSGALG00000010243 292.02 2567.24 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
69. ALDOC ENSGALG00000026077 284.34 2499.72 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
70. ENO1 ENSGALG00000002377 284.34 2499.72 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. RPS28 ENSGALG00000024398 280.50 2465.96 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
72. RPS6 ENSGALG00000015082 280.50 2465.96 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
73. ANP32B ENSGALG00000037483 276.65 2432.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
74. MT-CYB MT-CYB 272.81 2398.36
75. RPL21 ENSGALG00000027035 266.41 2342.09 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. H3-IX H3-IX 265.13 2330.84
77. RPS13 ENSGALG00000006096 265.13 2330.84 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. ENSGALG00000028649 ENSGALG00000028649 261.28 2296.99
79. RPS7 ENSGALG00000016392 258.72 2274.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. TMSB4X ENSGALG00000026383 252.32 2218.22 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
81. EIF4G2 ENSGALG00000005587 251.04 2206.97 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
82. HBZ ENSGALG00000023740 242.07 2128.11 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
83. HBG1 HBG1 238.23 2094.35
84. RPL31 ENSGALG00000016775 236.95 2083.10 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
85. SEC61G ENSGALG00000037863 227.98 2004.24 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
86. EEF1D 225.42 1981.74 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. RAN ENSGALG00000002569 216.46 1902.97 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
88. RPS24 ENSGALG00000004871 215.18 1891.71 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. CRHOA CRHOA 213.89 1880.37
90. HMGN5 ENSGALG00000007131 213.89 1880.37 high mobility group nucleosome binding domain 5, transcript variant X1
91. MT-CO1 MT-CO1 212.61 1869.12
92. ENSGALG00000002696 ENSGALG00000002696 210.05 1846.61
93. SET ENSGALG00000004701 208.77 1835.36 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. SSR1 ENSGALG00000012798 208.77 1835.36 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
95. HNRNPDL ENSGALG00000023199 207.49 1824.11 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. RPS25 ENSGALG00000007699 206.21 1812.86 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
97. PHB2 ENSGALG00000014567 199.81 1756.59 prohibitin 2 [Source:NCBI gene;Acc:771124]
98. SLC25A6_1 ENSGALG00000016691 198.53 1745.34 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. RPS20 ENSGALG00000014432 192.12 1688.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
100. NDUFB9 ENSGALG00000042242 185.72 1632.72 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA