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Experiment Chicken_E3_aorta, section s63.

Sample reads: 236,224. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 11745.00 49721.86 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 10945.00 46335.10
3. HBE 6549.00 27724.86 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 4915.00 20807.40
5. RPLP0 ENSGALG00000023294 3433.00 14533.43 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS15 ENSGALG00000015195 2485.00 10520.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. gga-mir-3533 ENSGALG00000027736 2381.00 10079.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPL4 ENSGALG00000007711 2289.00 9690.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS29 ENSGALG00000012229 2196.00 9296.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 2179.00 9224.69 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS10 ENSGALG00000002813 2060.00 8720.91 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. GAPDH ENSGALG00000014442 1826.00 7730.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. gga-mir-3527 gga-mir-3527 1817.00 7692.18
14. RPL13 ENSGALG00000006179 1810.00 7662.54 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. RPS2 ENSGALG00000005490 1740.00 7366.20 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. MT-ATP6 MT-ATP6 1717.00 7268.83
17. RPL15 ENSGALG00000011290 1690.00 7154.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. EEF1A EEF1A 1520.00 6434.84
19. RPS28 ENSGALG00000024398 1508.00 6384.04 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
20. RPL23A ENSGALG00000003966 1466.00 6206.24 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. RPSA 1350.00 5715.16 ribosomal protein SA
22. RPS4 RPS4 1336.00 5655.89
23. RPS8 ENSGALG00000010124 1326.00 5613.55 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
24. PPIA ENSGALG00000028600 1322.00 5596.62 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPL35 ENSGALG00000035677 1286.00 5444.22 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
26. MT-ND1 MT-ND1 1253.00 5304.51
27. MT-ND5 MT-ND5 1210.00 5122.47
28. RPL19 ENSGALG00000001658 1205.00 5101.31 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPLP1 ENSGALG00000030878 1155.00 4889.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
30. RPS15A ENSGALG00000006771 1136.00 4809.20 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL32 ENSGALG00000027142 1117.00 4728.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
32. RPS21 ENSGALG00000005338 1110.00 4699.13 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. RPS14 ENSGALG00000004588 1105.00 4677.96 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
34. RPS12 ENSGALG00000013990 1101.00 4661.03 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. RPL27A ENSGALG00000005948 1062.00 4495.92 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPL6 ENSGALG00000004818 1061.00 4491.69 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
37. RPL24 ENSGALG00000015339 1042.00 4411.25 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
38. RPL7A ENSGALG00000003197 1015.00 4296.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL29 ENSGALG00000026978 936.00 3962.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. MT-ND3 MT-ND3 935.00 3958.28
41. RPL27 ENSGALG00000002837 929.00 3932.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPS23 ENSGALG00000015617 927.00 3924.41 ribosomal protein S23
43. RPL36 ENSGALG00000000474 906.00 3835.51 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
44. SNRPD1 ENSGALG00000041334 906.00 3835.51 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. RPL12 ENSGALG00000008806 897.00 3797.40 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. MT-ND4 MT-ND4 876.00 3708.50
47. RPL21 ENSGALG00000027035 871.00 3687.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. MT-ND6 MT-ND6 858.00 3632.30
49. RPL18A 855.00 3619.60 ribosomal protein L18a
50. RPS3A ENSGALG00000010077 851.00 3602.67 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS16 ENSGALG00000026490 807.00 3416.39 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. GNB2L1 ENSGALG00000000122 803.00 3399.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPL26 RPL26 778.00 3293.62
54. ENSGALG00000018384 ENSGALG00000018384 774.00 3276.69
55. FTH FTH 766.00 3242.82
56. RPL38 ENSGALG00000001465 766.00 3242.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
57. RPL8 ENSGALG00000016232 759.00 3213.19 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
58. MDK ENSGALG00000008367 741.00 3136.99 midkine [Source:NCBI gene;Acc:423196]
59. RPS11 ENSGALG00000017299 730.00 3090.42 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. RPS27A ENSGALG00000036790 730.00 3090.42 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. ANP32B ENSGALG00000037483 723.00 3060.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPL36AL ENSGALG00000004952 723.00 3060.78 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
63. MT-CYB MT-CYB 697.00 2950.71
64. RPL7 ENSGALG00000035252 692.00 2929.55 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
65. RPL14 ENSGALG00000043379 687.00 2908.38 ribosomal protein L14
66. RPS7 ENSGALG00000016392 671.00 2840.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
67. RPL5 ENSGALG00000005922 658.00 2785.61 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. NME2 ENSGALG00000002932 649.00 2747.51 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
69. RPL37A ENSGALG00000011472 648.00 2743.28 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. RPS13 ENSGALG00000006096 611.00 2586.64 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
71. TCEB3 ENSGALG00000034625 607.00 2569.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPS3 ENSGALG00000017330 585.00 2476.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
73. RPS25 ENSGALG00000007699 570.00 2413.07 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. CIRBP ENSGALG00000030918 567.00 2400.37 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
75. TMSB4X ENSGALG00000026383 559.00 2366.50 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
76. RPS17 ENSGALG00000002157 541.00 2290.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
77. UBB ENSGALG00000004509 535.00 2264.90 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. PRDX1 ENSGALG00000010243 533.00 2256.43 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPL23 ENSGALG00000001634 512.00 2167.53 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. MMP15 ENSGALG00000038758 510.00 2159.06 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
81. ENSGALG00000028992 ENSGALG00000028992 508.00 2150.59
82. RPS24 ENSGALG00000004871 504.00 2133.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
83. RPL10A ENSGALG00000002644 498.00 2108.26 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. EEF1D 497.00 2104.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. MT-CO1 MT-CO1 485.00 2053.22
86. ALDOC ENSGALG00000026077 469.00 1985.49 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. ENO1 ENSGALG00000002377 469.00 1985.49 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. ENSGALG00000028649 ENSGALG00000028649 461.00 1951.62
89. RPS20 ENSGALG00000014432 457.00 1934.69 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
90. RPL37 ENSGALG00000014833 447.00 1892.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
91. HMGN2 HMGN2 441.00 1866.95
92. RPL31 ENSGALG00000016775 433.00 1833.08 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
93. STMN1 ENSGALG00000001475 424.00 1794.98 stathmin 1 [Source:NCBI gene;Acc:396057]
94. EIF5A2 ENSGALG00000009309 399.00 1689.15 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
95. RPS6 ENSGALG00000015082 397.00 1680.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
96. PKM ENSGALG00000001992 388.00 1642.58 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
97. LDHB ENSGALG00000035836 373.00 1579.08 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
98. ZNF593 ENSGALG00000000542 362.00 1532.51 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
99. ATP5G3 347.00 1469.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. ATP5L ENSGALG00000006899 347.00 1469.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA