Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s61.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5561.25 44764.37
2. MT-ATP6 MT-ATP6 4405.81 35463.84
3. MT-ND5 MT-ND5 4345.18 34975.81
4. MT-CYB MT-CYB 2334.56 18791.66
5. EEF1A EEF1A 1944.79 15654.27
6. gga-mir-3527 gga-mir-3527 1914.19 15407.96
7. GAPDH ENSGALG00000014442 1907.26 15352.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND4 MT-ND4 1900.91 15301.06
9. MT-CO1 MT-CO1 1606.99 12935.20
10. MT-ND1 MT-ND1 1529.62 12312.42
11. MT-ND3 MT-ND3 1464.37 11787.21
12. gga-mir-3533 ENSGALG00000027736 1280.74 10309.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. PPIA ENSGALG00000028600 1054.97 8491.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 903.68 7274.02 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 834.97 6720.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 692.92 5577.55 midkine [Source:NCBI gene;Acc:423196]
17. RPS6 ENSGALG00000015082 648.46 5219.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPS23 ENSGALG00000015617 614.39 4945.43 ribosomal protein S23
19. RPL8 ENSGALG00000016232 564.73 4545.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS7 ENSGALG00000016392 546.25 4396.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. HBE 545.10 4387.69 hemoglobin subunit epsilon
22. RPL15 ENSGALG00000011290 543.36 4373.69 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. ENO1 ENSGALG00000002377 498.32 4011.14 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. HBG1 HBG1 487.93 3927.51
25. RPL27A ENSGALG00000005948 485.04 3904.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL18A 482.73 3885.66 ribosomal protein L18a
27. STMN1 ENSGALG00000001475 478.69 3853.14 stathmin 1 [Source:NCBI gene;Acc:396057]
28. ENSGALG00000002696 ENSGALG00000002696 465.41 3746.24
29. HBZ ENSGALG00000023740 462.52 3722.98 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. RPL7A ENSGALG00000003197 444.05 3574.31 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS3 ENSGALG00000017330 425.57 3425.56 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
32. RPS4 RPS4 418.06 3365.11
33. RPL7 ENSGALG00000035252 385.15 3100.20 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. MT-ND2 MT-ND2 381.11 3067.68
35. RPS20 ENSGALG00000014432 378.22 3044.42 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
36. EIF4G2 ENSGALG00000005587 377.64 3039.75 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
37. RPL26 RPL26 377.64 3039.75
38. CIRBP ENSGALG00000030918 358.59 2886.41 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. RPS10 ENSGALG00000002813 356.85 2872.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. RPS27A ENSGALG00000036790 351.08 2825.96 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPL23 ENSGALG00000001634 345.88 2784.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. ATP6V0C ENSGALG00000009229 345.30 2779.44 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. EEF1B2 ENSGALG00000008590 338.95 2728.32 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS12 ENSGALG00000013990 324.52 2612.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. RPL31 ENSGALG00000016775 321.63 2588.91 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. ENSGALG00000018384 ENSGALG00000018384 307.19 2472.68
47. TMSB4X ENSGALG00000026383 306.04 2463.42 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
48. RPS11 ENSGALG00000017299 305.46 2458.75 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL21 ENSGALG00000027035 300.84 2421.56 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPS16 ENSGALG00000026490 299.69 2412.31 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. FKBP4 ENSGALG00000014331 284.10 2286.82 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
52. RPS8 ENSGALG00000010124 280.63 2258.88 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
53. RPL32 ENSGALG00000027142 278.32 2240.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. ENSGALG00000028992 ENSGALG00000028992 266.77 2147.32
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 264.46 2128.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. RPS24 ENSGALG00000004871 263.31 2119.47 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. RPLP1 ENSGALG00000030878 259.84 2091.54 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
58. RPL38 ENSGALG00000001465 256.96 2068.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. ENSGALG00000018386 ENSGALG00000018386 255.23 2054.43
60. RAN ENSGALG00000002569 253.49 2040.43 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
61. ATP5G3 251.76 2026.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
62. SNRPG ENSGALG00000028409 250.03 2012.58 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
63. NDUFB9 ENSGALG00000042242 242.52 1952.12 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
64. SLC25A6_1 ENSGALG00000016691 238.48 1919.61 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
65. RPL10A ENSGALG00000002644 237.32 1910.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
66. RPS29 ENSGALG00000012229 236.75 1905.68 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. RPSA 236.17 1901.01 ribosomal protein SA
68. RPL14 ENSGALG00000043379 235.01 1891.67 ribosomal protein L14
69. RPL4 ENSGALG00000007711 232.13 1868.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
70. RPL12 ENSGALG00000008806 230.97 1859.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. RPL37 ENSGALG00000014833 229.82 1849.90 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. RPS15 ENSGALG00000015195 229.82 1849.90 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. CRHOA CRHOA 225.78 1817.38
74. RPS14 ENSGALG00000004588 222.89 1794.12 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
75. ERH ENSGALG00000017384 220.00 1770.85 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
76. MIF ENSGALG00000006326 218.27 1756.93 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
77. H3-IX H3-IX 217.69 1752.26
78. RPS15A ENSGALG00000006771 214.80 1729.00 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
79. BTF3L4 ENSGALG00000010570 204.41 1645.36 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
80. RPL36 ENSGALG00000000474 202.10 1626.77 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
81. SNRPE ENSGALG00000000137 200.95 1617.51 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
82. RPL27 ENSGALG00000002837 200.37 1612.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
83. ANP32B ENSGALG00000037483 195.17 1570.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. RPL29 ENSGALG00000026978 195.17 1570.99 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
85. EIF3F ENSGALG00000005326 192.28 1547.73 eukaryotic translation initiation factor 3 subunit F
86. MT-ND6 MT-ND6 191.13 1538.47
87. ALDH1A2 ENSGALG00000004270 190.55 1533.80 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
88. TXN ENSGALG00000015704 190.55 1533.80 thioredoxin [Source:NCBI gene;Acc:396437]
89. RPL23A ENSGALG00000003966 188.82 1519.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
90. RPS3A ENSGALG00000010077 187.09 1505.95 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
91. EIF1 ENSGALG00000028517 185.93 1496.61 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
92. TPT1 ENSGALG00000028872 185.36 1492.02 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
93. PGK1 ENSGALG00000007936 183.62 1478.02 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
94. COX7C ENSGALG00000027963 183.05 1473.43 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
95. RPL3 ENSGALG00000012172 183.05 1473.43 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
96. HMGN2 HMGN2 181.89 1464.09
97. EEF1D 181.31 1459.42 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. RPL6 ENSGALG00000004818 181.31 1459.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
99. C5ORF13 C5ORF13 180.74 1454.84
100. TCEB3 ENSGALG00000034625 180.16 1450.17 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA